Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 0.0e+00 1131.3 564 100.0
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 1.0e-278 963.0 590 83.2
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 1.9e-261 905.6 591 78.0
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 1.1e-259 899.8 591 78.0
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.0e-258 895.6 591 77.5
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.1e-255 885.6 591 76.8
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 3.9e-254 881.3 591 76.5
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 2.6e-234 815.5 595 70.1
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 1.1e-232 810.1 601 69.6
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 3.2e-232 808.5 594 69.0
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 5.4e-232 807.7 596 69.6
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 3.5e-231 805.1 571 70.1
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 4.0e-227 791.6 593 68.1
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 2.2e-225 785.8 597 66.8
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 2.9e-225 785.4 593 67.5
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 4.9e-225 784.6 594 68.7
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 1.9e-224 782.7 592 67.4
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 4.6e-223 778.1 594 67.8
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 1.0e-222 776.9 622 65.9
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.3e-222 775.8 596 66.4
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 6.7e-222 774.2 552 72.5
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 1.3e-220 770.0 596 66.4
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 2.8e-220 768.8 597 65.7
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 1.9e-216 756.1 598 65.4
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 3.2e-216 755.4 591 64.3
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 2.7e-215 752.3 592 63.5
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 2.7e-215 752.3 596 64.6
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 2.7e-215 752.3 597 64.5
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 4.6e-215 751.5 594 64.5
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 6.0e-215 751.1 672 59.8
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 1.0e-214 750.4 594 64.5
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 9.7e-213 743.8 597 64.0
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 9.7e-213 743.8 592 64.0
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.3e-212 743.4 590 63.9
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 1.1e-211 740.3 596 62.9
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 2.4e-211 739.2 591 64.3
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 3.1e-211 738.8 594 63.0
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 4.1e-211 738.4 628 61.1
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.2e-210 736.9 599 62.8
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 4.5e-210 734.9 591 62.6
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 4.5e-210 734.9 666 58.3
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 7.6e-210 734.2 592 63.5
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.3e-209 733.4 599 62.8
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 1.3e-209 733.4 596 62.9
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 2.2e-209 732.6 599 62.6
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 2.9e-209 732.3 591 63.6
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 3.8e-209 731.9 591 62.3
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 5.0e-209 731.5 597 63.3
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 6.5e-209 731.1 570 64.6
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 1.4e-208 729.9 595 63.2
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 4.2e-208 728.4 591 61.9
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 5.5e-208 728.0 594 63.1
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 2.1e-207 726.1 594 61.4
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 4.6e-207 724.9 593 63.1
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 2.3e-206 722.6 607 61.3
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 8.8e-206 720.7 595 62.7
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 4.3e-205 718.4 596 61.9
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 2.2e-204 716.1 595 61.2
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 2.2e-204 716.1 588 62.4
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 4.8e-204 714.9 590 61.2
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 4.8e-204 714.9 617 60.6
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 3.4e-202 708.8 604 60.9
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 4.5e-202 708.4 592 61.7
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 2.2e-201 706.1 595 61.7
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 2.9e-201 705.7 602 61.6
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 8.5e-201 704.1 600 62.2
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 3.2e-200 702.2 609 59.9
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 7.2e-200 701.0 594 60.6
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 1.2e-199 700.3 597 61.5
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 1.6e-199 699.9 570 62.3
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 2.7e-199 699.1 632 58.2
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 3.9e-198 695.3 570 61.8
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 8.8e-198 694.1 604 59.6
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 1.1e-197 693.7 601 59.9
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.5e-197 693.3 597 62.0
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 9.7e-197 690.6 556 63.1
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 1.7e-196 689.9 590 59.7
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 4.1e-195 685.3 592 60.6
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 1.5e-194 683.3 595 58.3
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 1.5e-194 683.3 596 58.7
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 2.0e-194 682.9 530 65.1
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 2.2e-193 679.5 592 58.8
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 2.2e-193 679.5 602 60.3
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 3.8e-193 678.7 596 58.2
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 8.5e-193 677.6 593 59.7
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 1.4e-192 676.8 596 58.2
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 9.4e-192 674.1 596 58.2
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.2e-191 673.7 595 60.2
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 1.6e-191 673.3 445 79.8
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 4.7e-191 671.8 596 58.1
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 4.7e-191 671.8 596 58.1
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 6.1e-191 671.4 592 58.6
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 8.0e-191 671.0 592 58.4
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 3.0e-190 669.1 594 57.9
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 2.6e-186 656.0 559 59.2
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 1.3e-185 653.7 504 68.1
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 9.7e-181 637.5 576 59.4
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 4.0e-174 615.5 597 55.8
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 1.8e-171 606.7 501 62.5
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 1.2e-170 604.0 594 53.0
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 1.6e-170 603.6 501 61.9
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 5.0e-169 598.6 598 54.3
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 3.6e-167 592.4 598 51.7
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 4.7e-167 592.0 601 51.7
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 4.0e-158 562.4 621 49.6
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 3.6e-151 539.3 591 50.4
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-147 527.3 519 55.9
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 4.6e-146 522.3 597 46.2
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 1.1e-144 517.7 420 65.2
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 5.8e-141 505.4 549 51.9
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 8.3e-140 501.5 467 58.5
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 7.3e-120 435.3 606 41.4
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 5.3e-118 429.1 280 78.9
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 7.1e-115 418.7 394 55.6
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 5.1e-113 412.5 429 57.3
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.3e-111 407.9 577 42.1
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 9.3e-107 391.7 597 39.9
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 4.3e-104 382.9 611 37.0
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.6e-101 373.6 282 63.8
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.0e-97 361.7 594 38.9
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 2.3e-97 360.5 249 71.9
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 5.5e-91 339.3 624 35.6
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 8.8e-89 332.0 443 45.8
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 2.2e-87 327.4 262 65.6
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 2.2e-76 290.8 596 32.7
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 3.9e-73 280.0 250 60.4
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 9.1e-70 268.9 403 43.4
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 1.4e-65 255.0 131 87.8
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 1.3e-63 248.4 279 48.4
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.7e-60 238.0 262 52.7
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 2.7e-53 214.2 166 66.9
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 4.4e-48 196.8 144 60.4
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.7e-47 194.9 280 42.1
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 4.1e-46 190.3 566 29.3
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 5.4e-38 163.3 128 67.2
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 4.6e-37 160.2 134 60.4
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 1.1e-35 155.6 361 34.1
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 6.8e-33 146.4 116 67.2
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 3.7e-31 140.6 94 66.0
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 6.0e-29 133.3 148 42.6
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 1.4e-25 122.1 85 63.5
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.3e-23 115.5 82 72.0
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 1.1e-17 95.9 395 25.1
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 2.6e-16 91.3 75 58.7
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 3.8e-15 87.4 55 65.5
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.1e-14 85.9 88 46.6
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 6.0e-13 80.1 42 83.3
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 6.0e-13 80.1 42 83.3
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 1.0e-12 79.3 111 41.4
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 1.0e-12 79.3 111 41.4
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 1.3e-12 79.0 108 42.6
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 2.3e-12 78.2 41 82.9
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 1.1e-11 75.9 41 80.5
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 4.8e-10 70.5 57 57.9
COL.COLO4_19455 Corchorus olitorius HOM05D004766 ORTHO05D006159 3.2e-06 57.8 35 82.9


User provided reference genes

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