Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G267300 Prunus persica HOM05D006307 ORTHO05D008123 2.1e-167 592.4 334 100.0
MD01G1172000 Malus domestica HOM05D006307 ORTHO05D008123 6.7e-137 491.1 358 81.6
FAN01G0868 Fragaria x ananassa HOM05D006307 ORTHO05D008123 4.1e-134 481.9 339 80.8
FvH4_7g26311 Fragaria vesca HOM05D006307 ORTHO05D008123 6.9e-134 481.1 339 81.4
RcHm_v2.0_Chr1g0372771 Rosa chinensis HOM05D006307 ORTHO05D008123 8.4e-132 474.2 355 80.3
CANSAT56G1764 Cannabis sativa HOM05D006307 ORTHO05D008123 2.5e-120 436.0 356 75.6
Atru.chr12.221 Acer truncatum HOM05D006307 ORTHO05D008123 1.1e-115 420.6 350 74.3
TAR633G2235 Trochodendron aralioides HOM05D006307 ORTHO05D008123 4.4e-112 408.7 340 69.7
Thecc.10G187500 Theobroma cacao HOM05D006307 ORTHO05D008123 2.6e-109 399.4 342 63.2
COL.COLO4_19496 Corchorus olitorius HOM05D006307 ORTHO05D008123 7.7e-109 397.9 348 63.5
Duzib114G0239 Durio zibethinus HOM05D006307 ORTHO05D008123 8.5e-108 394.4 342 62.3
Ciclev10033529m.g Citrus clementina HOM05D006307 ORTHO05D008123 1.5e-107 393.7 339 64.9
Dinv34513 Davidia involucrata HOM05D006307 ORTHO05D008123 4.5e-101 372.1 340 62.1
Haze_17382 Corylus avellana HOM05D006307 ORTHO05D008123 5.0e-100 368.6 341 63.0
Dinv21870 Davidia involucrata HOM05D006307 ORTHO05D008123 5.0e-100 368.6 347 59.7
CiPaw.01G088900 Carya illinoinensis HOM05D006307 ORTHO05D008123 2.5e-99 366.3 341 62.8
GSVIVG01032869001 Vitis vinifera HOM05D006307 ORTHO05D008123 4.2e-99 365.5 341 61.3
PGSC0003DMG400005260 Solanum tuberosum HOM05D006307 ORTHO05D008123 9.4e-99 364.4 337 59.3
Potri.019G065500 Populus trichocarpa HOM05D006307 ORTHO05D008123 3.6e-98 362.5 339 66.1
TWI09G1245 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 3.6e-98 362.5 338 59.2
Nn2g10220 Nelumbo nucifera HOM05D006307 ORTHO05D008123 4.0e-97 359.0 338 60.7
Sabra19G0079000 Salix brachista HOM05D006307 ORTHO05D008123 4.0e-97 359.0 338 63.9
CAN.G77.11 Capsicum annuum HOM05D006307 ORTHO05D008123 5.2e-97 358.6 368 56.5
Nitab4.5_0000103g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 6.8e-97 358.2 339 59.0
Manes.07G141400 Manihot esculenta HOM05D006307 ORTHO05D008123 5.7e-96 355.1 339 61.4
Sopen03g025310 Solanum pennellii HOM05D006307 ORTHO05D008123 5.7e-96 355.1 339 58.4
Cfa001179 Carpinus fangiana HOM05D006307 ORTHO05D008123 9.8e-96 354.4 354 61.0
Gorai.012G012900 Gossypium raimondii HOM05D006307 ORTHO05D008123 1.3e-95 354.0 337 58.8
Actinidia01018 Actinidia chinensis HOM05D006307 ORTHO05D008123 1.1e-94 350.9 341 58.9
Nitab4.5_0001493g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 4.1e-94 349.0 339 58.7
