Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.4e-117 426.4 229 100.0
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 4.3e-103 378.3 231 86.1
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 1.1e-101 373.6 229 85.6
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.3e-96 356.7 209 87.6
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 2.3e-96 355.9 220 85.0
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.0e-96 355.5 234 79.5
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.0e-96 355.5 234 79.5
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.9e-96 355.1 230 81.7
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 5.1e-96 354.8 209 83.7
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 6.7e-96 354.4 234 79.1
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 8.7e-96 354.0 234 79.1
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 8.7e-96 354.0 234 79.1
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.9e-95 352.8 234 80.8
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.9e-95 352.8 234 80.8
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.5e-95 352.4 229 81.7
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.3e-95 351.7 234 78.6
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 2.8e-94 349.0 231 83.5
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 6.3e-94 347.8 229 78.2
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 6.3e-94 347.8 211 84.4
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 8.2e-94 347.4 211 83.9
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.8e-93 346.3 211 84.4
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 2.4e-93 345.9 210 81.9
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 3.1e-93 345.5 233 82.4
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 9.0e-93 344.0 229 80.8
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 1.2e-92 343.6 204 84.3
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 2.6e-92 342.4 229 82.1
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 3.4e-92 342.0 229 79.9
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 3.4e-92 342.0 216 81.9
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 1.7e-91 339.7 231 77.1
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.8e-91 338.6 209 82.8
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.1e-90 337.0 209 82.3
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.4e-90 336.7 211 82.9
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.9e-90 336.3 212 81.1
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.9e-90 336.3 206 81.6
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 3.2e-90 335.5 238 78.6
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 3.2e-90 335.5 212 80.7
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 3.2e-90 335.5 229 77.3
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 5.5e-90 334.7 211 80.6
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 7.2e-90 334.3 238 79.4
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.2e-89 333.6 211 80.6
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.1e-89 332.8 209 81.3
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 2.7e-89 332.4 228 78.1
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 4.6e-89 331.6 209 80.4
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 7.9e-89 330.9 230 77.4
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 7.9e-89 330.9 209 78.9
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 7.9e-89 330.9 209 78.9
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 7.9e-89 330.9 209 78.9
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 7.9e-89 330.9 209 81.3
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.0e-88 330.5 211 79.6
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 1.8e-88 329.7 214 78.5
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 3.9e-88 328.6 230 78.7
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 6.7e-88 327.8 213 77.9
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 6.7e-88 327.8 215 78.1
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 8.8e-88 327.4 215 77.7
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 2.5e-87 325.9 210 80.5
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 7.4e-87 324.3 214 78.0
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 9.7e-87 323.9 230 77.8
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 2.2e-86 322.8 212 78.3
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 2.2e-86 322.8 212 78.3
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 1.4e-85 320.1 217 76.0
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 3.1e-85 318.9 210 75.7
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.5e-84 316.6 210 78.6
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.4e-84 315.5 214 74.8
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 1.3e-83 313.5 230 73.5
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 1.7e-83 313.2 211 75.4
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 2.9e-83 312.4 230 73.5
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.9e-83 312.4 210 75.2
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.8e-83 312.0 210 75.2
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 3.8e-83 312.0 213 75.1
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 8.5e-83 310.8 232 70.7
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 1.4e-82 310.1 206 76.2
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.4e-82 310.1 234 75.6
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 2.5e-82 309.3 214 74.8
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 7.2e-82 307.8 217 77.9
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.6e-81 306.6 230 73.5
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 2.1e-81 306.2 205 73.7
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 2.1e-81 306.2 234 73.1
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 6.1e-81 304.7 206 75.2
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 7.9e-81 304.3 217 70.5
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.4e-80 303.5 209 74.6
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.8e-80 303.1 233 66.5
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.5e-79 300.1 205 76.1
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.5e-79 300.1 209 71.8
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.0e-79 299.7 208 71.6
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.3e-79 298.9 225 68.0
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 5.7e-79 298.1 207 72.0
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 3.7e-78 295.4 201 72.6
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 2.4e-77 292.7 199 70.9
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 1.5e-76 290.0 201 72.6
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 4.5e-76 288.5 224 74.6
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 1.7e-75 286.6 224 73.7
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 2.9e-75 285.8 200 71.0
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 2.9e-75 285.8 206 70.4
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 6.5e-75 284.6 206 69.9
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 3.2e-74 282.3 205 70.2
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.2e-74 282.3 203 70.4
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 5.5e-74 281.6 233 64.8
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 5.5e-74 281.6 233 65.2
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 5.5e-74 281.6 233 64.8
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 7.2e-74 281.2 206 68.9
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 9.4e-74 280.8 205 69.8
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 1.2e-73 280.4 233 64.4
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.6e-73 280.0 233 64.4
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 2.7e-73 279.3 206 69.4
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 2.7e-73 279.3 206 69.4
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 2.7e-73 279.3 233 64.4
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 2.7e-73 279.3 206 69.4
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 2.7e-73 279.3 206 68.9
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.0e-72 277.3 206 68.9
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.4e-72 276.9 202 68.8
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.0e-72 275.8 219 65.3
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 3.9e-72 275.4 234 63.2
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 5.2e-72 275.0 211 65.9
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 6.7e-72 274.6 206 68.4
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 8.8e-72 274.2 209 68.9
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 1.1e-71 273.9 205 69.8
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 1.1e-71 273.9 200 70.5
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 3.5e-68 262.3 198 64.6
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 4.5e-68 261.9 195 69.2
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 3.8e-67 258.8 199 64.8
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 5.0e-67 258.5 198 64.1
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 3.2e-66 255.8 190 68.9
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.8e-64 250.0 227 59.9
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 3.7e-62 242.3 213 66.7
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 4.1e-61 238.8 217 64.5
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 4.5e-60 235.3 144 80.6
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 6.5e-59 231.5 165 70.9
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.7e-57 226.1 201 56.7
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.8e-56 223.4 166 70.5
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 3.7e-54 215.7 166 65.1
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 6.6e-51 204.9 202 58.9
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 2.1e-49 199.9 123 79.7
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 4.1e-45 185.7 127 76.4
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 3.9e-43 179.1 192 54.2
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 3.9e-43 179.1 122 69.7
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 5.2e-40 168.7 104 78.8
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 2.6e-39 166.4 103 73.8
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 1.7e-38 163.7 103 76.7
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 3.0e-19 99.8 62 75.8
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 2.6e-15 86.7 62 69.4
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.2e-06 57.0 98 30.6
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.2e-06 57.0 98 30.6
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 6.4e-06 55.5 180 26.1


User provided reference genes

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