Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G246300 Prunus persica HOM05D003476 ORTHO05D004057 1.2e-43 179.5 91 100.0
RcHm_v2.0_Chr1g0369421 Rosa chinensis HOM05D003476 ORTHO05D004057 1.2e-35 152.9 87 82.8
Thecc.10G026100 Theobroma cacao HOM05D003476 ORTHO05D004057 2.9e-34 148.3 86 86.0
MD01G1147400 Malus domestica HOM05D003476 ORTHO05D004057 3.8e-34 147.9 84 85.7
Manes.07G125600 Manihot esculenta HOM05D003476 ORTHO05D004057 4.9e-34 147.5 86 84.9
Duzib128G2055 Durio zibethinus HOM05D003476 ORTHO05D004057 6.4e-34 147.1 86 84.9
CiPaw.02G189900 Carya illinoinensis HOM05D003476 ORTHO05D004057 8.4e-34 146.7 86 84.9
Ciclev10032786m.g Citrus clementina HOM05D003476 ORTHO05D004057 1.1e-33 146.4 92 82.6
Potri.010G192700 Populus trichocarpa HOM05D003476 ORTHO05D004057 1.1e-33 146.4 86 84.9
Gohir.D10G243900 Gossypium hirsutum HOM05D003476 ORTHO05D004057 2.4e-33 145.2 86 87.2
THA.LOC104810073 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 4.2e-33 144.4 86 81.4
THA.LOC104824307 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 4.2e-33 144.4 86 80.2
COL.COLO4_25658 Corchorus olitorius HOM05D003476 ORTHO05D004057 1.2e-32 142.9 85 82.4
GSVIVG01016365001 Vitis vinifera HOM05D003476 ORTHO05D004057 2.1e-32 142.1 83 80.7
FAN03G0251 Fragaria x ananassa HOM05D003476 ORTHO05D004057 2.7e-32 141.7 77 85.7
FAN06G4561 Fragaria x ananassa HOM05D003476 ORTHO05D004057 3.5e-32 141.4 77 85.7
CANSAT56G1382 Cannabis sativa HOM05D003476 ORTHO05D004057 4.6e-32 141.0 89 80.9
Haze_17184 Corylus avellana HOM05D003476 ORTHO05D004057 6.0e-32 140.6 85 78.8
FvH4_7g24030 Fragaria vesca HOM05D003476 ORTHO05D004057 6.0e-32 140.6 76 86.8
FAN01G1497 Fragaria x ananassa HOM05D003476 ORTHO05D004057 6.0e-32 140.6 76 86.8
Gohir.A13G016600 Gossypium hirsutum HOM05D003476 ORTHO05D004057 7.9e-32 140.2 86 81.4
PGR142G4151 Punica granatum HOM05D003476 ORTHO05D004057 7.9e-32 140.2 86 79.1
VMungo0647G2503 Vigna mungo HOM05D003476 ORTHO05D004057 7.9e-32 140.2 79 84.8
Atru.chr12.241 Acer truncatum HOM05D003476 ORTHO05D004057 1.0e-31 139.8 85 84.7
Phvul.008G226300 Phaseolus vulgaris HOM05D003476 ORTHO05D004057 1.0e-31 139.8 78 85.9
Gohir.D13G017700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.3e-31 139.4 86 81.4
Oeu039001.1 Olea europaea HOM05D003476 ORTHO05D004057 1.3e-31 139.4 90 76.7
arahy.Tifrunner.gnm1.ann1.7TWC5I Arachis hypogaea HOM05D003476 ORTHO05D004057 1.8e-31 139.0 79 84.8
arahy.Tifrunner.gnm1.ann1.C86U5P Arachis hypogaea HOM05D003476 ORTHO05D004057 1.8e-31 139.0 79 84.8
Cfa001366 Carpinus fangiana HOM05D003476 ORTHO05D004057 2.3e-31 138.7 85 77.6
SalBow6G1938 Salvia bowleyana HOM05D003476 ORTHO05D004057 2.3e-31 138.7 88 80.7
Gohir.A10G229700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 3.0e-31 138.3 86 86.0
Sed0008497 Sechium edule HOM05D003476 ORTHO05D004057 3.0e-31 138.3 79 81.0
Glyma.14G061900 Glycine max HOM05D003476 ORTHO05D004057 3.9e-31 137.9 78 85.9
