Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 0.0e+00 3344.7 1697 100.0
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 0.0e+00 2394.8 1831 70.3
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1921.0 1772 60.5
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1903.6 1781 59.9
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1902.9 1789 59.8
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1900.2 1781 59.8
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 0.0e+00 1896.3 1772 59.9
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1798.9 1779 56.6
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1793.9 1694 58.0
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1791.2 1784 56.6
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 0.0e+00 1639.0 1769 53.4
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 0.0e+00 1514.2 1754 50.6
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 0.0e+00 1487.2 1763 49.3
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1453.7 1505 56.5
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 0.0e+00 1442.6 1763 49.0
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 0.0e+00 1438.3 1740 49.5
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1433.3 1756 49.4
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 0.0e+00 1403.7 1576 52.1
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1396.3 1753 48.4
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 0.0e+00 1379.8 1755 47.0
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 0.0e+00 1365.9 1764 46.7
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 0.0e+00 1364.0 1747 48.3
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1349.7 1762 46.6
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 0.0e+00 1345.5 1766 46.5
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1343.2 1768 46.1
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 0.0e+00 1336.2 1769 46.4
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1325.1 1775 46.0
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 0.0e+00 1299.6 1760 44.7
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 0.0e+00 1289.2 1751 46.0
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 0.0e+00 1258.4 1752 43.7
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 0.0e+00 1253.0 1707 46.6
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 0.0e+00 1245.3 1790 44.6
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 0.0e+00 1240.3 1361 51.4
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 0.0e+00 1218.0 1802 42.0
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 1213.4 1765 43.5
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 1213.4 1765 43.5
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 0.0e+00 1212.6 1800 42.6
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 0.0e+00 1208.0 1757 42.9
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 0.0e+00 1196.4 1792 43.5
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 0.0e+00 1178.7 1781 42.2
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 0.0e+00 1167.5 1786 42.8
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 0.0e+00 1161.7 1749 42.8
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 0.0e+00 1149.8 1770 42.0
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 0.0e+00 1132.1 1750 41.3
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 0.0e+00 1113.2 1661 42.6
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 0.0e+00 1111.3 1752 41.7
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1104.4 1105 58.3
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 0.0e+00 1081.2 1751 39.5
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 0.0e+00 1080.5 1247 48.0
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 1.3e-308 1063.9 2085 36.4
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 1.5e-301 1040.4 1749 40.4
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 2.2e-297 1026.5 1249 45.9
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 4.2e-296 1022.3 1795 38.8
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 8.8e-294 1014.6 1279 45.3
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 6.3e-292 1008.4 1856 38.0
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 8.3e-292 1008.1 1732 40.2
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 5.4e-291 1005.4 1713 39.3
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 7.0e-291 1005.0 1359 44.7
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 2.0e-290 1003.4 1744 39.3
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 2.7e-287 993.0 1775 38.5
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 7.5e-285 984.9 1768 38.3
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 2.8e-279 966.5 1746 37.7
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 8.3e-276 954.9 1732 38.4
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 1.4e-275 954.1 1709 39.0
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 4.6e-274 949.1 1260 44.6
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 5.9e-274 948.7 638 73.2
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 1.0e-270 937.9 1780 37.5
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 1.0e-265 921.4 1668 38.3
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 3.9e-265 919.5 1848 36.5
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 1.0e-257 894.8 1814 35.5
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 4.7e-255 885.9 800 58.0
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 6.2e-255 885.6 1805 35.8
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 2.3e-254 883.6 1726 37.3
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 5.2e-254 882.5 1736 37.4
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 3.7e-252 876.3 1745 36.8
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 4.6e-250 869.4 1732 36.6
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 6.0e-250 869.0 1764 35.3
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 1.4e-246 857.8 1749 36.1
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 2.6e-245 853.6 1747 36.9
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 2.6e-245 853.6 1752 36.2
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 2.2e-244 850.5 1723 35.5
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 9.3e-243 845.1 1741 36.4
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 6.0e-242 842.4 1727 36.4
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 3.9e-241 839.7 1725 36.9
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 1.1e-238 831.6 1737 36.6
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 3.5e-234 816.6 854 49.9
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 5.6e-232 809.3 1276 40.3
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 3.7e-223 780.0 1775 33.7
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.2e-213 748.4 745 51.5
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 6.3e-207 726.1 684 54.4
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 2.1e-202 711.1 1825 32.4
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 3.1e-198 697.2 1867 31.3
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 8.8e-193 679.1 671 53.9
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 8.3e-175 619.4 435 70.3
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 4.2e-171 607.1 1239 34.5
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 1.2e-170 605.5 1664 30.1
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 6.1e-170 603.2 1398 34.4
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 1.3e-127 462.6 896 32.8
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.2e-119 435.3 843 38.8
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 1.1e-107 396.4 1223 31.6
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.9e-102 379.0 665 36.5
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 2.7e-101 375.2 967 32.5
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 3.7e-90 338.2 605 38.8
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 2.9e-87 328.6 689 39.0
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 4.2e-86 324.7 893 28.2
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 3.4e-80 305.1 412 37.6
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 1.6e-77 296.2 535 32.7
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 1.2e-67 263.5 692 31.1
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 4.8e-66 258.1 853 26.0
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.5e-62 246.5 780 30.8
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 6.8e-60 237.7 940 26.9
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 3.8e-55 221.9 1156 25.2
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 1.8e-52 213.0 227 60.8
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 9.8e-51 207.2 441 37.9
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 1.7e-47 196.4 439 37.4
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 1.6e-37 163.3 424 32.3
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 9.8e-35 154.1 136 53.7
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.4e-33 150.2 131 55.0
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 4.6e-32 145.2 367 36.0
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 6.8e-20 104.8 345 33.3
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.3e-15 90.5 89 52.8
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 6.6e-15 88.2 338 26.9
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 1.4e-12 80.5 129 39.5
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 2.6e-11 76.3 682 24.5
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 4.4e-11 75.5 76 51.3
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 7.1e-09 68.2 399 25.6


User provided reference genes

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