Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 1.5e-80 302.8 150 100.0
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 3.7e-71 271.6 145 93.1
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 3.7e-71 271.6 145 93.1
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 1.6e-69 266.2 145 92.4
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 4.9e-63 244.6 145 84.1
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 6.4e-63 244.2 145 83.4
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 2.4e-62 242.3 145 83.4
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.0e-60 236.9 145 84.1
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.1e-60 234.6 145 83.4
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.1e-60 234.6 145 83.4
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 6.6e-60 234.2 145 78.6
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 4.3e-59 231.5 145 82.1
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 2.8e-58 228.8 145 77.2
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 1.4e-57 226.5 145 76.6
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 2.4e-57 225.7 145 78.6
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 3.1e-57 225.3 145 77.9
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 3.1e-57 225.3 149 75.8
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 4.0e-57 224.9 145 76.6
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 5.2e-57 224.6 145 77.9
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.8e-57 224.2 160 74.4
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 8.9e-57 223.8 135 80.7
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 8.9e-57 223.8 135 80.7
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 8.9e-57 223.8 160 75.0
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 3.4e-56 221.9 135 79.3
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 4.4e-56 221.5 145 77.2
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 5.8e-56 221.1 141 78.0
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 9.9e-56 220.3 145 76.6
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 2.9e-55 218.8 135 77.8
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 3.8e-55 218.4 135 78.5
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 4.9e-55 218.0 145 75.2
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 6.4e-55 217.6 145 75.9
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.1e-54 216.9 135 78.5
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 1.1e-54 216.9 145 75.9
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 1.4e-54 216.5 145 73.8
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 1.4e-54 216.5 135 76.3
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 1.4e-54 216.5 135 78.5
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.9e-54 216.1 135 77.0
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.4e-54 215.7 135 76.3
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.4e-54 215.7 135 76.3
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.4e-54 215.7 145 74.5
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 2.4e-54 215.7 135 77.8
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 2.4e-54 215.7 135 77.8
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 2.4e-54 215.7 145 75.2
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 3.2e-54 215.3 145 72.4
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 7.1e-54 214.2 135 78.5
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 7.1e-54 214.2 135 78.5
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 9.2e-54 213.8 147 72.1
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 1.2e-53 213.4 145 75.9
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 1.6e-53 213.0 145 72.4
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 2.7e-53 212.2 147 71.4
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 2.7e-53 212.2 135 74.8
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 3.5e-53 211.8 145 73.1
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.5e-53 211.8 135 77.0
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 4.6e-53 211.5 145 72.4
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 6.0e-53 211.1 146 73.3
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 1.7e-52 209.5 145 73.1
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.9e-52 208.4 146 72.6
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 6.6e-52 207.6 146 73.3
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 6.6e-52 207.6 145 71.0
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 6.6e-52 207.6 135 74.1
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 8.6e-52 207.2 145 72.4
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.5e-51 206.5 161 68.3
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 1.5e-51 206.5 145 69.7
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.9e-51 206.1 149 71.1
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 1.9e-51 206.1 146 72.6
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 3.3e-51 205.3 145 69.7
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 3.3e-51 205.3 138 75.4
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 4.3e-51 204.9 136 74.3
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 5.6e-51 204.5 146 71.2
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 5.6e-51 204.5 145 71.7
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 7.3e-51 204.1 144 70.1
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.6e-50 203.0 133 73.7
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.6e-50 203.0 144 70.1
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 2.1e-50 202.6 135 71.9
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 2.8e-50 202.2 124 77.4
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 4.7e-50 201.4 145 69.0
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.7e-50 201.4 125 76.8
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 8.1e-50 200.7 142 71.8
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 1.8e-49 199.5 131 74.0
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 2.4e-49 199.1 129 71.3
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 4.0e-49 198.4 132 72.7
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 5.2e-49 198.0 144 68.8
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 6.9e-49 197.6 123 75.6
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 9.0e-49 197.2 145 68.3
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 9.0e-49 197.2 125 75.2
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 1.2e-48 196.8 143 68.5
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 1.5e-48 196.4 135 71.9
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 2.6e-48 195.7 136 67.6
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 5.8e-48 194.5 167 62.3
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 7.6e-48 194.1 145 68.3
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 1.7e-47 193.0 145 66.9
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 3.8e-47 191.8 147 68.0
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.1e-46 190.3 146 65.8
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 2.4e-46 189.1 146 65.8
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 5.4e-46 188.0 146 65.8
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.6e-45 186.4 147 63.3
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.6e-45 186.4 146 65.8
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 4.6e-45 184.9 132 70.5
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 6.0e-45 184.5 146 65.1
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 6.0e-45 184.5 146 65.1
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 6.0e-45 184.5 146 65.1
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 6.0e-45 184.5 147 66.0
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 6.0e-45 184.5 145 64.8
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 7.8e-45 184.1 147 66.0
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 1.7e-44 183.0 143 65.7
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 1.7e-44 183.0 142 64.8
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.7e-44 183.0 142 64.8
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.7e-44 183.0 146 63.7
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 1.7e-44 183.0 146 63.7
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.7e-44 183.0 140 66.4
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 3.9e-44 181.8 130 70.0
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 5.1e-44 181.4 177 54.8
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 8.7e-44 180.6 135 66.7
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 1.5e-43 179.9 145 65.5
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.9e-43 179.5 145 62.8
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.9e-43 179.5 145 62.8
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 3.3e-43 178.7 142 64.8
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 7.3e-43 177.6 147 62.6
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.1e-42 176.0 134 67.2
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 2.1e-42 176.0 150 62.7
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 3.6e-42 175.3 144 63.9
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 2.4e-41 172.6 144 59.7
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 9.0e-41 170.6 134 64.9
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.3e-39 166.8 152 58.6
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 6.4e-39 164.5 137 59.9
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 6.4e-39 164.5 142 62.0
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 3.2e-38 162.2 145 58.6
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 9.3e-38 160.6 149 62.4
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 4.6e-37 158.3 89 86.5
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 2.3e-36 156.0 135 63.7
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 4.8e-34 148.3 132 60.6
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 6.2e-34 147.9 124 53.2
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 4.0e-33 145.2 89 75.3
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 9.0e-33 144.1 91 76.9
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 1.2e-32 143.7 143 51.7
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 1.5e-32 143.3 112 61.6
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 1.1e-30 137.1 136 51.5
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 1.0e-28 130.6 93 65.6
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 5.1e-28 128.3 120 53.3
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 5.1e-28 128.3 120 53.3
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 9.0e-25 117.5 145 50.3
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.2e-24 117.1 72 79.2
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.5e-24 116.7 76 80.3
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.5e-24 116.7 90 60.0
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 1.3e-23 113.6 69 75.4
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.9e-23 112.5 77 76.6
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.4e-23 110.9 76 77.6
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 8.4e-23 110.9 98 63.3
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.1e-22 110.5 77 75.3
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 5.5e-22 108.2 128 41.4
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 5.1e-20 101.7 69 69.6
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 8.2e-18 94.4 75 64.0
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.0e-16 89.7 73 65.8
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.3e-15 87.0 63 69.8
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.5e-11 73.6 130 36.2
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 3.3e-11 72.4 96 43.8
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 4.8e-10 68.6 114 32.5
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 8.2e-10 67.8 54 68.5
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 4.5e-08 62.0 39 66.7
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 1.7e-07 60.1 45 62.2
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 2.2e-07 59.7 32 87.5
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.9e-06 56.6 55 56.4


User provided reference genes

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