SGA_v2.0_scaffold76G25080 Striga asiatica HOM05D003476 ORTHO05D004057 3.9e-31 137.9 83 81.9
Actinidia13919 Actinidia chinensis HOM05D003476 ORTHO05D004057 5.1e-31 137.5 80 83.8
AT2G39960 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 5.1e-31 137.5 86 77.9
Potri.008G064700 Populus trichocarpa HOM05D003476 ORTHO05D004057 6.7e-31 137.1 78 88.5
AL4G37540 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 8.7e-31 136.7 86 77.9
Gorai.011G280300 Gossypium raimondii HOM05D003476 ORTHO05D004057 1.1e-30 136.3 81 86.4
Oeu039509.1 Olea europaea HOM05D003476 ORTHO05D004057 1.1e-30 136.3 88 78.4
BraA03t11468Z Brassica rapa HOM05D003476 ORTHO05D004057 1.5e-30 136.0 87 75.9
CARHR134890 Cardamine hirsuta HOM05D003476 ORTHO05D004057 1.5e-30 136.0 87 77.0
Glyma.02G254500 Glycine max HOM05D003476 ORTHO05D004057 1.5e-30 136.0 78 83.3
TAR633G0614 Trochodendron aralioides HOM05D003476 ORTHO05D004057 1.5e-30 136.0 83 78.3
CSS0000698 Camellia sinensis var. sinensis HOM05D003476 ORTHO05D004057 1.9e-30 135.6 85 80.0
Lj1A950T61 Lonicera japonica HOM05D003476 ORTHO05D004057 1.9e-30 135.6 93 73.1
Manes.10G017601 Manihot esculenta HOM05D003476 ORTHO05D004057 1.9e-30 135.6 78 87.2
BcaC01g05451 Brassica carinata HOM05D003476 ORTHO05D004057 2.5e-30 135.2 87 75.9
C03p26520 Brassica napus HOM05D003476 ORTHO05D004057 2.5e-30 135.2 87 75.9
Carub.0004s2209 Capsella rubella HOM05D003476 ORTHO05D004057 2.5e-30 135.2 86 74.4
Lsat_1_v5_gn_5_2880 Lactuca sativa HOM05D003476 ORTHO05D004057 2.5e-30 135.2 85 76.5
Sp4g22270 Schrenkiella parvula HOM05D003476 ORTHO05D004057 2.5e-30 135.2 86 77.9
CiPaw.01G295800 Carya illinoinensis HOM05D003476 ORTHO05D004057 3.3e-30 134.8 86 79.1
Gorai.013G019600 Gossypium raimondii HOM05D003476 ORTHO05D004057 4.3e-30 134.4 85 78.8
ClCG07G004000 Citrullus lanatus HOM05D003476 ORTHO05D004057 5.6e-30 134.0 79 79.7
ClCG07G004010 Citrullus lanatus HOM05D003476 ORTHO05D004057 5.6e-30 134.0 79 79.7
unitig_747.g21420 Utricularia gibba HOM05D003476 ORTHO05D004057 5.6e-30 134.0 80 80.0
Cc02_g06900 Coffea canephora HOM05D003476 ORTHO05D004057 7.4e-30 133.7 82 75.6
HanXRQChr12g0370541 Helianthus annuus HOM05D003476 ORTHO05D004057 7.4e-30 133.7 80 81.2
Medtr5g081900 Medicago truncatula HOM05D003476 ORTHO05D004057 7.4e-30 133.7 79 78.5
Sed0009203 Sechium edule HOM05D003476 ORTHO05D004057 7.4e-30 133.7 79 77.2
BcaB01g03582 Brassica carinata HOM05D003476 ORTHO05D004057 9.6e-30 133.3 87 74.7
Eucgr.G03033 Eucalyptus grandis HOM05D003476 ORTHO05D004057 9.6e-30 133.3 86 76.7
Sabra08G0047500 Salix brachista HOM05D003476 ORTHO05D004057 9.6e-30 133.3 85 77.6
TWI09G0086 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 9.6e-30 133.3 78 82.1
TWI23G0971 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 9.6e-30 133.3 78 82.1
A04p30180 Brassica napus HOM05D003476 ORTHO05D004057 1.3e-29 132.9 87 72.4
