Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G254300 Prunus persica HOM05D005469 ORTHO05D001701 1.5e-52 209.1 98 100.0
MD07G1225500 Malus domestica HOM05D005469 ORTHO05D001701 8.8e-37 156.8 89 80.9
MD01G1156800 Malus domestica HOM05D005469 ORTHO05D001701 2.5e-36 155.2 90 78.9
GSVIVG01032773001 Vitis vinifera HOM05D005469 ORTHO05D001701 4.8e-35 151.0 91 76.9
Dinv21761 Davidia involucrata HOM05D005469 ORTHO05D001701 1.4e-34 149.4 85 77.6
TAR633G0722 Trochodendron aralioides HOM05D005469 ORTHO05D001701 1.4e-34 149.4 84 78.6
CSS0028429 Camellia sinensis var. sinensis HOM05D005469 ORTHO05D001701 3.1e-34 148.3 87 77.0
SalBow3G1256 Salvia bowleyana HOM05D005469 ORTHO05D001701 2.6e-33 145.2 85 76.5
Potri.008G072000 Populus trichocarpa HOM05D005469 ORTHO05D001701 6.5e-32 140.6 89 75.3
Sabra10G0142600 Salix brachista HOM05D005469 ORTHO05D001701 6.5e-32 140.6 85 75.3
Cc02_g06130 Coffea canephora HOM05D005469 ORTHO05D001701 8.5e-32 140.2 84 73.8
Duzib114G0491 Durio zibethinus HOM05D005469 ORTHO05D001701 8.5e-32 140.2 91 70.3
Hma1.2p1_3227F.1_g334240 Hydrangea macrophylla HOM05D005469 ORTHO05D001701 1.1e-31 139.8 88 70.5
QL08p063579 Quercus lobata HOM05D005469 ORTHO05D001701 1.4e-31 139.4 87 72.4
Ciclev10033597m.g Citrus clementina HOM05D005469 ORTHO05D001701 1.9e-31 139.0 88 71.6
SGA_v2.0_scaffold44G16665 Striga asiatica HOM05D005469 ORTHO05D001701 2.5e-31 138.7 84 73.8
TAR623G0989 Trochodendron aralioides HOM05D005469 ORTHO05D001701 2.5e-31 138.7 84 71.4
Phvul.001G245200 Phaseolus vulgaris HOM05D005469 ORTHO05D001701 4.2e-31 137.9 88 75.0
Potri.010G185400 Populus trichocarpa HOM05D005469 ORTHO05D001701 5.5e-31 137.5 85 72.9
Glyma.18G025200 Glycine max HOM05D005469 ORTHO05D001701 7.2e-31 137.1 88 75.0
Glyma.11G232100 Glycine max HOM05D005469 ORTHO05D001701 9.4e-31 136.7 88 75.0
Duzib128G1408 Durio zibethinus HOM05D005469 ORTHO05D001701 3.6e-30 134.8 84 71.4
ECA238G2582 Erigeron canadensis HOM05D005469 ORTHO05D001701 3.6e-30 134.8 84 70.2
Cfa001288 Carpinus fangiana HOM05D005469 ORTHO05D001701 4.7e-30 134.4 84 72.6
HanXRQChr14g0459401 Helianthus annuus HOM05D005469 ORTHO05D001701 4.7e-30 134.4 84 69.0
Manes.07G132700 Manihot esculenta HOM05D005469 ORTHO05D001701 4.7e-30 134.4 89 74.2
PSO349G0001 Papaver somniferum HOM05D005469 ORTHO05D001701 4.7e-30 134.4 85 69.4
VMungo1383G2982 Vigna mungo HOM05D005469 ORTHO05D001701 4.7e-30 134.4 88 72.7
PSO017G6429 Papaver somniferum HOM05D005469 ORTHO05D001701 6.1e-30 134.0 84 70.2
Lj8C63T7 Lonicera japonica HOM05D005469 ORTHO05D001701 7.9e-30 133.7 84 76.2
CiPaw.02G194900 Carya illinoinensis HOM05D005469 ORTHO05D001701 1.0e-29 133.3 84 71.4
Lj1C959T17 Lonicera japonica HOM05D005469 ORTHO05D001701 1.0e-29 133.3 84 73.8
ECA238G1751 Erigeron canadensis HOM05D005469 ORTHO05D001701 1.4e-29 132.9 84 69.0
