Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G212200 Prunus persica HOM05D006193 ORTHO05D007808 4.3e-65 251.1 123 100.0
MD01G1107500 Malus domestica HOM05D006193 ORTHO05D007808 5.6e-49 197.6 122 78.7
Ciclev10033053m.g Citrus clementina HOM05D006193 ORTHO05D007808 9.6e-49 196.8 117 79.5
Duzib114G0385 Durio zibethinus HOM05D006193 ORTHO05D007808 9.6e-49 196.8 105 87.6
Thecc.10G076000 Theobroma cacao HOM05D006193 ORTHO05D007808 9.6e-49 196.8 120 79.2
Manes.10G047101 Manihot esculenta HOM05D006193 ORTHO05D007808 2.8e-48 195.3 105 84.8
Atru.chr12.797 Acer truncatum HOM05D006193 ORTHO05D007808 4.8e-48 194.5 116 77.6
RcHm_v2.0_Chr1g0363061 Rosa chinensis HOM05D006193 ORTHO05D007808 4.8e-48 194.5 117 79.5
COL.COLO4_28414 Corchorus olitorius HOM05D006193 ORTHO05D007808 2.4e-47 192.2 104 84.6
FvH4_7g19210 Fragaria vesca HOM05D006193 ORTHO05D007808 2.4e-47 192.2 122 77.0
Gohir.D06G175300 Gossypium hirsutum HOM05D006193 ORTHO05D007808 3.1e-47 191.8 105 82.9
Gorai.010G205700 Gossypium raimondii HOM05D006193 ORTHO05D007808 3.1e-47 191.8 105 82.9
Haze_16878 Corylus avellana HOM05D006193 ORTHO05D007808 9.0e-47 190.3 136 66.2
Cfa001656 Carpinus fangiana HOM05D006193 ORTHO05D007808 1.5e-46 189.5 105 80.0
Gohir.A06G167900 Gossypium hirsutum HOM05D006193 ORTHO05D007808 3.4e-46 188.3 104 81.7
Cfa001990 Carpinus fangiana HOM05D006193 ORTHO05D007808 4.5e-46 188.0 105 79.0
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 4.5e-46 188.0 122 75.4
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 4.5e-46 188.0 122 75.4
CSS0007064 Camellia sinensis var. sinensis HOM05D006193 ORTHO05D007808 5.8e-46 187.6 139 67.6
Actinidia38857 Actinidia chinensis HOM05D006193 ORTHO05D007808 7.6e-46 187.2 129 69.8
TWI63G1140 Tripterygium wilfordii HOM05D006193 ORTHO05D007808 9.9e-46 186.8 117 77.8
Thhalv10026557m.g Eutrema salsugineum HOM05D006193 ORTHO05D007808 1.3e-45 186.4 131 68.7
CiPaw.02G173400 Carya illinoinensis HOM05D006193 ORTHO05D007808 1.7e-45 186.0 101 81.2
TAR623G1160 Trochodendron aralioides HOM05D006193 ORTHO05D007808 2.2e-45 185.7 105 80.0
BcaB04g18121 Brassica carinata HOM05D006193 ORTHO05D007808 2.9e-45 185.3 118 72.9
AT4G14145 Arabidopsis thaliana HOM05D006193 ORTHO05D007808 6.4e-45 184.1 105 80.0
Carub.0007s2828 Capsella rubella HOM05D006193 ORTHO05D007808 6.4e-45 184.1 116 75.0
SalBow4G2149 Salvia bowleyana HOM05D006193 ORTHO05D007808 6.4e-45 184.1 111 77.5
THA.LOC104808680 Tarenaya hassleriana HOM05D006193 ORTHO05D007808 8.4e-45 183.7 119 73.9
AL7G42250 Arabidopsis lyrata HOM05D006193 ORTHO05D007808 1.4e-44 183.0 105 79.0
Sp7g11980 Schrenkiella parvula HOM05D006193 ORTHO05D007808 1.4e-44 183.0 105 80.0