Gohir.A05G404900 Gossypium hirsutum HOM05D006307 ORTHO05D008123 2.0e-93 346.7 337 57.9
Gohir.D04G010800 Gossypium hirsutum HOM05D006307 ORTHO05D008123 4.2e-91 339.0 337 56.4
QL08p065320 Quercus lobata HOM05D006307 ORTHO05D008123 1.2e-90 337.4 349 59.0
TWI73G0583 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 1.2e-90 337.4 337 56.7
Rhsim09G0187400 Rhododendron simsii HOM05D006307 ORTHO05D008123 6.1e-90 335.1 349 63.3
Cc02_g05030 Coffea canephora HOM05D006307 ORTHO05D008123 3.7e-87 325.9 340 55.3
Ca_05544_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 3.5e-85 319.3 339 53.1
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 5.0e-84 315.5 350 60.9
Eucgr.G03171 Eucalyptus grandis HOM05D006307 ORTHO05D008123 6.6e-84 315.1 337 55.2
AUR62032552 Chenopodium quinoa HOM05D006307 ORTHO05D008123 2.5e-83 313.2 354 56.5
EL10Ac2g02693 Beta vulgaris HOM05D006307 ORTHO05D008123 1.6e-82 310.5 351 53.6
LjContig00155g0000391 Lotus japonicus HOM05D006307 ORTHO05D008123 1.6e-82 310.5 345 55.1
Cpa.g.sc65.81 Carica papaya HOM05D006307 ORTHO05D008123 3.0e-81 306.2 343 54.8
HanXRQChr14g0441281 Helianthus annuus HOM05D006307 ORTHO05D008123 4.4e-80 302.4 341 51.6
Psat2g060080 Pisum sativum HOM05D006307 ORTHO05D008123 4.4e-80 302.4 337 50.1
Ah.10g029650 Amaranthus hybridus HOM05D006307 ORTHO05D008123 7.5e-80 301.6 339 56.0
Glyma.14G187500 Glycine max HOM05D006307 ORTHO05D008123 1.3e-79 300.8 346 51.2
Medtr5g068530 Medicago truncatula HOM05D006307 ORTHO05D008123 1.1e-78 297.7 314 56.7
Lalb_Chr10g0102911 Lupinus albus HOM05D006307 ORTHO05D008123 1.4e-78 297.4 348 58.9
Glyma.04G224600 Glycine max HOM05D006307 ORTHO05D008123 2.7e-77 293.1 346 52.9
Lalb_Chr08g0239321 Lupinus albus HOM05D006307 ORTHO05D008123 2.7e-77 293.1 339 49.9
PGR142G3034 Punica granatum HOM05D006307 ORTHO05D008123 1.3e-76 290.8 363 52.9
MD07G1238500 Malus domestica HOM05D006307 ORTHO05D008123 2.3e-76 290.0 155 91.6
Ah.12g064690 Amaranthus hybridus HOM05D006307 ORTHO05D008123 3.0e-76 289.7 354 51.7
ECA233G0944 Erigeron canadensis HOM05D006307 ORTHO05D008123 1.1e-75 287.7 335 50.4
Glyma.06G140100 Glycine max HOM05D006307 ORTHO05D008123 4.3e-75 285.8 346 48.8
arahy.Tifrunner.gnm1.ann1.78S8ZN Arachis hypogaea HOM05D006307 ORTHO05D008123 7.3e-75 285.0 347 49.9
arahy.Tifrunner.gnm1.ann1.8Y6D9P Arachis hypogaea HOM05D006307 ORTHO05D008123 9.5e-75 284.6 351 49.9
Glyma.02G220300 Glycine max HOM05D006307 ORTHO05D008123 8.0e-74 281.6 351 49.3
Eucgr.J00096 Eucalyptus grandis HOM05D006307 ORTHO05D008123 1.5e-72 277.3 349 49.6
Lsat_1_v5_gn_8_11140 Lactuca sativa HOM05D006307 ORTHO05D008123 1.5e-72 277.3 337 50.1