LjContig00357g0022102 Lotus japonicus HOM05D003476 ORTHO05D004057 1.3e-29 132.9 78 82.1
TPR.G8041 Trifolium pratense HOM05D003476 ORTHO05D004057 1.3e-29 132.9 78 79.5
A03p22400 Brassica napus HOM05D003476 ORTHO05D004057 1.6e-29 132.5 86 75.6
TWI53G1335 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.6e-29 132.5 78 79.5
BcaB06g29118 Brassica carinata HOM05D003476 ORTHO05D004057 2.1e-29 132.1 87 72.4
Nitab4.5_0003770g0040 Nicotiana tabacum HOM05D003476 ORTHO05D004057 2.1e-29 132.1 87 74.7
vmacro10062 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 2.1e-29 132.1 88 76.1
Duzib106G0197 Durio zibethinus HOM05D003476 ORTHO05D004057 3.7e-29 131.3 87 75.9
TWI73G1058 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 3.7e-29 131.3 78 82.1
Hma1.2p1_2137F.1_g314920 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 4.8e-29 131.0 94 73.4
Nn5g27487 Nelumbo nucifera HOM05D003476 ORTHO05D004057 4.8e-29 131.0 76 84.2
A05p06460 Brassica napus HOM05D003476 ORTHO05D004057 6.2e-29 130.6 87 72.4
TAR636G1152 Trochodendron aralioides HOM05D003476 ORTHO05D004057 6.2e-29 130.6 86 77.9
CARHR253320 Cardamine hirsuta HOM05D003476 ORTHO05D004057 1.1e-28 129.8 87 71.3
MBI16_g26377_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.1e-28 129.8 87 72.4
TWI73G1048 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.1e-28 129.8 78 80.8
BcaB02g09065 Brassica carinata HOM05D003476 ORTHO05D004057 1.4e-28 129.4 87 71.3
BcaC02g07386 Brassica carinata HOM05D003476 ORTHO05D004057 1.4e-28 129.4 87 71.3
BolC4t28272H Brassica oleracea HOM05D003476 ORTHO05D004057 1.4e-28 129.4 87 71.3
Carub.0006s3211 Capsella rubella HOM05D003476 ORTHO05D004057 1.4e-28 129.4 87 71.3
Ca_05932_v3 Cicer arietinum L. HOM05D003476 ORTHO05D004057 1.4e-28 129.4 78 76.9
AL6G47820 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 2.4e-28 128.6 87 70.1
Cpa.g.c40050 Carica papaya HOM05D003476 ORTHO05D004057 2.4e-28 128.6 75 82.7
Rhsim13G0104300 Rhododendron simsii HOM05D003476 ORTHO05D004057 2.4e-28 128.6 89 71.9
Thhalv10017265m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 3.1e-28 128.3 87 73.6
MD15G1038100 Malus domestica HOM05D003476 ORTHO05D004057 3.1e-28 128.3 87 67.8
TAR636G3666 Trochodendron aralioides HOM05D003476 ORTHO05D004057 6.9e-28 127.1 78 79.5
MSTRG.8311 Avicennia marina HOM05D003476 ORTHO05D004057 9.0e-28 126.7 87 73.6
Migut.F01426 Erythranthe guttata HOM05D003476 ORTHO05D004057 9.0e-28 126.7 88 72.7
Prupe.1G392100 Prunus persica HOM05D003476 ORTHO05D004057 9.0e-28 126.7 87 69.0
Sc06g0000400 Simmondsia chinensis HOM05D003476 ORTHO05D004057 9.0e-28 126.7 81 72.8
ECA238G4332 Erigeron canadensis HOM05D003476 ORTHO05D004057 1.2e-27 126.3 79 75.9
LjContig00357g0025168 Lotus japonicus HOM05D003476 ORTHO05D004057 1.5e-27 125.9 78 74.4
Sopen04g028030 Solanum pennellii HOM05D003476 ORTHO05D004057 1.5e-27 125.9 87 72.4
