Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 0.0e+00 1512.7 731 100.0
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 0.0e+00 1208.7 730 80.1
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 0.0e+00 1202.6 731 79.2
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 0.0e+00 1143.6 732 77.0
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 0.0e+00 1112.1 729 74.9
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 0.0e+00 1099.0 742 73.5
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 0.0e+00 1092.0 753 72.1
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 0.0e+00 1084.3 769 71.0
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.8e-296 1022.3 734 68.8
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 2.9e-286 988.4 739 65.5
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 2.3e-283 978.8 713 65.1
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 8.8e-283 976.9 693 66.4
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.3e-282 974.9 725 65.5
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 4.1e-280 968.0 729 63.8
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 7.0e-280 967.2 729 65.0
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.2e-277 958.4 705 64.5
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 2.1e-276 955.7 727 66.0
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 2.1e-276 955.7 688 65.4
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.0e-275 953.4 694 66.1
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 1.4e-275 953.0 772 61.7
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.4e-272 943.0 729 63.8
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 3.5e-271 938.3 744 62.2
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.5e-271 937.9 729 63.4
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 4.2e-269 931.4 656 67.5
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 1.0e-267 926.8 727 64.5
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.8e-267 926.0 723 61.7
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 2.6e-266 922.2 723 61.7
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 3.4e-266 921.8 684 65.2
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.5e-266 920.6 684 64.8
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.2e-265 919.1 684 65.1
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 2.8e-265 918.7 724 62.4
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 2.8e-265 918.7 685 65.0
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 3.7e-265 918.3 722 62.5
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 4.8e-265 917.9 731 62.0
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 2.4e-264 915.6 727 60.8
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 5.4e-264 914.4 704 62.2
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 9.1e-264 913.7 724 62.2
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 9.1e-264 913.7 733 61.9
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 9.1e-264 913.7 734 61.2
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 4.5e-263 911.4 721 60.9
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 5.9e-263 911.0 733 61.5
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 5.9e-263 911.0 709 62.5
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.0e-262 910.2 726 61.3
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.3e-262 909.8 705 61.8
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.7e-262 909.4 685 63.1
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.9e-261 906.0 669 68.9
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.6e-260 902.9 718 61.8
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 2.3e-259 899.0 730 61.0
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 3.0e-259 898.7 723 60.6
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 3.0e-259 898.7 723 60.7
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 7.5e-258 894.0 685 63.4
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 6.3e-257 891.0 744 59.9
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 5.4e-256 887.9 725 58.9
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 7.0e-256 887.5 680 62.8
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.6e-255 886.3 726 60.5
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 4.5e-255 884.8 671 62.7
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 7.7e-255 884.0 685 62.0
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.3e-254 883.2 685 62.0
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.8e-254 881.7 687 61.3
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 9.5e-253 877.1 671 62.4
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 2.1e-252 875.9 736 58.2
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.8e-251 872.8 716 60.2
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 3.0e-251 872.1 675 61.5
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 7.5e-250 867.5 675 60.6
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 4.9e-249 864.8 686 60.6
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 8.3e-249 864.0 686 61.1
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 7.8e-247 857.4 613 67.2
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 1.7e-246 856.3 743 56.8
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 2.3e-246 855.9 612 65.8
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 2.3e-246 855.9 743 56.8
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.1e-245 853.6 735 57.1
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.1e-245 853.6 685 60.7
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.2e-244 850.1 735 57.3
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 2.8e-244 849.0 729 58.4
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 1.0e-243 847.0 893 51.4
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.8e-243 846.3 591 67.9
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 6.8e-243 844.3 628 64.3
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 4.4e-242 841.6 685 59.6
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 9.8e-242 840.5 677 59.8
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.4e-240 836.6 735 56.5
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 9.2e-240 833.9 676 59.0
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 4.9e-233 811.6 732 54.2
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 8.3e-233 810.8 744 56.0
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 7.8e-231 804.3 737 53.3
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 7.3e-229 797.7 682 56.2
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.1e-228 796.2 693 56.7
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 8.1e-228 794.3 681 55.9