Lj1g0008062 Lotus japonicus HOM05D006307 ORTHO05D008123 9.8e-72 274.6 345 49.9
Phvul.009G041400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 1.7e-71 273.9 356 51.1
MSTRG.27248 Avicennia marina HOM05D006307 ORTHO05D008123 1.1e-70 271.2 344 50.0
THA.LOC104824373 Tarenaya hassleriana HOM05D006307 ORTHO05D008123 1.1e-70 271.2 345 50.4
PGR044G1713 Punica granatum HOM05D006307 ORTHO05D008123 3.2e-70 269.6 365 47.7
AUR62031669 Chenopodium quinoa HOM05D006307 ORTHO05D008123 1.6e-69 267.3 345 48.1
TPR.G27912 Trifolium pratense HOM05D006307 ORTHO05D008123 3.5e-69 266.2 361 47.1
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 3.5e-69 266.2 349 54.7
CDE04G1875 Ceratophyllum demersum HOM05D006307 ORTHO05D008123 6.6e-68 261.9 359 44.3
Phvul.008G187400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 1.5e-67 260.8 354 46.6
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 1.4e-65 254.2 340 45.9
arahy.Tifrunner.gnm1.ann1.SS94V0 Arachis hypogaea HOM05D006307 ORTHO05D008123 1.8e-65 253.8 339 45.4
Migut.F00561 Erythranthe guttata HOM05D006307 ORTHO05D008123 2.0e-64 250.4 342 48.2
Cc02_g04860 Coffea canephora HOM05D006307 ORTHO05D008123 2.9e-63 246.5 334 45.2
VMungo0647G2347 Vigna mungo HOM05D006307 ORTHO05D008123 3.7e-63 246.1 355 44.8
Sc11g0006110 Simmondsia chinensis HOM05D006307 ORTHO05D008123 8.3e-63 245.0 341 47.5
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 5.4e-62 242.3 319 45.1
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 3.0e-60 236.5 313 57.5
TPR.G13964 Trifolium pratense HOM05D006307 ORTHO05D008123 8.6e-60 235.0 324 44.1
Medtr3g093560 Medicago truncatula HOM05D006307 ORTHO05D008123 1.1e-59 234.6 323 43.7
Carub.0004s2313 Capsella rubella HOM05D006307 ORTHO05D008123 3.3e-59 233.0 346 47.7
AL4G38760 Arabidopsis lyrata HOM05D006307 ORTHO05D008123 3.1e-57 226.5 345 47.2
Psat5g070080 Pisum sativum HOM05D006307 ORTHO05D008123 6.8e-57 225.3 325 46.8
Thhalv10016922m.g Eutrema salsugineum HOM05D006307 ORTHO05D008123 3.8e-55 219.5 346 49.4
CARHR135930 Cardamine hirsuta HOM05D006307 ORTHO05D008123 4.9e-55 219.2 345 48.1
CSS0034849 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 2.4e-54 216.9 150 70.7
Os01g0818100 Oryza sativa ssp. japonica HOM05D006307 ORTHO05D008123 1.2e-53 214.5 338 39.1
Zm00001eb149710 Zea mays HOM05D006307 ORTHO05D008123 2.3e-52 210.3 345 40.0
Medtr5g069320 Medicago truncatula HOM05D006307 ORTHO05D008123 3.0e-52 209.9 152 63.2
Aqoxy4G03315 Aquilegia oxysepala HOM05D006307 ORTHO05D008123 5.1e-52 209.1 160 65.6
Sp4g23140 Schrenkiella parvula HOM05D006307 ORTHO05D008123 6.6e-52 208.8 356 44.1
Aa31LG3G1290 Aethionema arabicum HOM05D006307 ORTHO05D008123 1.5e-51 207.6 354 40.1
