Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 2235.7 1137 100.0
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1914.0 1159 84.3
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1881.3 1153 83.3
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1774.6 1143 79.4
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1758.4 1143 78.7
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1757.3 1143 78.5
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1756.9 1143 78.5
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1751.1 1143 78.7
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1748.4 1144 78.1
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1748.4 1143 78.7
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1740.7 1143 78.2
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1567.7 1134 70.6
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1505.7 1145 68.4
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1497.6 1136 68.2
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1492.6 1147 67.5
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1489.9 1139 67.7
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1485.7 1162 67.1
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1472.6 1150 67.2
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1469.9 1157 66.7
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1464.9 1128 67.4
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1457.2 1145 66.4
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1441.8 1138 65.7
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1430.6 1139 65.4
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1419.8 1147 64.8
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1404.0 1141 63.4
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1389.8 1158 63.0
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1387.9 1148 63.7
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1386.3 1148 63.9
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1385.5 1143 63.7
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1381.7 1144 63.4
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1378.6 1135 62.7
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1375.1 1141 62.9
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1373.2 1136 62.7
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1370.1 1148 63.2
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1367.4 1138 62.8
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1365.1 1135 62.4
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1362.8 1155 61.8
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1362.8 1150 62.8
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1357.8 1144 63.3
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1348.6 1144 63.0
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1342.8 1141 62.5
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1342.4 1176 61.1
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1341.6 1139 62.5
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1339.3 1147 61.8
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 0.0e+00 1329.7 1146 61.9
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1329.7 1147 59.6
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1323.1 1141 61.5
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1323.1 1139 61.5
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1322.8 1149 59.4
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 0.0e+00 1300.8 1136 61.4
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1300.0 1151 60.5
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1295.8 1150 60.1
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1294.6 1151 60.6
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 0.0e+00 1292.3 1102 62.8
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1292.3 1151 60.6
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 0.0e+00 1285.4 1021 63.8
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1285.0 1145 60.1
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1283.1 1146 58.3
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1280.8 1150 59.6
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1253.0 1154 57.9
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 0.0e+00 1247.3 1143 57.4
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 0.0e+00 1245.7 1134 57.9
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 0.0e+00 1238.8 1160 57.8
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 0.0e+00 1227.6 1139 59.1
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 0.0e+00 1223.4 1090 59.3
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1221.5 1148 57.4
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 0.0e+00 1214.9 1150 56.2
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 0.0e+00 1212.6 1146 55.9
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 0.0e+00 1205.7 1163 57.2
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 0.0e+00 1203.3 1153 55.8
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 0.0e+00 1199.9 1150 55.7
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 0.0e+00 1199.9 1154 55.1
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 0.0e+00 1195.6 1150 55.6
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 0.0e+00 1194.9 1147 56.2
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 0.0e+00 1191.4 1148 55.0
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 0.0e+00 1182.5 1139 56.3
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 0.0e+00 1175.6 1156 55.1
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 0.0e+00 1161.7 1033 59.8
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 0.0e+00 1161.7 1149 54.0
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 0.0e+00 1153.7 1140 54.2
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 0.0e+00 1149.4 1138 53.8
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1148.3 1142 54.3
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1147.9 1138 54.0
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 0.0e+00 1147.5 1142 54.3
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 0.0e+00 1144.4 1162 54.0
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 0.0e+00 1132.5 1186 52.2
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 0.0e+00 1104.4 1119 53.5
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 0.0e+00 1083.2 1143 51.7
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 9.1e-303 1043.9 915 60.8
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-293 1013.4 1167 49.6
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 5.9e-286 988.0 1130 49.8
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 2.6e-281 972.6 646 76.5
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 2.2e-280 969.5 772 63.6
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 2.1e-275 953.0 656 73.8
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 3.5e-254 882.5 1170 45.0
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 6.4e-248 861.7 651 69.3
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 3.6e-243 845.9 1147 43.9
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 2.9e-224 783.1 651 62.5
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 3.9e-221 772.7 564 70.9
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 5.6e-220 768.8 650 61.1
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 2.6e-217 760.0 1169 41.0
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 2.2e-216 756.9 1216 38.6
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 4.9e-216 755.7 617 63.7
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 6.9e-210 735.3 1235 38.4
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 4.2e-207 726.1 567 66.3
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 2.4e-178 630.6 469 72.3
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 5.0e-176 622.9 716 48.6
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 4.7e-174 616.3 648 50.9
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 1.0e-165 588.6 517 59.4
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 2.7e-161 573.9 501 61.3
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 6.8e-149 532.7 490 59.0
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 7.9e-89 333.2 1612 24.0
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 2.4e-85 321.6 521 39.7
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.3e-78 299.3 742 34.1
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 3.2e-74 284.6 279 55.9
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-71 275.0 592 32.9
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 1.8e-69 268.9 554 33.2
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 3.5e-60 238.0 482 33.2
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 5.9e-60 237.3 381 41.2
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 4.7e-57 227.6 561 30.3
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 7.5e-47 193.7 675 27.4
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 7.5e-47 193.7 675 27.4
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-44 186.0 523 29.8
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-41 176.0 173 51.4
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-38 166.4 219 44.7
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 4.9e-38 164.5 369 32.0
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 3.3e-34 151.8 266 36.1
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-33 149.8 211 43.6
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 1.7e-27 129.4 120 55.8
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 2.3e-27 129.0 150 48.0
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 6.6e-27 127.5 215 37.7
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 8.6e-27 127.1 148 47.3
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 5.8e-23 114.4 105 57.1
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 1.7e-22 112.8 104 51.9
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 9.2e-21 107.1 148 44.6
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 2.7e-20 105.5 240 29.6
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 7.8e-20 104.0 122 44.3
Haze_13501 Corylus avellana HOM05D004911 ORTHO05D005930 1.7e-19 102.8 75 65.3
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 9.6e-18 97.1 202 32.7
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 9.6e-18 97.1 202 32.7
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 8.9e-16 90.5 53 77.4
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 1.1e-13 83.6 58 63.8
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 1.4e-13 83.2 54 70.4
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 6.2e-09 67.8 88 40.9
SHI52879 Sapria himalayana HOM05D004911 ORTHO05D005930 1.7e-06 59.7 154 31.2


User provided reference genes

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