Haze_17261 Corylus avellana HOM05D005469 ORTHO05D001701 1.8e-29 132.5 84 71.4
Migut.F00654 Erythranthe guttata HOM05D005469 ORTHO05D001701 1.8e-29 132.5 85 68.2
HanXRQChr07g0203111 Helianthus annuus HOM05D005469 ORTHO05D001701 1.8e-29 132.5 84 67.9
Lsat_1_v5_gn_2_124301 Lactuca sativa HOM05D005469 ORTHO05D001701 2.3e-29 132.1 84 69.0
Atru.chr12.80 Acer truncatum HOM05D005469 ORTHO05D001701 3.9e-29 131.3 84 70.2
Haze_17260 Corylus avellana HOM05D005469 ORTHO05D001701 3.9e-29 131.3 80 72.5
PGR142G1835 Punica granatum HOM05D005469 ORTHO05D001701 5.1e-29 131.0 84 71.4
FAN10G1213 Fragaria x ananassa HOM05D005469 ORTHO05D001701 6.7e-29 130.6 89 69.7
Eucgr.G03079 Eucalyptus grandis HOM05D005469 ORTHO05D001701 8.8e-29 130.2 92 64.1
Thecc.10G012300 Theobroma cacao HOM05D005469 ORTHO05D001701 8.8e-29 130.2 84 70.2
Medtr3g071470 Medicago truncatula HOM05D005469 ORTHO05D001701 1.5e-28 129.4 88 70.5
PSO339G0551 Papaver somniferum HOM05D005469 ORTHO05D001701 1.5e-28 129.4 87 66.7
Manes.10G009700 Manihot esculenta HOM05D005469 ORTHO05D001701 2.0e-28 129.0 89 70.8
Cfa001290 Carpinus fangiana HOM05D005469 ORTHO05D001701 3.3e-28 128.3 80 71.2
Gohir.D10G250700 Gossypium hirsutum HOM05D005469 ORTHO05D001701 4.4e-28 127.9 86 65.1
Gorai.011G291100 Gossypium raimondii HOM05D005469 ORTHO05D001701 4.4e-28 127.9 86 65.1
Lalb_Chr11g0075051 Lupinus albus HOM05D005469 ORTHO05D001701 4.4e-28 127.9 90 68.9
Ca_15147_v3 Cicer arietinum L. HOM05D005469 ORTHO05D001701 5.7e-28 127.5 88 68.2
FvH4_7g24940 Fragaria vesca HOM05D005469 ORTHO05D001701 5.7e-28 127.5 89 68.5
FAN06G3559 Fragaria x ananassa HOM05D005469 ORTHO05D001701 5.7e-28 127.5 89 68.5
Duzib106G0906 Durio zibethinus HOM05D005469 ORTHO05D001701 9.7e-28 126.7 85 68.2
TWI73G0354 Tripterygium wilfordii HOM05D005469 ORTHO05D001701 1.3e-27 126.3 87 70.1
TPR.G30151 Trifolium pratense HOM05D005469 ORTHO05D001701 2.2e-27 125.6 88 69.3
Aa31LG11G6570 Aethionema arabicum HOM05D005469 ORTHO05D001701 3.7e-27 124.8 87 65.5
Sabra08G0053200 Salix brachista HOM05D005469 ORTHO05D001701 3.7e-27 124.8 85 75.3
Lj6g0021216 Lotus japonicus HOM05D005469 ORTHO05D001701 4.8e-27 124.4 85 72.9
PSO801G0522 Papaver somniferum HOM05D005469 ORTHO05D001701 4.8e-27 124.4 82 68.3
Aqoxy1G01324 Aquilegia oxysepala HOM05D005469 ORTHO05D001701 6.3e-27 124.0 87 63.2
Lsat_1_v5_gn_2_124321 Lactuca sativa HOM05D005469 ORTHO05D001701 6.3e-27 124.0 84 67.9
Nitab4.5_0000058g0190 Nicotiana tabacum HOM05D005469 ORTHO05D001701 6.3e-27 124.0 84 67.9
Nitab4.5_0000666g0120 Nicotiana tabacum HOM05D005469 ORTHO05D001701 1.1e-26 123.2 84 66.7
Lalb_Chr08g0231561 Lupinus albus HOM05D005469 ORTHO05D001701 1.4e-26 122.9 88 67.0
AT5G05500 Arabidopsis thaliana HOM05D005469 ORTHO05D001701 1.8e-26 122.5 87 65.5
DCAR_024812 Daucus carota HOM05D005469 ORTHO05D001701 1.8e-26 122.5 87 64.4