HanXRQChr08g0222281 Helianthus annuus HOM05D003476 ORTHO05D004057 2.0e-27 125.6 76 76.3
Solyc04g072032.1 Solanum lycopersicum HOM05D003476 ORTHO05D004057 2.0e-27 125.6 76 81.6
PGSC0003DMG400025078 Solanum tuberosum HOM05D003476 ORTHO05D004057 2.0e-27 125.6 86 73.3
MD08G1058400 Malus domestica HOM05D003476 ORTHO05D004057 2.6e-27 125.2 87 66.7
MELO3C025156.2 Cucumis melo HOM05D003476 ORTHO05D004057 3.4e-27 124.8 73 79.5
DCAR_011789 Daucus carota HOM05D003476 ORTHO05D004057 3.4e-27 124.8 73 83.6
Nitab4.5_0000099g0220 Nicotiana tabacum HOM05D003476 ORTHO05D004057 3.4e-27 124.8 85 71.8
Actinidia00934 Actinidia chinensis HOM05D003476 ORTHO05D004057 7.6e-27 123.6 76 81.6
Thhalv10028970m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 1.7e-26 122.5 78 75.6
HPP92_016193 Vanilla planifolia HOM05D003476 ORTHO05D004057 2.2e-26 122.1 76 77.6
Hma1.2p1_0710F.1_g207290 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 2.9e-26 121.7 93 72.0
Nn2g13624 Nelumbo nucifera HOM05D003476 ORTHO05D004057 2.9e-26 121.7 82 72.0
Sp6g04580 Schrenkiella parvula HOM05D003476 ORTHO05D004057 2.9e-26 121.7 85 69.4
RcHm_v2.0_Chr6g0299621 Rosa chinensis HOM05D003476 ORTHO05D004057 6.5e-26 120.6 84 69.0
Peaxi162Scf00360g00616 Petunia axillaris HOM05D003476 ORTHO05D004057 1.4e-25 119.4 75 74.7
PSO801G0598 Papaver somniferum HOM05D003476 ORTHO05D004057 1.9e-25 119.0 87 70.1
PSO339G6737 Papaver somniferum HOM05D003476 ORTHO05D004057 3.2e-25 118.2 87 70.1
EL10Ac2g04131 Beta vulgaris HOM05D003476 ORTHO05D004057 4.2e-25 117.9 85 68.2
FAN15G1698 Fragaria x ananassa HOM05D003476 ORTHO05D004057 7.1e-25 117.1 84 65.5
CAN.G1252.7 Capsicum annuum HOM05D003476 ORTHO05D004057 1.2e-24 116.3 78 70.5
vmacro06993 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 2.1e-24 115.5 70 80.0
Aqoxy4G02660 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 4.6e-24 114.4 74 71.6
ATR0618G113 Amborella trichopoda HOM05D003476 ORTHO05D004057 2.3e-23 112.1 75 70.7
Aqoxy214s003 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 3.9e-23 111.3 69 76.8
SEGI_14870 Sequoiadendron giganteum HOM05D003476 ORTHO05D004057 1.6e-21 105.9 83 59.0
Zm00001eb081650 Zea mays HOM05D003476 ORTHO05D004057 2.8e-21 105.1 78 61.5
Os04g0446300 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 4.8e-21 104.4 78 60.3
Os02g0565200 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 1.2e-19 99.8 73 63.0
BraA05t19614Z Brassica rapa HOM05D003476 ORTHO05D004057 2.6e-19 98.6 74 64.9
AT4G04200 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 4.5e-19 97.8 71 67.6
CsaV3_5G008920 Cucumis sativus L. HOM05D003476 ORTHO05D004057 1.3e-18 96.3 63 69.8
SpUn0110_0020 Schrenkiella parvula HOM05D003476 ORTHO05D004057 1.3e-18 96.3 84 58.3
Duzib114G0190 Durio zibethinus HOM05D003476 ORTHO05D004057 1.7e-18 95.9 61 77.0
MBI14_g25462_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 5.0e-18 94.4 64 73.4
