Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 9.2e-219 763.5 442 100.0
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 2.5e-184 649.0 468 82.7
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 1.6e-170 603.2 467 77.9
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 2.2e-167 592.8 467 75.2
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 3.1e-166 589.0 467 75.2
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.0e-165 586.3 467 74.5
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.9e-161 572.0 467 73.7
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 9.1e-158 560.8 467 72.6
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 7.4e-152 541.2 449 72.8
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.4e-150 537.0 467 70.4
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 1.3e-148 530.4 491 65.6
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 3.8e-148 528.9 459 68.6
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 4.7e-146 521.9 463 68.7
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 1.4e-145 520.4 459 68.8
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 9.1e-142 507.7 443 68.4
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 9.1e-142 507.7 442 69.0
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 1.2e-141 507.3 443 68.4
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.0e-141 506.5 443 68.4
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.6e-138 496.9 440 67.0
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 1.2e-136 490.7 463 66.1
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 3.4e-136 489.2 441 67.1
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 4.4e-136 488.8 442 66.5
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 2.8e-135 486.1 461 66.6
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 2.4e-134 483.0 446 66.4
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 4.1e-134 482.3 462 63.9
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 2.3e-132 476.5 439 65.4
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 7.2e-131 471.5 442 65.6
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 1.2e-130 470.7 443 66.6
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 1.6e-130 470.3 457 64.3
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 3.0e-129 466.1 446 69.3
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 6.8e-129 464.9 438 64.4
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 6.8e-129 464.9 406 68.5
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 1.5e-128 463.8 467 61.2
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 2.6e-128 463.0 469 62.0
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 2.6e-128 463.0 442 64.5
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 3.4e-128 462.6 444 64.6
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 4.4e-128 462.2 443 64.8
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 2.9e-124 449.5 438 64.4
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 3.3e-123 446.0 357 73.1
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 5.2e-121 438.7 444 62.6
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 1.2e-120 437.6 442 62.0
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 1.3e-119 434.1 475 57.3
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 8.3e-119 431.4 446 61.9
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 9.2e-118 427.9 439 62.0
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.6e-117 425.6 454 60.1
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 3.0e-116 422.9 445 60.0
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 5.0e-116 422.2 454 59.9
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 6.6e-116 421.8 444 61.0
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 1.1e-115 421.0 443 60.9
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 1.1e-115 421.0 443 60.9
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.1e-115 421.0 444 60.8
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 2.5e-115 419.9 451 59.9
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 9.5e-115 417.9 456 59.9
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 1.2e-114 417.5 445 60.0
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 4.7e-114 415.6 471 56.9
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 1.1e-113 414.5 441 60.3
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 5.2e-113 412.1 444 58.6
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 6.8e-113 411.8 441 60.1
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 2.0e-112 410.2 439 59.9
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 5.8e-112 408.7 458 58.1
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 9.8e-112 407.9 447 59.1
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 1.7e-111 407.1 440 59.5
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 1.7e-111 407.1 445 58.9
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 4.9e-111 405.6 439 59.0
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 1.1e-110 404.4 440 58.9
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 2.4e-110 403.3 500 53.6
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 4.6e-109 399.1 446 58.5
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 1.3e-108 397.5 274 80.3
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 3.0e-108 396.4 437 58.6
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 5.1e-108 395.6 464 56.5
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 1.9e-107 393.7 653 46.2
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 3.6e-106 389.4 441 57.8
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 4.7e-106 389.0 432 57.2
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 4.7e-106 389.0 434 57.8
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 6.2e-106 388.7 433 58.0
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 3.1e-105 386.3 367 64.6
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 8.9e-105 384.8 465 55.9
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 3.7e-103 379.4 438 56.6
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 3.2e-102 376.3 446 56.1
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 3.5e-101 372.9 441 55.3
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 1.3e-100 370.9 439 56.3
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 4.3e-99 365.9 438 55.9
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 1.8e-97 360.5 426 58.7
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 2.4e-97 360.1 437 53.1
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 2.0e-96 357.1 299 66.9
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 3.4e-96 356.3 471 51.8
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 5.8e-96 355.5 438 54.6
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.4e-94 350.9 522 48.5
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 6.0e-93 345.5 438 52.5
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 5.6e-91 339.0 454 49.8
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 6.9e-89 332.0 425 52.9
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 6.0e-85 318.9 443 51.2
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 1.0e-84 318.2 458 50.2
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.3e-84 317.8 465 49.0
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 4.8e-82 309.3 435 48.5
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 2.4e-81 307.0 458 48.3
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 3.1e-81 306.6 256 71.9
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 1.5e-80 304.3 456 48.5
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 7.9e-77 292.0 455 49.2
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 1.8e-76 290.8 277 64.6
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 3.1e-73 280.0 428 49.5
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 9.3e-70 268.5 447 46.5
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 1.2e-69 268.1 273 56.4
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 1.0e-68 265.0 232 67.2
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 2.8e-66 256.9 349 51.6
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 1.9e-62 244.2 246 56.1
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 5.3e-57 226.1 309 50.5
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 3.3e-51 206.8 311 43.7
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 6.3e-50 202.6 277 45.8
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 1.4e-46 191.4 484 37.4
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 6.3e-42 176.0 490 35.9
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 2.5e-38 164.1 264 41.3
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 7.5e-35 152.5 166 60.8
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 5.9e-32 142.9 88 87.5
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.6e-29 134.8 262 41.2
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 1.1e-25 122.1 96 69.8
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 1.1e-25 122.1 96 69.8
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 5.9e-24 116.3 82 75.6
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 5.9e-24 116.3 82 75.6
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 3.8e-23 113.6 197 45.2
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 1.5e-22 111.7 362 33.4
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 1.8e-20 104.8 164 46.3
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.0e-19 101.3 153 47.7
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 5.4e-17 93.2 87 60.9
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 7.7e-16 89.4 258 31.8
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 1.4e-12 78.6 244 31.6
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 2.6e-11 74.3 50 74.0
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.7e-07 61.6 119 44.5
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 3.0e-07 60.8 179 37.4
Actinidia03037 Actinidia chinensis HOM05D005934 ORTHO05D005165 5.6e-06 56.6 141 36.2


User provided reference genes

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