LjContig00357g0002708 Lotus japonicus HOM05D005469 ORTHO05D001701 1.8e-26 122.5 87 66.7
Psat5g130360 Pisum sativum HOM05D005469 ORTHO05D001701 2.4e-26 122.1 88 69.3
CARHR207770 Cardamine hirsuta HOM05D005469 ORTHO05D001701 4.1e-26 121.3 87 64.4
EL10Ac2g04878 Beta vulgaris HOM05D005469 ORTHO05D001701 5.3e-26 120.9 84 63.1
BcaB05g21713 Brassica carinata HOM05D005469 ORTHO05D001701 5.3e-26 120.9 87 64.4
THA.LOC104826842 Tarenaya hassleriana HOM05D005469 ORTHO05D001701 7.0e-26 120.6 84 64.3
BraA10t45118Z Brassica rapa HOM05D005469 ORTHO05D001701 9.1e-26 120.2 87 63.2
RcHm_v2.0_Chr1g0370811 Rosa chinensis HOM05D005469 ORTHO05D001701 9.1e-26 120.2 89 64.0
CANSAT56G3078 Cannabis sativa HOM05D005469 ORTHO05D001701 1.2e-25 119.8 84 67.9
Nitab4.5_0003391g0070 Nicotiana tabacum HOM05D000087 ORTHO05D000793 1.2e-25 119.8 84 64.3
Carub.0006s0440 Capsella rubella HOM05D005469 ORTHO05D001701 1.5e-25 119.4 87 63.2
PGSC0003DMG400030033 Solanum tuberosum HOM05D005469 ORTHO05D001701 1.5e-25 119.4 84 65.5
AL6G15390 Arabidopsis lyrata HOM05D005469 ORTHO05D001701 2.0e-25 119.0 87 64.4
CAN.G19.12 Capsicum annuum HOM05D005469 ORTHO05D001701 2.0e-25 119.0 84 65.5
Sopen06g016860 Solanum pennellii HOM05D005469 ORTHO05D001701 2.0e-25 119.0 84 65.5
CAN.G1268.13 Capsicum annuum HOM05D005469 ORTHO05D001701 3.5e-25 118.2 84 61.9
A10p30770 Brassica napus HOM05D005469 ORTHO05D001701 4.5e-25 117.9 87 62.1
THA.LOC104816535 Tarenaya hassleriana HOM05D005469 ORTHO05D001701 4.5e-25 117.9 84 61.9
CANSAT56G4151 Cannabis sativa HOM05D005469 ORTHO05D001701 5.9e-25 117.5 84 66.7
Nitab4.5_0000789g0080 Nicotiana tabacum HOM05D005469 ORTHO05D001701 5.9e-25 117.5 84 63.1
BcaC06g32262 Brassica carinata HOM05D005469 ORTHO05D001701 7.7e-25 117.1 84 64.3
Thhalv10014798m.g Eutrema salsugineum HOM05D005469 ORTHO05D001701 7.7e-25 117.1 87 63.2
arahy.Tifrunner.gnm1.ann1.JSQZ9G Arachis hypogaea HOM05D005469 ORTHO05D001701 1.0e-24 116.7 82 72.0
BraA02t04851Z Brassica rapa HOM05D005469 ORTHO05D001701 1.0e-24 116.7 84 61.9
COL.COLO4_25530 Corchorus olitorius HOM05D005469 ORTHO05D001701 1.0e-24 116.7 80 62.5
Sp6g37350 Schrenkiella parvula HOM05D005469 ORTHO05D001701 1.0e-24 116.7 87 62.1
BcaC06g32261 Brassica carinata HOM05D005469 ORTHO05D001701 1.3e-24 116.3 87 60.9
Peaxi162Scf00045g02525 Petunia axillaris HOM05D000087 ORTHO05D000793 1.3e-24 116.3 84 63.1
Sc10g0002540 Simmondsia chinensis HOM05D005469 ORTHO05D001701 1.3e-24 116.3 80 66.2
Ah.10g036310 Amaranthus hybridus HOM05D005469 ORTHO05D001701 1.7e-24 115.9 84 59.5
BcaB05g21714 Brassica carinata HOM05D005469 ORTHO05D001701 2.2e-24 115.5 84 63.1
BolC2t06202H Brassica oleracea HOM05D005469 ORTHO05D001701 2.2e-24 115.5 84 63.1
C09p71260 Brassica napus HOM05D005469 ORTHO05D001701 3.8e-24 114.8 87 60.9