TAR369G0988 Trochodendron aralioides HOM05D006193 ORTHO05D007808 1.4e-44 183.0 105 79.0
MSTRG.27474 Avicennia marina HOM05D006193 ORTHO05D007808 1.9e-44 182.6 108 79.6
BolC8t48104H Brassica oleracea HOM05D006193 ORTHO05D007808 2.4e-44 182.2 127 70.9
BraA08t33036Z Brassica rapa HOM05D006193 ORTHO05D007808 3.2e-44 181.8 127 70.9
Migut.F01979 Erythranthe guttata HOM05D006193 ORTHO05D007808 3.2e-44 181.8 100 85.0
Lalb_Chr01g0009491 Lupinus albus HOM05D006193 ORTHO05D007808 3.2e-44 181.8 121 71.1
Nn2g10831 Nelumbo nucifera HOM05D006193 ORTHO05D007808 3.2e-44 181.8 112 76.8
BcaC07g37722 Brassica carinata HOM05D006193 ORTHO05D007808 5.4e-44 181.0 125 71.2
A08p10360 Brassica napus HOM05D006193 ORTHO05D007808 5.4e-44 181.0 104 79.8
Duzib128G0799 Durio zibethinus HOM05D006193 ORTHO05D007808 5.4e-44 181.0 115 74.8
Migut.D01650 Erythranthe guttata HOM05D006193 ORTHO05D007808 5.4e-44 181.0 100 85.0
Eucgr.J01081 Eucalyptus grandis HOM05D006193 ORTHO05D007808 5.4e-44 181.0 127 65.4
HanXRQChr08g0229761 Helianthus annuus HOM05D006193 ORTHO05D007808 7.1e-44 180.6 114 74.6
HanXRQChr01g0023971 Helianthus annuus HOM05D006193 ORTHO05D007808 1.2e-43 179.9 101 80.2
Glyma.20G180500 Glycine max HOM05D006193 ORTHO05D007808 1.6e-43 179.5 118 71.2
CANSAT54G0886 Cannabis sativa HOM05D006193 ORTHO05D007808 2.1e-43 179.1 117 74.4
PGR044G2737 Punica granatum HOM05D006193 ORTHO05D007808 2.1e-43 179.1 101 79.2
ECA248G2014 Erigeron canadensis HOM05D006193 ORTHO05D007808 2.7e-43 178.7 101 79.2
Lsat_1_v5_gn_1_77620 Lactuca sativa HOM05D006193 ORTHO05D007808 2.7e-43 178.7 101 79.2
Phvul.007G095900 Phaseolus vulgaris HOM05D006193 ORTHO05D007808 2.7e-43 178.7 118 69.5
Sed0026413 Sechium edule HOM05D006193 ORTHO05D007808 2.7e-43 178.7 103 78.6
Glyma.10G210100 Glycine max HOM05D006193 ORTHO05D007808 3.5e-43 178.3 118 70.3
Potri.010G223700 Populus trichocarpa HOM05D006193 ORTHO05D007808 3.5e-43 178.3 131 66.4
arahy.Tifrunner.gnm1.ann1.4G5N71 Arachis hypogaea HOM05D006193 ORTHO05D007808 4.6e-43 177.9 107 74.8
Lj5g0007819 Lotus japonicus HOM05D006193 ORTHO05D007808 6.0e-43 177.6 114 71.9
QL08p055470 Quercus lobata HOM05D006193 ORTHO05D007808 6.0e-43 177.6 131 67.9
Sed0026653 Sechium edule HOM05D006193 ORTHO05D007808 6.0e-43 177.6 103 78.6
SGA_v2.0_scaffold355G49780 Striga asiatica HOM05D006193 ORTHO05D007808 6.0e-43 177.6 102 79.4
VMungo0720G0734 Vigna mungo HOM05D006193 ORTHO05D007808 6.0e-43 177.6 118 69.5
CARHR220160 Cardamine hirsuta HOM05D006193 ORTHO05D007808 7.9e-43 177.2 113 75.2
MBI07_g44648_MAGBIO Magnolia biondii HOM05D006193 ORTHO05D007808 2.3e-42 175.6 104 76.9
arahy.Tifrunner.gnm1.ann1.889ECD Arachis hypogaea HOM05D006193 ORTHO05D007808 5.1e-42 174.5 107 73.8
Aa31LG9G3240 Aethionema arabicum HOM05D006193 ORTHO05D007808 6.7e-42 174.1 117 70.1
