Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 2.2e-135 485.7 259 100.0
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 1.0e-92 344.0 261 73.2
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 1.0e-92 344.0 261 73.2
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 1.0e-92 344.0 261 72.8
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 6.6e-92 341.3 260 73.1
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 9.9e-88 327.4 253 75.1
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 8.4e-87 324.3 261 70.1
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 7.1e-86 321.2 247 72.9
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 6.7e-68 261.5 260 60.0
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 3.3e-67 259.2 257 59.5
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 9.6e-67 257.7 257 58.0
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 2.6e-64 249.6 260 58.5
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 2.6e-64 249.6 257 55.6
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 1.3e-63 247.3 258 57.8
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 3.8e-63 245.7 258 59.7
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 6.5e-63 245.0 257 55.6
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 7.1e-62 241.5 243 57.2
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 2.1e-61 240.0 241 57.7
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 1.3e-60 237.3 257 57.6
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 8.7e-60 234.6 257 56.4
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 2.5e-59 233.0 257 55.6
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 4.3e-59 232.3 257 55.3
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 2.5e-54 216.5 257 53.7
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 7.2e-54 214.9 257 54.1
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 9.4e-54 214.5 259 54.1
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 1.2e-53 214.2 257 53.7
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 3.6e-53 212.6 258 56.6
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 3.6e-53 212.6 257 52.1
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 4.6e-53 212.2 257 50.2
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 3.9e-52 209.1 259 52.9
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 5.1e-52 208.8 254 52.4
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 5.1e-52 208.8 257 51.0
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 4.3e-51 205.7 257 50.2
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 1.3e-50 204.1 260 51.9
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 4.8e-50 202.2 257 49.4
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 1.1e-49 201.1 257 51.0
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 1.4e-49 200.7 258 50.0
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 1.8e-49 200.3 260 49.6
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 3.1e-49 199.5 250 50.0
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 6.9e-49 198.4 250 50.4
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 6.9e-49 198.4 261 51.7
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 4.5e-48 195.7 249 49.4
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 1.0e-47 194.5 211 55.9
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 2.2e-47 193.4 258 51.6
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 2.9e-47 193.0 259 47.1
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 9.4e-46 188.0 261 47.9
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 9.4e-46 188.0 243 50.6
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 2.1e-45 186.8 227 52.4
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 4.7e-45 185.7 250 48.4
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 7.9e-45 184.9 258 48.8
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 1.0e-44 184.5 263 47.5
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 1.4e-44 184.1 205 56.1
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 2.3e-44 183.3 208 52.9
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 3.9e-44 182.6 259 47.1
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 1.5e-43 180.6 260 46.5
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 2.0e-43 180.3 262 47.3
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 7.4e-43 178.3 139 69.8
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 9.7e-43 177.9 232 49.6
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 1.3e-42 177.6 261 44.8
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 2.2e-42 176.8 258 48.1
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 2.2e-42 176.8 262 45.4
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 6.3e-42 175.3 257 46.7
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 1.1e-41 174.5 257 46.3
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 7.0e-41 171.8 263 44.9
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 9.1e-41 171.4 235 47.7
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 2.0e-40 170.2 263 46.4
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 2.0e-40 170.2 214 48.1
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 7.7e-40 168.3 267 44.9
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 1.1e-38 164.5 199 52.8
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 1.6e-37 160.6 106 80.2
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 1.6e-37 160.6 106 80.2
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 4.7e-37 159.1 261 46.4
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 3.0e-36 156.4 178 54.5
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 6.7e-36 155.2 152 58.6
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 1.1e-35 154.5 148 58.8
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 5.7e-35 152.1 151 57.6
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 1.3e-34 151.0 117 65.8
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 1.3e-34 151.0 117 65.8
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 1.3e-34 151.0 117 65.8
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 1.3e-34 151.0 117 65.8
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 2.8e-34 149.8 167 54.5
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 2.8e-34 149.8 156 55.1
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 4.8e-34 149.1 172 52.3
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 4.8e-34 149.1 232 47.0
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 1.1e-33 147.9 116 69.0
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 1.4e-33 147.5 159 52.2
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 3.1e-33 146.4 162 56.2
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 4.1e-33 146.0 186 52.7
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 5.3e-33 145.6 249 41.0
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 7.0e-33 145.2 174 51.7
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 7.0e-33 145.2 177 53.7
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 2.0e-32 143.7 180 51.1
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 2.0e-32 143.7 180 51.1
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 3.5e-32 142.9 121 62.8
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 4.5e-32 142.5 180 51.1
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 4.5e-32 142.5 258 41.1
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 7.7e-32 141.7 172 50.6
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 1.1e-30 137.9 166 48.2
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 9.4e-30 134.8 247 39.7
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 6.1e-29 132.1 225 43.1
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 8.8e-28 128.3 173 51.4
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 4.1e-25 119.4 210 41.0
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 9.1e-25 118.2 84 69.0
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 1.2e-24 117.9 137 54.7
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 2.0e-24 117.1 162 50.0
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 1.3e-18 97.8 217 39.6
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 1.0e-15 88.2 152 40.1
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 1.7e-15 87.4 214 32.7
Lj8C64T12 Lonicera japonica HOM05D007292 ORTHO05D009084 1.8e-12 77.4 178 38.8
AagrBONN_evm.TU.Sc2ySwM_344.666 Anthoceros agrestis HOM05D007292 ORTHO05D009084 1.3e-07 61.2 137 33.6
Mapoly0147s0009 Marchantia polymorpha HOM05D007292 ORTHO05D009084 1.3e-07 61.2 85 41.2
Pp3c10_22900 Physcomitrium patens HOM05D033432 ORTHO05D009084 7.3e-06 55.5 115 38.3


User provided reference genes

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