BolC9t59887H Brassica oleracea HOM05D005469 ORTHO05D001701 3.8e-24 114.8 87 60.9
AUR62012286 Chenopodium quinoa HOM05D005469 ORTHO05D001701 5.0e-24 114.4 82 61.0
MBI03_g43893_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 6.5e-24 114.0 87 62.1
MELO3C018370.2 Cucumis melo HOM05D005469 ORTHO05D001701 8.5e-24 113.6 84 60.7
C02p02370 Brassica napus HOM05D005469 ORTHO05D001701 1.1e-23 113.2 84 61.9
AUR62022927 Chenopodium quinoa HOM05D005469 ORTHO05D001701 1.5e-23 112.8 82 61.0
MBI15_g40303_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 1.5e-23 112.8 83 62.7
Solyc05g052500.4 Solanum lycopersicum HOM05D000087 ORTHO05D000793 1.5e-23 112.8 84 59.5
Sopen05g031040 Solanum pennellii HOM05D005469 ORTHO05D001701 1.5e-23 112.8 84 59.5
PGSC0003DMG400027122 Solanum tuberosum HOM05D005469 ORTHO05D001701 1.5e-23 112.8 84 59.5
CsaV3_5G010340 Cucumis sativus L. HOM05D005469 ORTHO05D001701 2.5e-23 112.1 84 59.5
ClCG07G004420 Citrullus lanatus HOM05D005469 ORTHO05D001701 3.2e-23 111.7 84 58.3
COL.COLO4_15412 Corchorus olitorius HOM05D005469 ORTHO05D001701 3.2e-23 111.7 84 61.9
arahy.Tifrunner.gnm1.ann1.NV82FA Arachis hypogaea HOM05D005469 ORTHO05D001701 2.3e-21 105.5 77 70.1
Sed0020461 Sechium edule HOM05D005469 ORTHO05D001701 2.3e-21 105.5 84 57.1
RcHm_v2.0_Chr1g0370801 Rosa chinensis HOM05D005469 ORTHO05D001701 2.0e-20 102.4 83 62.7
FAN03G1502 Fragaria x ananassa HOM05D005469 ORTHO05D001701 3.3e-20 101.7 83 62.7
FvH4_7g24910 Fragaria vesca HOM05D005469 ORTHO05D001701 4.4e-20 101.3 83 62.7
FAN01G2198 Fragaria x ananassa HOM05D005469 ORTHO05D001701 4.4e-20 101.3 83 62.7
FAN10G0251 Fragaria x ananassa HOM05D005469 ORTHO05D001701 4.4e-20 101.3 83 62.7
Gohir.A10G238851 Gossypium hirsutum HOM05D005469 ORTHO05D001701 5.7e-20 100.9 69 63.8
RcHm_v2.0_Chr1g0370791 Rosa chinensis HOM05D005469 ORTHO05D001701 1.8e-18 95.9 83 59.0
Medtr5g014340 Medicago truncatula HOM05D005469 ORTHO05D001701 1.2e-17 93.2 67 67.2
DCAR_011836 Daucus carota HOM05D005469 ORTHO05D001701 3.5e-17 91.7 89 49.4
MBI03_g21447_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 1.0e-16 90.1 68 61.8
MBI03_g21448_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 2.2e-16 89.0 70 60.0
Os01g0164300 Oryza sativa ssp. japonica HOM05D005469 ORTHO05D001701 2.5e-15 85.5 87 44.8
FAN01G2364 Fragaria x ananassa HOM05D005469 ORTHO05D001701 1.2e-14 83.2 60 68.3
Os01g0164075 Oryza sativa ssp. japonica HOM05D005469 ORTHO05D001701 2.7e-14 82.0 88 44.3
Zm00001eb123470 Zea mays HOM05D005469 ORTHO05D001701 4.4e-12 74.7 88 42.0
Cpa.g.sc19.144 Carica papaya HOM05D005469 ORTHO05D001701 3.7e-11 71.6 46 65.2
CSS0015149 Camellia sinensis var. sinensis HOM05D005469 ORTHO05D001701 6.3e-11 70.9 46 65.2
HPP92_018099 Vanilla planifolia HOM05D005469 ORTHO05D001701 4.1e-10 68.2 85 38.8
Gohir.A05G161100 Gossypium hirsutum HOM05D003009 ORTHO05D001701 7.0e-10 67.4 82 45.1