AT2G40815 Arabidopsis thaliana HOM05D006307 ORTHO05D008123 1.5e-51 207.6 396 39.9
BraA03t11519Z Brassica rapa HOM05D006307 ORTHO05D008123 1.9e-51 207.2 363 48.8
A03p22960 Brassica napus HOM05D006307 ORTHO05D008123 2.5e-51 206.8 377 40.8
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 6.9e-49 198.7 286 52.4
PSO384G0230 Papaver somniferum HOM05D006307 ORTHO05D008123 1.2e-48 198.0 512 33.0
BcaB01g03513 Brassica carinata HOM05D006307 ORTHO05D008123 2.0e-48 197.2 355 48.2
PSO339G5993 Papaver somniferum HOM05D006307 ORTHO05D008123 5.8e-48 195.7 228 50.4
SalBow3G4635 Salvia bowleyana HOM05D006307 ORTHO05D008123 2.2e-47 193.7 148 66.9
C03p27240 Brassica napus HOM05D006307 ORTHO05D008123 4.2e-46 189.5 381 39.9
BolC3t15106H Brassica oleracea HOM05D006307 ORTHO05D008123 5.4e-46 189.1 381 39.9
Solyc03g095300.4 Solanum lycopersicum HOM05D006307 ORTHO05D008123 7.1e-46 188.7 127 69.3
HPP92_019043 Vanilla planifolia HOM05D006307 ORTHO05D008123 7.3e-43 178.7 203 47.8
ATR1127G014 Amborella trichopoda HOM05D006307 ORTHO05D008123 1.5e-40 171.0 352 35.5
Actinidia31756 Actinidia chinensis HOM05D006307 ORTHO05D008123 9.9e-40 168.3 281 42.0
BcaC01g05375 Brassica carinata HOM05D006307 ORTHO05D008123 3.8e-39 166.4 218 47.2
C03p27220 Brassica napus HOM05D006307 ORTHO05D008123 4.9e-39 166.0 343 43.7
BolC3t15104H Brassica oleracea HOM05D006307 ORTHO05D008123 4.9e-39 166.0 343 43.7
BraA03t11518Z Brassica rapa HOM05D006307 ORTHO05D008123 1.1e-38 164.9 213 46.9
A03p22950 Brassica napus HOM05D006307 ORTHO05D008123 5.4e-38 162.5 213 46.0
Actinidia07776 Actinidia chinensis HOM05D006307 ORTHO05D008123 1.5e-35 154.5 164 56.1
C03p27230 Brassica napus HOM05D006307 ORTHO05D008123 1.0e-28 131.7 160 45.0
BolC3t15105H Brassica oleracea HOM05D006307 ORTHO05D008123 2.3e-28 130.6 211 37.4
BcaC01g05374 Brassica carinata HOM05D006307 ORTHO05D008123 9.6e-27 125.2 160 43.8
Oeu001370.1 Olea europaea HOM05D006307 ORTHO05D008123 1.3e-26 124.8 107 66.4
SEGI_32602 Sequoiadendron giganteum HOM05D006307 ORTHO05D008123 8.1e-26 122.1 220 34.5
BcaB01g03514 Brassica carinata HOM05D006307 ORTHO05D008123 2.4e-25 120.6 157 42.7
CSS0037764 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 4.0e-25 119.8 181 54.7
CAN.G70.11 Capsicum annuum HOM05D006307 ORTHO05D008123 4.5e-24 116.3 108 58.3
Lj4g0001384 Lotus japonicus HOM05D006307 ORTHO05D008123 6.3e-18 95.9 118 48.3
Medtr5g068540 Medicago truncatula HOM05D000512 ORTHO05D000861 1.6e-13 81.3 135 44.4
Cfa006376 Carpinus fangiana HOM05D001109 ORTHO05D001051 5.7e-11 72.8 150 29.3
Hma1.2p1_1336F.1_g276460 Hydrangea macrophylla HOM05D001109 ORTHO05D001051 1.3e-10 71.6 158 29.7