Cc02_g11260 Coffea canephora HOM05D006193 ORTHO05D007808 1.1e-41 173.3 121 70.2
DCAR_016552 Daucus carota HOM05D006193 ORTHO05D007808 1.1e-41 173.3 103 75.7
PSO210G4078 Papaver somniferum HOM05D006193 ORTHO05D007808 1.1e-41 173.3 101 77.2
PSO832G3015 Papaver somniferum HOM05D006193 ORTHO05D007808 1.5e-41 172.9 101 76.2
BcaC01g00219 Brassica carinata HOM05D006193 ORTHO05D007808 1.9e-41 172.6 108 72.2
TPR.G1973 Trifolium pratense HOM05D006193 ORTHO05D007808 1.9e-41 172.6 102 75.5
FAN03G1544 Fragaria x ananassa HOM05D006193 ORTHO05D007808 7.4e-41 170.6 97 82.5
Os03g0288400 Oryza sativa ssp. japonica HOM05D006193 ORTHO05D007808 9.6e-41 170.2 118 68.6
Peaxi162Scf00370g00117 Petunia axillaris HOM05D006193 ORTHO05D007808 9.6e-41 170.2 102 77.5
Solyc03g007490.3 Solanum lycopersicum HOM05D006193 ORTHO05D007808 1.6e-40 169.5 102 77.5
Sopen03g003450 Solanum pennellii HOM05D006193 ORTHO05D007808 1.6e-40 169.5 102 77.5
PGSC0003DMG400009070 Solanum tuberosum HOM05D006193 ORTHO05D007808 1.6e-40 169.5 102 77.5
Nitab4.5_0000071g0090 Nicotiana tabacum HOM05D006193 ORTHO05D007808 2.8e-40 168.7 100 78.0
Nitab4.5_0006507g0010 Nicotiana tabacum HOM05D006193 ORTHO05D007808 2.8e-40 168.7 100 78.0
CAN.G108.21 Capsicum annuum HOM05D006193 ORTHO05D007808 6.2e-40 167.5 102 75.5
Peaxi162Scf00011g01839 Petunia axillaris HOM05D006193 ORTHO05D007808 6.2e-40 167.5 102 75.5
Hund05693 Selenicereus undatus HOM05D006193 ORTHO05D007808 1.1e-39 166.8 105 73.3
BraA08t34379Z Brassica rapa HOM05D006193 ORTHO05D007808 1.8e-39 166.0 119 64.7
ATR0329G030 Amborella trichopoda HOM05D006193 ORTHO05D007808 2.4e-39 165.6 103 69.9
A08p24240 Brassica napus HOM05D006193 ORTHO05D007808 4.0e-39 164.9 98 75.5
unitig_37.g12308 Utricularia gibba HOM05D006193 ORTHO05D007808 4.0e-39 164.9 100 74.0
Aqoxy1G03645 Aquilegia oxysepala HOM05D006193 ORTHO05D007808 6.9e-39 164.1 118 66.1
ClCG05G021080 Citrullus lanatus HOM05D006193 ORTHO05D007808 9.0e-39 163.7 140 59.3
Oeu014384.2 Olea europaea HOM05D006193 ORTHO05D007808 9.0e-39 163.7 128 64.1
Zm00001eb062340 Zea mays HOM05D006193 ORTHO05D007808 1.2e-38 163.3 99 74.7
Oeu042739.1 Olea europaea HOM05D006193 ORTHO05D007808 2.0e-38 162.5 115 68.7
SGA_v2.0_scaffold250G44987 Striga asiatica HOM05D006193 ORTHO05D007808 2.0e-38 162.5 100 73.0
MELO3C012421.2 Cucumis melo HOM05D006193 ORTHO05D007808 2.6e-38 162.2 143 58.0
SGA_v2.0_scaffold24G10658 Striga asiatica HOM05D006193 ORTHO05D007808 5.8e-38 161.0 97 76.3
HPP92_011207 Vanilla planifolia HOM05D006193 ORTHO05D007808 5.8e-38 161.0 102 70.6
CiPaw.16G031600 Carya illinoinensis HOM05D006193 ORTHO05D007808 7.6e-38 160.6 91 80.2
GSVIVG01016260001 Vitis vinifera HOM05D006193 ORTHO05D007808 2.9e-37 158.7 115 60.0