Gohir.D05G163801 Gossypium hirsutum HOM05D003009 ORTHO05D001701 7.0e-10 67.4 82 45.1
Gorai.009G168900 Gossypium raimondii HOM05D003009 ORTHO05D001701 7.0e-10 67.4 82 45.1
Thecc.06G185700 Theobroma cacao HOM05D003009 ORTHO05D001701 7.0e-10 67.4 81 48.1
ATR0174G015 Amborella trichopoda HOM05D005469 ORTHO05D001701 1.2e-09 66.6 84 41.7
Duzib192G0967 Durio zibethinus HOM05D003009 ORTHO05D001701 4.5e-09 64.7 81 43.2
Duzib235G1045 Durio zibethinus HOM05D003009 ORTHO05D001701 5.9e-09 64.3 81 44.4
COL.COLO4_03830 Corchorus olitorius HOM05D005469 ORTHO05D001701 3.8e-08 61.6 60 53.3
COL.COLO4_31456 Corchorus olitorius HOM05D003009 ORTHO05D001701 6.5e-08 60.8 81 39.5
Gohir.A06G128400 Gossypium hirsutum HOM05D003009 ORTHO05D001701 6.5e-08 60.8 81 40.7
Gohir.D06G132500 Gossypium hirsutum HOM05D003009 ORTHO05D001701 6.5e-08 60.8 81 40.7
Gorai.010G154300 Gossypium raimondii HOM05D003009 ORTHO05D001701 6.5e-08 60.8 81 40.7
CiPaw.09G060900 Carya illinoinensis HOM05D003009 ORTHO05D001701 1.1e-07 60.1 81 40.7
BcaB06g29443 Brassica carinata HOM05D002284 ORTHO05D002427 1.5e-07 59.7 88 37.5
Carub.0004s3027 Capsella rubella HOM05D002284 ORTHO05D002427 1.5e-07 59.7 79 41.8
ATR0737G038 Amborella trichopoda HOM05D003009 ORTHO05D001701 2.5e-07 58.9 85 31.8
Cfa000485 Carpinus fangiana HOM05D003009 ORTHO05D001701 3.2e-07 58.5 81 40.7
CSS0013482 Camellia sinensis var. sinensis HOM05D003009 ORTHO05D001701 4.2e-07 58.2 82 39.0
AL4G47100 Arabidopsis lyrata HOM05D002284 ORTHO05D002427 5.5e-07 57.8 79 40.5
A04p34980 Brassica napus HOM05D002284 ORTHO05D002427 5.5e-07 57.8 86 38.4
CARHR142940 Cardamine hirsuta HOM05D002284 ORTHO05D002427 5.5e-07 57.8 86 37.2
Sed0006317 Sechium edule HOM05D003009 ORTHO05D001701 5.5e-07 57.8 82 36.6
BcaC02g06981 Brassica carinata HOM05D002284 ORTHO05D002427 7.2e-07 57.4 79 39.2
C04p72880 Brassica napus HOM05D002284 ORTHO05D002427 7.2e-07 57.4 79 39.2
BolC4t28769H Brassica oleracea HOM05D002284 ORTHO05D002427 7.2e-07 57.4 79 39.2
BraSC79t46688Z Brassica rapa HOM05D002284 ORTHO05D002427 7.2e-07 57.4 79 39.2
AT2G47530 Arabidopsis thaliana HOM05D002284 ORTHO05D002427 1.2e-06 56.6 79 39.2
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 1.6e-06 56.2 89 39.3
Duzib160G0415 Durio zibethinus HOM05D003009 ORTHO05D001701 2.7e-06 55.5 81 43.2
Thhalv10001783m.g Eutrema salsugineum HOM05D002284 ORTHO05D002427 2.7e-06 55.5 66 42.4
Potri.004G044700 Populus trichocarpa HOM05D003009 ORTHO05D001701 2.7e-06 55.5 80 37.5
Sed0003622 Sechium edule HOM05D005469 ORTHO05D001701 2.7e-06 55.5 68 47.1
Cfa002262 Carpinus fangiana HOM05D003009 ORTHO05D001701 3.6e-06 55.1 81 39.5
THA.LOC104817481 Tarenaya hassleriana HOM05D002284 ORTHO05D002427 4.7e-06 54.7 81 40.7


User provided reference genes

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