Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 3.6e-55 218.0 111 100.0
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 6.2e-47 190.7 111 86.5
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 2.4e-46 188.7 111 85.6
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 1.5e-45 186.0 111 85.6
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 4.4e-45 184.5 111 85.6
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 7.6e-45 183.7 111 84.7
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 4.9e-44 181.0 111 83.8
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 8.4e-44 180.3 111 79.3
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 1.1e-43 179.9 111 82.9
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 1.9e-43 179.1 111 80.2
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 5.4e-43 177.6 109 79.8
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 5.4e-43 177.6 111 76.6
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 7.1e-43 177.2 109 81.7
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 3.5e-42 174.9 109 79.8
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 4.6e-42 174.5 110 77.3
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 7.8e-42 173.7 106 83.0
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 7.8e-42 173.7 111 74.8
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 1.3e-41 172.9 106 79.2
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 8.7e-41 170.2 109 78.0
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 1.1e-40 169.9 110 77.3
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 1.9e-40 169.1 110 75.5
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 5.6e-40 167.5 111 73.0
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 1.3e-39 166.4 109 74.3
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 2.1e-39 165.6 111 76.6
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 2.8e-39 165.2 111 73.9
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 2.8e-39 165.2 111 73.0
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 4.8e-39 164.5 111 75.7
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 4.8e-39 164.5 111 71.2
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 6.2e-39 164.1 110 74.5
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 6.2e-39 164.1 111 71.2
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 8.1e-39 163.7 111 73.9
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 1.1e-38 163.3 110 71.8
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 1.1e-38 163.3 111 73.9
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 1.4e-38 162.9 111 71.2
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 2.4e-38 162.2 112 70.5
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 6.9e-38 160.6 108 75.9
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 6.9e-38 160.6 109 71.6
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 9.0e-38 160.2 111 70.3
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 1.2e-37 159.8 110 69.1
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 1.2e-37 159.8 111 73.9
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 2.0e-37 159.1 110 69.1
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 2.0e-37 159.1 111 68.5
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 2.6e-37 158.7 109 70.6
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 3.4e-37 158.3 107 71.0
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 5.8e-37 157.5 109 74.3
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 7.6e-37 157.1 104 73.1
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 7.6e-37 157.1 111 68.5
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 1.3e-36 156.4 108 73.1
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 1.7e-36 156.0 111 71.2
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 1.7e-36 156.0 109 67.9
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 2.2e-36 155.6 109 67.0
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 3.8e-36 154.8 114 69.3
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 6.4e-36 154.1 109 66.1
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 1.1e-35 153.3 113 69.0
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 1.9e-35 152.5 109 66.1
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 1.9e-35 152.5 109 67.9
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 3.2e-35 151.8 109 67.0
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 5.4e-35 151.0 109 67.9
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 7.1e-35 150.6 109 66.1
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 7.1e-35 150.6 111 64.9
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 1.2e-34 149.8 136 62.5
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 1.6e-34 149.4 128 60.2
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 1.6e-34 149.4 102 72.5
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 2.1e-34 149.1 110 68.2
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 3.5e-34 148.3 106 66.0
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 3.5e-34 148.3 108 68.5
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 7.9e-34 147.1 102 71.6
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 1.0e-33 146.7 109 63.3
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 1.3e-33 146.4 99 69.7
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 1.8e-33 146.0 111 64.9
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 3.0e-33 145.2 106 68.9
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 8.7e-33 143.7 111 61.3
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 3.3e-32 141.7 104 64.4
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 4.3e-32 141.4 112 66.1
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 5.6e-32 141.0 96 69.8
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 2.1e-31 139.0 102 68.6
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 2.8e-31 138.7 104 62.5
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 2.8e-31 138.7 111 64.9
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 3.7e-31 138.3 102 67.6
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 4.8e-31 137.9 101 68.3
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 6.2e-31 137.5 102 67.6
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 6.2e-31 137.5 99 67.7
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 8.1e-31 137.1 111 63.1
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 8.1e-31 137.1 101 68.3
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 1.1e-30 136.7 102 66.7
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 1.4e-30 136.3 111 64.9
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 1.4e-30 136.3 102 66.7
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 1.8e-30 136.0 101 67.3
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 2.4e-30 135.6 107 63.6
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 2.4e-30 135.6 107 63.6
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 4.0e-30 134.8 110 62.7
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 6.9e-30 134.0 105 65.7
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 9.0e-30 133.7 101 66.3
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 1.5e-29 132.9 111 62.2
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 2.0e-29 132.5 99 63.6
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 7.6e-29 130.6 105 63.8
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.7e-28 129.4 111 61.3
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 2.2e-28 129.0 105 62.9
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 2.2e-28 129.0 100 63.0
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 3.8e-28 128.3 105 62.9
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 3.8e-28 128.3 105 62.9
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 3.8e-28 128.3 105 62.9
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 4.9e-28 127.9 110 62.7
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 4.9e-28 127.9 110 62.7
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 4.9e-28 127.9 103 65.0
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 6.4e-28 127.5 110 61.8
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 6.4e-28 127.5 98 67.3
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 6.4e-28 127.5 98 67.3
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 8.4e-28 127.1 109 59.6
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.4e-27 126.3 109 60.6
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.9e-27 125.9 98 66.3
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.9e-27 125.9 98 66.3
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 4.2e-27 124.8 104 55.8
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 9.3e-27 123.6 103 61.2
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 1.3e-25 119.8 99 60.6
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 6.7e-25 117.5 99 65.7
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 2.5e-24 115.5 100 57.0
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 3.3e-24 115.2 103 57.3
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 2.8e-23 112.1 111 55.9
Haze_18895 Corylus avellana HOM05D005755 ORTHO05D007006 6.2e-23 110.9 86 68.6
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 1.4e-22 109.8 104 57.7
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 2.4e-22 109.0 103 54.4
Prupe.2G218400 Prunus persica HOM05D005755 ORTHO05D007006 7.6e-21 104.0 117 60.7
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 2.9e-20 102.1 83 60.2
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 1.1e-19 100.1 95 52.6
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 2.5e-19 99.0 99 50.5
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 4.2e-19 98.2 58 79.3
Lj3g0006677 Lotus japonicus HOM05D005755 ORTHO05D007006 7.9e-18 94.0 74 58.1
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 8.2e-15 84.0 102 43.1
Lj3g0023846 Lotus japonicus HOM05D005755 ORTHO05D007006 1.1e-14 83.6 73 56.2
HanXRQChr14g0436521 Helianthus annuus HOM05D005755 ORTHO05D007006 1.5e-13 79.7 72 51.4
ClCG08G001190 Citrullus lanatus HOM05D005755 ORTHO05D007006 2.1e-10 69.3 59 55.9
Oeu057237.1 Olea europaea HOM05D005755 ORTHO05D007006 4.6e-10 68.2 65 47.7
AL792U10010 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.4e-09 66.6 73 49.3
A02p12030 Brassica napus HOM05D005755 ORTHO05D007006 5.7e-08 61.2 67 49.3
SEGI_15077 Sequoiadendron giganteum HOM05D002017 ORTHO05D007006 9.7e-08 60.5 82 40.2
CBR_g23899 Chara braunii HOM05D005755 ORTHO05D007006 1.7e-07 59.7 96 37.5


User provided reference genes

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