CSS0007005 Camellia sinensis var. sinensis HOM05D001109 ORTHO05D001051 3.1e-09 67.0 138 29.0
Glyma.03G249700 Glycine max HOM05D001109 ORTHO05D001051 4.1e-09 66.6 136 30.9
Potri.013G048400 Populus trichocarpa HOM05D001109 ORTHO05D001051 5.3e-09 66.2 148 28.4
Potri.019G021300 Populus trichocarpa HOM05D001109 ORTHO05D001051 9.1e-09 65.5 165 28.5
COL.COLO4_15517 Corchorus olitorius HOM05D001109 ORTHO05D001051 1.2e-08 65.1 164 26.8
Os02g0815100 Oryza sativa ssp. japonica HOM05D001109 ORTHO05D001051 1.5e-08 64.7 145 31.0
Sabra13G0044500 Salix brachista HOM05D001109 ORTHO05D001051 1.5e-08 64.7 148 28.4
SMO172G0022 Selaginella moellendorffii HOM05D001109 ORTHO05D001051 3.4e-08 63.5 143 30.1
Mapoly0015s0136 Marchantia polymorpha HOM05D001109 ORTHO05D000739 4.5e-08 63.2 136 27.9
Phvul.006G104400 Phaseolus vulgaris HOM05D001109 ORTHO05D001051 4.5e-08 63.2 159 28.3
Manes.08G140600 Manihot esculenta HOM05D001109 ORTHO05D001051 5.9e-08 62.8 161 28.0
Actinidia39363 Actinidia chinensis HOM05D001109 ORTHO05D001051 1.0e-07 62.0 163 29.4
SalBow5G1095 Salvia bowleyana HOM05D001109 ORTHO05D001051 2.2e-07 60.8 121 31.4
Cpa.g.sc65.83 Carica papaya HOM05D006307 ORTHO05D008123 2.9e-07 60.5 69 55.1
Dinv31709 Davidia involucrata HOM05D001109 ORTHO05D001051 2.9e-07 60.5 93 34.4
THA.LOC104817045 Tarenaya hassleriana HOM05D001109 ORTHO05D001051 2.9e-07 60.5 97 36.1
VMungo0540G1223 Vigna mungo HOM05D001109 ORTHO05D001051 2.9e-07 60.5 161 29.2
Actinidia06295 Actinidia chinensis HOM05D001109 ORTHO05D010412 3.8e-07 60.1 137 29.2
EL10Ac4g09751 Beta vulgaris HOM05D001109 ORTHO05D001051 3.8e-07 60.1 114 29.8
Gohir.A12G110100 Gossypium hirsutum HOM05D001109 ORTHO05D001051 3.8e-07 60.1 93 36.6
Gorai.008G122700 Gossypium raimondii HOM05D001109 ORTHO05D001051 3.8e-07 60.1 93 36.6
Atru.chr2.1058 Acer truncatum HOM05D001109 ORTHO05D001051 5.0e-07 59.7 139 27.3
Ciclev10021815m.g Citrus clementina HOM05D001109 ORTHO05D001051 5.0e-07 59.7 133 30.1
vmacro20871 Vaccinium macrocarpon HOM05D001109 ORTHO05D001051 5.0e-07 59.7 143 30.1
Cpa.g.sc717.2 Carica papaya HOM05D001109 ORTHO05D001051 6.5e-07 59.3 118 28.0
Dinv43883 Davidia involucrata HOM05D003005 ORTHO05D004170 6.5e-07 59.3 151 25.8
Eucgr.H00125 Eucalyptus grandis HOM05D001109 ORTHO05D001051 6.5e-07 59.3 148 26.4
PGR142G0466 Punica granatum HOM05D001109 ORTHO05D001051 6.5e-07 59.3 138 27.5
RcHm_v2.0_Chr2g0138051 Rosa chinensis HOM05D002301 ORTHO05D002316 6.5e-07 59.3 142 32.4
Gohir.D06G198600 Gossypium hirsutum HOM05D001109 ORTHO05D001051 8.5e-07 58.9 96 33.3
HPP92_022477 Vanilla planifolia HOM05D001109 ORTHO05D001051 8.5e-07 58.9 77 39.0
