Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 2.7e-150 535.4 296 100.0
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 1.4e-133 479.9 295 83.4
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 8.8e-133 477.2 301 81.4
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 3.7e-131 471.9 296 81.1
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 7.0e-130 467.6 296 82.4
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 2.0e-129 466.1 296 79.7
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 2.7e-129 465.7 296 79.4
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 3.5e-129 465.3 296 79.7
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 4.5e-129 464.9 296 79.4
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.3e-128 463.4 296 79.7
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 9.2e-122 440.7 294 75.5
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.5e-119 433.3 296 75.7
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 1.9e-119 433.0 229 89.1
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 2.5e-119 432.6 296 78.7
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 3.3e-119 432.2 295 72.5
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 4.3e-119 431.8 296 73.3
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 4.3e-119 431.8 296 73.3
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 7.3e-119 431.0 295 72.2
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 1.6e-118 429.9 297 71.7
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 2.1e-118 429.5 296 73.6
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 2.8e-118 429.1 294 72.1
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 2.8e-118 429.1 291 72.9
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 4.7e-118 428.3 300 73.0
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.4e-117 426.8 290 71.4
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 2.3e-117 426.0 294 72.1
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 5.2e-117 424.9 237 83.5
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 5.8e-116 421.4 226 87.6
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 5.8e-116 421.4 229 86.5
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 5.8e-116 421.4 297 70.0
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 6.4e-115 417.9 291 70.4
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 5.4e-114 414.8 229 84.3
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 7.8e-113 411.0 233 83.3
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 6.6e-112 407.9 290 70.3
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 8.6e-112 407.5 227 82.8
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 8.6e-112 407.5 297 68.7
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 1.1e-111 407.1 228 84.6
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 1.5e-111 406.8 296 69.3
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 4.3e-111 405.2 226 84.5
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 4.3e-111 405.2 299 68.6
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 5.6e-111 404.8 239 80.8
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 5.6e-111 404.8 291 69.8
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 5.6e-111 404.8 295 68.5
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 2.3e-109 399.4 294 67.7
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 4.0e-109 398.7 232 79.3
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 5.2e-109 398.3 223 83.9
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 8.9e-109 397.5 232 78.9
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 2.0e-108 396.4 298 70.5
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 4.4e-108 395.2 227 80.6
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 5.8e-108 394.8 224 82.1
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 1.3e-107 393.7 238 79.0
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 4.9e-107 391.7 225 81.3
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 8.3e-107 391.0 228 78.9
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 1.9e-106 389.8 232 78.4
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 1.9e-106 389.8 228 79.4
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 2.4e-106 389.4 296 66.6
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 7.1e-106 387.9 231 78.4
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 9.2e-106 387.5 235 78.3
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 1.2e-105 387.1 225 78.2
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 2.1e-105 386.3 224 80.8
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 2.1e-105 386.3 291 66.3
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 2.7e-105 386.0 232 78.9
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 2.7e-105 386.0 224 79.5
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 2.7e-105 386.0 226 80.1
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 2.7e-105 386.0 241 76.8
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 4.6e-105 385.2 229 78.6
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 6.0e-105 384.8 225 80.0
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 7.8e-105 384.4 229 78.2
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 3.0e-104 382.5 290 65.9
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 8.6e-104 380.9 290 65.5
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 1.1e-103 380.6 231 77.9
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 1.1e-103 380.6 231 76.2
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 1.5e-103 380.2 226 80.1
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 4.3e-103 378.6 298 65.1
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 7.3e-103 377.9 298 64.8
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 9.5e-103 377.5 231 77.5
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 9.5e-103 377.5 231 77.5
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 1.6e-102 376.7 236 77.5
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 2.8e-102 375.9 293 66.6
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 2.8e-102 375.9 265 71.3
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 3.6e-102 375.6 300 64.3
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 3.1e-101 372.5 235 74.0
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 3.1e-101 372.5 222 77.9
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 6.8e-101 371.3 227 76.2
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 8.9e-101 370.9 297 60.6
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 1.5e-100 370.2 229 73.8
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 9.9e-100 367.5 293 65.2
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 9.9e-100 367.5 222 76.6
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 3.8e-99 365.5 300 62.0
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 8.4e-99 364.4 295 63.1
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 3.2e-98 362.5 242 72.3
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 2.7e-97 359.4 250 69.6
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 6.0e-97 358.2 227 75.3
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 1.9e-95 353.2 232 75.0
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 3.3e-95 352.4 296 61.8
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 7.3e-95 351.3 236 71.6
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 8.7e-88 327.8 293 59.4
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 1.3e-86 323.9 224 69.6
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 4.8e-86 322.0 207 73.4
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 6.2e-86 321.6 229 65.1
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 6.2e-86 321.6 230 65.2
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 8.1e-86 321.2 224 65.2
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 9.0e-85 317.8 239 66.5
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 2.6e-84 316.2 174 85.1
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 2.2e-83 313.2 230 67.4
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 2.4e-82 309.7 173 85.0
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 1.2e-81 307.4 225 66.7
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.6e-81 307.0 169 84.0
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 1.6e-81 307.0 231 64.1
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 4.6e-81 305.4 245 66.9
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 7.9e-81 304.7 300 55.0
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 1.8e-80 303.5 230 60.0
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 3.0e-80 302.8 300 54.7
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 5.3e-77 292.0 229 62.9
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 4.5e-76 288.9 167 81.4
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 7.4e-71 271.6 210 61.4
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 2.8e-70 269.6 166 75.3
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 1.1e-66 257.7 164 74.4
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 1.4e-58 230.7 141 77.3
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 9.3e-58 228.0 136 75.7
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 1.2e-57 227.6 157 66.2
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 4.8e-54 215.7 203 58.6
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 1.4e-53 214.2 141 71.6
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 2.2e-51 206.8 147 67.3
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 1.4e-50 204.1 231 47.2
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 2.6e-47 193.4 169 61.5
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 5.7e-47 192.2 205 55.1
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 1.2e-44 184.5 210 47.1
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 3.4e-44 183.0 133 64.7
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 1.4e-32 144.4 131 61.1
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 2.6e-31 140.2 91 69.2
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 5.5e-26 122.5 90 63.3
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 1.2e-25 121.3 133 53.4
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-20 104.8 127 47.2
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 2.5e-18 97.1 82 59.8
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 1.8e-13 80.9 119 38.7
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 9.2e-13 78.6 115 40.0
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 7.3e-10 68.9 75 46.7
Actinidia37356 Actinidia chinensis HOM05D002510 ORTHO05D006928 1.0e-08 65.1 54 57.4
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 8.9e-08 62.0 86 37.2


User provided reference genes

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