Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 9.9e-186 653.3 327 100.0
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 2.5e-173 612.1 327 93.0
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 3.3e-173 611.7 327 92.4
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 2.0e-162 575.9 328 85.1
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.0e-162 575.9 328 85.1
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 4.5e-162 574.7 327 85.9
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.2e-161 572.4 328 84.5
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 1.5e-149 533.1 327 82.0
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 1.3e-148 530.0 326 81.0
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 3.7e-148 528.5 327 80.4
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 3.1e-147 525.4 328 80.5
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 2.6e-146 522.3 329 80.9
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 7.7e-146 520.8 323 78.6
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 1.7e-145 519.6 326 79.4
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 3.8e-145 518.5 326 78.5
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 1.5e-141 506.5 334 76.9
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 7.5e-141 504.2 328 74.7
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 9.7e-141 503.8 330 76.4
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 4.8e-140 501.5 324 75.9
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 1.4e-139 500.0 328 75.6
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 4.1e-139 498.4 324 75.3
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 1.2e-138 496.9 324 75.6
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 1.2e-138 496.9 323 75.5
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 1.2e-138 496.9 327 74.0
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 2.0e-138 496.1 326 75.5
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.7e-138 495.7 323 73.4
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 3.5e-138 495.4 324 75.6
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.7e-138 494.2 323 73.4
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 1.7e-137 493.0 327 72.8
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 2.2e-137 492.7 320 75.9
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 5.0e-137 491.5 324 73.5
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 8.5e-137 490.7 323 72.8
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 1.5e-136 490.0 323 73.4
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 1.5e-136 490.0 327 73.4
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.5e-136 490.0 327 72.8
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.5e-136 490.0 331 73.7
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.9e-136 489.6 330 74.5
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 5.5e-136 488.0 329 73.6
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.6e-135 486.5 328 75.0
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 1.6e-135 486.5 331 72.2
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 1.6e-135 486.5 326 74.2
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.1e-135 486.1 324 73.1
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 2.1e-135 486.1 327 71.3
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 3.6e-135 485.3 331 72.2
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 4.7e-135 485.0 321 75.1
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 6.1e-135 484.6 324 73.8
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 8.0e-135 484.2 324 75.0
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 1.0e-134 483.8 327 72.2
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.4e-134 483.4 329 72.6
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.4e-134 483.4 331 73.4
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 1.4e-134 483.4 322 74.2
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 1.8e-134 483.0 324 71.0
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 3.0e-134 482.3 329 72.9
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 3.0e-134 482.3 331 71.9
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 4.0e-134 481.9 325 72.3
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.0e-134 481.9 332 72.9
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 2.0e-133 479.6 324 70.4
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 7.5e-133 477.6 327 70.6
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 3.1e-131 472.2 320 70.6
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 3.1e-131 472.2 329 71.4
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 9.1e-131 470.7 321 70.7
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.7e-130 469.2 325 71.7
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 1.0e-129 467.2 320 69.7
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 2.3e-129 466.1 323 70.0
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.9e-129 465.7 329 70.5
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.8e-129 465.3 323 70.3
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 3.8e-129 465.3 318 73.0
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 3.8e-129 465.3 329 70.8
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 4.2e-128 461.8 323 69.7
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 9.5e-128 460.7 324 69.1
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.2e-127 460.3 371 64.4
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 1.6e-127 459.9 325 71.1
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 4.7e-127 458.4 329 72.0
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 8.0e-127 457.6 323 68.7
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.0e-126 457.2 323 72.4
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 2.3e-126 456.1 323 68.7
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 4.0e-126 455.3 328 71.6
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 6.8e-126 454.5 323 72.1
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 6.8e-126 454.5 324 68.8
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 8.9e-126 454.1 309 69.3
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 3.7e-124 448.7 331 68.9
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 4.9e-124 448.4 327 68.8
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 1.8e-123 446.4 327 68.2
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.8e-123 446.4 327 67.9
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 1.8e-123 446.4 325 67.1
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 1.8e-123 446.4 326 67.5
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 4.5e-122 441.8 327 70.3
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 7.8e-122 441.0 326 66.9
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 2.3e-121 439.5 327 65.7
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 3.9e-121 438.7 327 66.1
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.9e-120 436.4 327 65.4
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 2.5e-120 436.0 264 82.6
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 3.3e-120 435.6 327 66.1
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 4.3e-120 435.3 325 65.2
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 7.3e-120 434.5 279 77.8
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 9.5e-120 434.1 325 65.2
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 1.6e-119 433.3 327 67.0
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 6.1e-119 431.4 332 66.6
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.8e-118 429.9 322 68.3
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 3.1e-118 429.1 307 68.7
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 5.8e-117 424.9 326 65.0
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 9.8e-117 424.1 305 67.2
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 9.8e-117 424.1 320 65.9
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 4.9e-116 421.8 326 64.4
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 8.3e-116 421.0 327 65.1
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 9.2e-115 417.5 326 64.1
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 3.5e-114 415.6 418 56.2
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 6.6e-113 411.4 294 69.0
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 5.6e-112 408.3 325 63.1
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.2e-109 400.6 290 67.9
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 5.8e-109 398.3 256 77.7
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.3e-108 397.1 376 57.4
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 3.9e-105 385.6 325 58.8
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 4.3e-104 382.1 326 59.5
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 5.6e-104 381.7 547 42.4
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.3e-102 376.3 323 60.4
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 7.5e-101 371.3 289 62.3
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 6.0e-98 361.7 327 59.3
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 5.6e-96 355.1 685 36.2
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 3.8e-92 342.4 272 64.3
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 5.4e-91 338.6 263 60.8
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 7.1e-91 338.2 220 72.7
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 6.2e-87 325.1 310 53.9
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 3.8e-84 315.8 313 51.4
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 8.4e-84 314.7 313 51.4
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 9.3e-83 311.2 233 67.0
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.0e-81 307.8 258 62.0
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 3.6e-79 299.3 204 73.5
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 2.2e-76 290.0 308 48.4
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 6.9e-70 268.5 223 60.5
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 9.0e-70 268.1 177 75.1
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 2.3e-57 226.9 305 41.0
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 1.4e-46 191.0 196 48.5
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 1.7e-39 167.5 99 83.8
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 6.3e-39 165.6 96 83.3
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 1.9e-35 154.1 99 79.8
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 5.7e-32 142.5 86 81.4
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 6.5e-28 129.0 123 56.1
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.9e-27 127.5 75 74.7
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.6e-26 123.2 94 59.6
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.0e-25 121.7 94 59.6
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 3.4e-24 116.7 327 27.5
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 7.0e-22 109.0 71 76.1
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 8.0e-18 95.5 80 55.0
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 2.6e-16 90.5 63 71.4
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 1.0e-12 78.6 54 74.1
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 1.0e-12 78.6 54 74.1
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 1.3e-12 78.2 54 74.1
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 5.6e-11 72.8 56 64.3
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 2.8e-10 70.5 50 66.0
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 2.3e-09 67.4 53 67.9
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 6.8e-09 65.9 43 72.1
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 4.1e-06 56.6 29 82.8
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 4.1e-06 56.6 29 82.8
BcaC04g19837 Brassica carinata HOM05D004699 ORTHO05D092684 9.2e-06 55.5 47 66.0


User provided reference genes

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