AUR62006980 Chenopodium quinoa HOM05D001109 ORTHO05D001051 1.1e-06 58.5 141 27.7
Manes.03G158400 Manihot esculenta HOM05D001109 ORTHO05D001051 1.1e-06 58.5 136 27.2
HPP92_005509 Vanilla planifolia HOM05D001109 ORTHO05D001051 1.1e-06 58.5 98 37.8
Dinv24656 Davidia involucrata HOM05D001109 ORTHO05D001051 1.4e-06 58.2 139 29.5
Migut.F02060 Erythranthe guttata HOM05D001109 ORTHO05D001051 1.9e-06 57.8 139 26.6
Sabra19G0032900 Salix brachista HOM05D001109 ORTHO05D001051 1.9e-06 57.8 146 29.5
Sc01g0003090 Simmondsia chinensis HOM05D001109 ORTHO05D001051 2.5e-06 57.4 139 28.1
TAR636G2772 Trochodendron aralioides HOM05D002301 ORTHO05D002316 2.5e-06 57.4 141 27.0
TAR636G3408 Trochodendron aralioides HOM05D002301 ORTHO05D002316 2.5e-06 57.4 141 27.0
arahy.Tifrunner.gnm1.ann1.07VZ9L Arachis hypogaea HOM05D001382 ORTHO05D001266 3.2e-06 57.0 98 35.7
arahy.Tifrunner.gnm1.ann1.MLQ69B Arachis hypogaea HOM05D001382 ORTHO05D001266 3.2e-06 57.0 98 35.7
Cpa.g.sc184.8 Carica papaya HOM05D001109 ORTHO05D001051 3.2e-06 57.0 145 26.2
DCAR_025234 Daucus carota HOM05D001109 ORTHO05D001051 3.2e-06 57.0 99 34.3
Migut.N01575 Erythranthe guttata HOM05D001109 ORTHO05D001051 3.2e-06 57.0 152 27.0
Thhalv10020890m.g Eutrema salsugineum HOM05D001109 ORTHO05D001051 3.2e-06 57.0 99 34.3
AL3G14350 Arabidopsis lyrata HOM05D001109 ORTHO05D001051 4.2e-06 56.6 99 33.3
Gohir.D12G113100 Gossypium hirsutum HOM05D001109 ORTHO05D001051 4.2e-06 56.6 93 34.4
TAR633G2301 Trochodendron aralioides HOM05D002301 ORTHO05D002316 4.2e-06 56.6 141 25.5
Carub.0003s0357 Capsella rubella HOM05D001109 ORTHO05D001051 5.5e-06 56.2 142 28.2
AUR62000627 Chenopodium quinoa HOM05D001109 ORTHO05D001051 5.5e-06 56.2 163 25.8
Peaxi162Scf00401g00012 Petunia axillaris HOM05D002301 ORTHO05D002316 5.5e-06 56.2 141 24.8
SEGI_08323 Sequoiadendron giganteum HOM05D002301 ORTHO05D002316 5.5e-06 56.2 147 29.9
Aa31LG5G3990 Aethionema arabicum HOM05D001109 ORTHO05D001051 7.2e-06 55.8 154 27.3
CiPaw.02G037300 Carya illinoinensis HOM05D001109 ORTHO05D001051 7.2e-06 55.8 142 28.9
Haze_17186 Corylus avellana HOM05D002301 ORTHO05D002316 7.2e-06 55.8 141 27.0
Hma1.2p1_0384F.1_g140860 Hydrangea macrophylla HOM05D001109 ORTHO05D001051 7.2e-06 55.8 141 26.2
Nn2g11398 Nelumbo nucifera HOM05D002301 ORTHO05D002316 7.2e-06 55.8 141 24.1
PSO339G6346 Papaver somniferum HOM05D002301 ORTHO05D002316 7.2e-06 55.8 135 28.1
AT3G04360 Arabidopsis thaliana HOM05D001109 ORTHO05D001051 9.4e-06 55.5 144 27.8
Sabra02G0145200 Salix brachista HOM05D001109 ORTHO05D001051 9.4e-06 55.5 93 34.4


User provided reference genes

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