Sc20g0001780 Simmondsia chinensis HOM05D006193 ORTHO05D007808 3.8e-37 158.3 134 59.7
Sabra10G0173000 Salix brachista HOM05D006193 ORTHO05D007808 8.4e-37 157.1 170 50.0
Rhsim03G0119300 Rhododendron simsii HOM05D006193 ORTHO05D007808 4.2e-36 154.8 179 49.2
Aqoxy1G03181 Aquilegia oxysepala HOM05D006193 ORTHO05D007808 3.5e-35 151.8 104 69.2
CDE03G0070 Ceratophyllum demersum HOM05D006193 ORTHO05D007808 7.9e-35 150.6 100 64.0
Ca_10561_v3 Cicer arietinum L. HOM05D006193 ORTHO05D007808 2.8e-32 142.1 87 77.0
arahy.Tifrunner.gnm1.ann1.N5AHK9 Arachis hypogaea HOM05D006193 ORTHO05D007808 3.7e-32 141.7 88 72.7
arahy.Tifrunner.gnm1.ann1.D81QGL Arachis hypogaea HOM05D006193 ORTHO05D007808 1.8e-31 139.4 79 78.5
EL10Ac7g18239 Beta vulgaris HOM05D006193 ORTHO05D007808 3.1e-31 138.7 127 55.9
Psat6g182760 Pisum sativum HOM05D006193 ORTHO05D007808 7.6e-30 134.0 79 75.9
FAN19G2294 Fragaria x ananassa HOM05D006193 ORTHO05D007808 1.7e-29 132.9 85 78.8
Ah.08g217480 Amaranthus hybridus HOM05D006193 ORTHO05D007808 2.9e-29 132.1 101 62.4
AUR62001381 Chenopodium quinoa HOM05D006193 ORTHO05D007808 5.5e-28 127.9 93 64.5
vmacro07063 Vaccinium macrocarpon HOM05D006193 ORTHO05D007808 1.6e-27 126.3 68 88.2
Mapoly0038s0090 Marchantia polymorpha HOM05D006193 ORTHO05D007808 1.5e-25 119.8 105 52.4
MBI07_g30981_MAGBIO Magnolia biondii HOM05D006193 ORTHO05D007808 9.7e-25 117.1 117 54.7
FAN06G3393 Fragaria x ananassa HOM05D006193 ORTHO05D007808 8.2e-24 114.0 66 81.8
Medtr1g094840 Medicago truncatula HOM05D006193 ORTHO05D007808 6.9e-23 110.9 71 69.0
CsaV3_5G036210 Cucumis sativus L. HOM05D006193 ORTHO05D007808 4.5e-22 108.2 66 74.2
BolC3t19959H Brassica oleracea HOM05D006193 ORTHO05D007808 1.4e-20 103.2 58 75.9
EL10Ac7g17093 Beta vulgaris HOM05D006193 ORTHO05D007808 2.7e-19 99.0 67 73.1
AagrBONN_evm.TU.Sc2ySwM_228.264 Anthoceros agrestis HOM05D006193 ORTHO05D007808 3.0e-18 95.5 103 45.6
SMO232G0066 Selaginella moellendorffii HOM05D006193 ORTHO05D007808 1.9e-17 92.8 98 40.8
Lsat_1_v5_gn_2_8120 Lactuca sativa HOM05D006193 ORTHO05D007808 3.3e-17 92.0 75 58.7
Pp3c5_20880 Physcomitrium patens HOM05D006193 ORTHO05D007808 6.9e-15 84.3 103 41.7
Potri.008G038500 Populus trichocarpa HOM05D006193 ORTHO05D007808 9.1e-15 84.0 57 70.2
SMO241G0021 Selaginella moellendorffii HOM05D006193 ORTHO05D007808 9.1e-15 84.0 90 38.9
Nitab4.5_0005501g0010 Nicotiana tabacum HOM05D006193 ORTHO05D007808 1.4e-12 76.6 79 50.6
vmacro07064 Vaccinium macrocarpon HOM05D006193 ORTHO05D007808 1.4e-10 70.1 36 80.6
CSS0043670 Camellia sinensis var. sinensis HOM05D006193 ORTHO05D007808 8.2e-08 60.8 68 50.0


User provided reference genes

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