MBI14_g30458_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 5.0e-18 94.4 64 73.4
Pp3c24_20710 Physcomitrium patens HOM05D003476 ORTHO05D004057 5.0e-18 94.4 81 58.0
Aa31LG5G19650 Aethionema arabicum HOM05D003476 ORTHO05D004057 6.5e-18 94.0 71 63.4
Pp3c8_24950 Physcomitrium patens HOM05D003476 ORTHO05D004057 1.9e-17 92.4 76 57.9
Ah.10g035550 Amaranthus hybridus HOM05D003476 ORTHO05D004057 3.2e-17 91.7 68 66.2
MBI16_g28612_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 9.3e-17 90.1 62 67.7
Mapoly0043s0045 Marchantia polymorpha HOM05D003476 ORTHO05D004057 1.2e-16 89.7 84 51.2
AUR62031591 Chenopodium quinoa HOM05D003476 ORTHO05D004057 1.6e-16 89.4 70 61.4
C04p07540 Brassica napus HOM05D003476 ORTHO05D004057 3.6e-16 88.2 69 63.8
BolC4t22371H Brassica oleracea HOM05D003476 ORTHO05D004057 3.6e-16 88.2 69 63.8
AUR62012465 Chenopodium quinoa HOM05D003476 ORTHO05D004057 2.3e-15 85.5 62 66.1
C04p67700 Brassica napus HOM05D003476 ORTHO05D004057 8.8e-15 83.6 61 65.6
MD07G1214300 Malus domestica HOM05D003476 ORTHO05D004057 8.8e-15 83.6 44 90.9
ECA233G2895 Erigeron canadensis HOM05D003476 ORTHO05D004057 7.4e-14 80.5 51 74.5
Ah.16g104950 Amaranthus hybridus HOM05D003476 ORTHO05D004057 1.7e-13 79.3 67 55.2
AagrBONN_evm.TU.Sc2ySwM_228.5500 Anthoceros agrestis HOM05D003476 ORTHO05D004057 2.4e-12 75.5 77 46.8
MBI14_g06613_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 2.0e-11 72.4 71 52.1
Psat2g035640 Pisum sativum HOM05D003476 ORTHO05D004057 7.7e-11 70.5 45 71.1
Hund03462 Selenicereus undatus HOM05D003476 ORTHO05D004057 2.2e-10 68.9 53 58.5
Sabra10G0148300 Salix brachista HOM05D003476 ORTHO05D004057 5.0e-10 67.8 45 71.1
Dinv34422 Davidia involucrata HOM05D002885 ORTHO05D003350 6.5e-10 67.4 44 70.5
Migut.F01424 Erythranthe guttata HOM05D003476 ORTHO05D004057 8.5e-10 67.0 41 75.6
Aqoxy2G00973 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 1.1e-09 66.6 84 48.8
CDE03G0334 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 1.2e-08 63.2 42 71.4
Sc09g0010500 Simmondsia chinensis HOM05D003476 ORTHO05D004057 4.7e-08 61.2 40 72.5
CDE04G3620 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 7.9e-08 60.5 46 65.2
Medtr8g093950 Medicago truncatula HOM05D003476 ORTHO05D004057 5.1e-07 57.8 43 69.8
Rhsim03G0140200 Rhododendron simsii HOM05D003476 ORTHO05D004057 6.7e-07 57.4 51 54.9
FvH4_2g40940 Fragaria vesca HOM05D003476 ORTHO05D004057 8.8e-07 57.0 84 40.5
PRCOL_00000631 Prasinoderma coloniale HOM05D003476 ORTHO05D004057 1.1e-06 56.6 71 43.7
Cre12.g524200 Chlamydomonas reinhardtii HOM05D003476 ORTHO05D004057 2.0e-06 55.8 80 42.5
Aa31LG9G9900 Aethionema arabicum HOM05D002056 ORTHO05D002289 3.3e-06 55.1 35 74.3
Dinv20956 Davidia involucrata HOM05D003476 ORTHO05D004057 9.7e-06 53.5 35 65.7
Dinv20987 Davidia involucrata HOM05D003476 ORTHO05D004057 9.7e-06 53.5 35 65.7


User provided reference genes

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