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 5.2e-227 791.6 682 55.7
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.5e-226 790.0 720 54.7
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 2.0e-226 789.6 741 53.2
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.7e-225 786.6 693 54.4
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 2.2e-225 786.2 583 64.3
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 2.9e-225 785.8 682 55.6
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 5.4e-224 781.6 731 54.3
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.7e-222 776.5 679 54.9
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 3.9e-222 775.4 682 57.0
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 5.1e-222 775.0 692 53.6
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.5e-221 773.5 676 55.3
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 4.3e-221 771.9 708 56.8
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.2e-220 770.4 681 54.8
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.8e-220 769.2 777 51.9
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 2.8e-220 769.2 733 53.6
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 3.6e-220 768.8 678 54.6
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 3.6e-220 768.8 680 54.6
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 3.6e-220 768.8 680 54.6
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 8.1e-220 767.7 732 52.5
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.1e-219 767.3 731 52.7
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.4e-219 766.9 680 54.4
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.1e-219 765.8 733 53.2
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 3.4e-218 762.3 702 54.0
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 4.6e-215 751.9 674 57.1
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.3e-214 750.4 683 57.2
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 3.0e-214 749.2 682 53.8
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 3.3e-213 745.7 695 54.7
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 7.3e-213 744.6 696 52.3
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 2.1e-212 743.0 751 51.1
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.4e-208 730.3 530 66.6
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 4.2e-208 728.8 708 54.1
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 7.1e-208 728.0 684 51.5
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.1e-207 726.5 677 54.4
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 1.3e-206 723.8 737 49.9
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.6e-204 716.8 674 53.9
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 2.4e-203 713.0 689 52.2
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.4e-200 703.7 625 56.2
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.7e-193 680.2 710 49.3
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.3e-190 670.6 556 59.7
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.3e-182 644.0 533 58.5
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 6.3e-180 635.2 695 47.1
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 2.6e-178 629.8 714 47.9
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 2.7e-175 619.8 728 46.8
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 3.8e-169 599.4 682 46.8
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 2.1e-151 540.4 547 50.8
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 5.6e-136 489.2 331 67.7
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 7.5e-133 478.8 430 52.1
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 4.6e-130 469.5 389 58.4
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 4.0e-118 429.9 297 66.3
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 3.2e-115 420.2 390 52.8
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 9.9e-109 398.7 405 49.9
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 4.7e-103 379.8 465 44.1
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 3.4e-101 373.6 231 75.8
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 3.0e-97 360.5 406 43.6
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 1.1e-94 352.1 568 35.7
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 9.6e-88 328.9 312 49.4
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 2.9e-84 317.4 573 33.7
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 5.5e-83 313.2 544 34.2
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 2.3e-81 307.8 330 49.1
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.8e-62 245.0 153 73.2
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 1.0e-60 239.2 208 58.2
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 8.8e-57 226.1 248 50.0
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 9.1e-54 216.1 139 71.2
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.2e-50 205.7 219 48.9
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 7.4e-48 196.4 229 45.9
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 3.1e-46 191.0 122 68.9
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.7e-44 185.3 389 32.6
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 5.5e-43 180.3 208 47.6
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.1e-42 178.3 129 62.8
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.0e-41 176.0 180 51.7
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 3.8e-36 157.5 160 48.8
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 2.5e-35 154.8 99 70.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 2.5e-35 154.8 99 70.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 2.5e-35 154.8 99 70.7
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 1.2e-32 146.0 281 37.0
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 1.2e-26 125.9 253 32.8
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.2e-26 125.9 199 37.7
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 6.1e-26 123.6 146 41.8
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 2.2e-23 115.2 257 30.0
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 8.3e-23 113.2 137 42.3
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 7.8e-21 106.7 238 30.7
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 3.6e-18 97.8 59 74.6
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.3e-17 95.1 76 64.5
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 6.6e-12 77.0 43 74.4
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 6.6e-12 77.0 43 74.4
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 8.0e-10 70.1 72 50.0


User provided reference genes

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