Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 1.0e-244 850.5 793 100.0
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 1.2e-155 554.7 802 76.2
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 1.9e-153 547.4 631 82.1
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 6.0e-152 542.3 628 79.5
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 1.3e-151 541.2 614 80.6
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.7e-151 540.8 614 79.6
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 8.7e-151 538.5 628 79.1
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.3e-146 524.6 617 73.9
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 3.8e-146 523.1 650 72.0
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 1.1e-145 521.5 653 71.1
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 2.7e-144 516.9 666 70.1
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 6.9e-140 502.3 674 74.9
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 3.8e-138 496.5 472 68.4
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 9.6e-134 481.9 640 72.5
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 8.1e-133 478.8 648 69.4
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 1.5e-131 474.6 649 75.7
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 3.8e-130 469.9 656 67.7
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 4.9e-130 469.5 651 67.6
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 6.5e-130 469.2 659 71.9
MD01G1096200 Malus domestica HOM05D006232 ORTHO05D007746 6.5e-130 469.2 533 84.4
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 8.4e-130 468.8 656 67.7
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 1.9e-129 467.6 657 67.1
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 3.2e-129 466.8 649 75.2
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 3.0e-127 460.3 625 67.2
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 1.1e-124 451.8 635 67.9
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 6.9e-124 449.1 681 63.4
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 9.0e-124 448.7 643 66.7
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 1.5e-123 448.0 640 67.8
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 3.4e-123 446.8 635 67.7
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 3.4e-123 446.8 635 70.2
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 5.0e-122 443.0 643 49.8
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 8.4e-122 442.2 663 69.4
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 1.8e-119 434.5 657 65.6
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 2.3e-119 434.1 662 63.1
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 6.7e-119 432.6 668 61.5
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 1.1e-118 431.8 644 72.2
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 4.3e-118 429.9 659 48.3
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 1.1e-116 425.2 644 64.9
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 2.6e-115 420.6 630 73.3
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 5.0e-114 416.4 660 50.9
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 6.5e-114 416.0 652 64.6
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 4.2e-113 413.3 654 62.2
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 2.7e-112 410.6 680 62.4
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 3.6e-112 410.2 652 62.6
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 1.8e-111 407.9 650 62.3
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 2.3e-111 407.5 650 61.8
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 5.1e-111 406.4 660 63.6
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 6.7e-111 406.0 661 43.6
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 3.3e-110 403.7 680 61.6
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 4.3e-110 403.3 683 61.8
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 9.7e-110 402.1 660 51.8
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 1.3e-109 401.7 672 51.0
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 2.8e-109 400.6 656 63.1
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 8.2e-109 399.1 684 61.8
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 1.1e-108 398.7 668 62.7
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 3.1e-108 397.1 644 54.5
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 7.7e-107 392.5 682 63.8
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 2.2e-106 391.0 681 61.1
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 8.5e-106 389.0 647 70.6
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 3.2e-105 387.1 641 62.4
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 1.2e-104 385.2 681 60.9
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 4.7e-104 383.3 666 53.8
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 7.9e-104 382.5 617 64.3
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 3.0e-103 380.6 656 59.0
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 3.9e-103 380.2 645 60.3
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 3.3e-102 377.1 624 72.0
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 4.8e-101 373.2 627 50.7
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 8.2e-101 372.5 336 92.9
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 4.1e-100 370.2 628 71.3
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 9.1e-100 369.0 670 59.6
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 1.0e-98 365.5 668 60.3
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 5.0e-98 363.2 671 52.6
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 3.2e-97 360.5 626 46.5
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 5.5e-97 359.8 625 47.4
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.6e-96 358.2 454 80.0
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 1.6e-96 358.2 625 46.7
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 4.7e-96 356.7 671 49.0
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 1.4e-95 355.1 644 50.3
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 1.8e-95 354.8 670 51.5
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 3.1e-92 344.0 668 59.3
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 5.3e-92 343.2 627 44.3
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 5.3e-92 343.2 631 60.2
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 1.2e-91 342.0 643 68.6
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 2.0e-91 341.3 482 73.4
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 3.8e-90 337.0 656 39.9
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 1.9e-89 334.7 664 38.0
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 2.1e-88 331.3 489 58.5
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 1.2e-86 325.5 666 47.0
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 3.7e-85 320.5 453 75.7
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 2.4e-76 291.2 563 61.1
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 3.4e-70 270.8 652 55.8
TAR371G0213 Trochodendron aralioides HOM05D006232 ORTHO05D007746 8.3e-69 266.2 300 64.3
FAN10G2235 Fragaria x ananassa HOM05D006232 ORTHO05D007746 5.9e-67 260.0 173 74.0
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 7.8e-67 259.6 651 53.8
Dinv01552 Davidia involucrata HOM05D006232 ORTHO05D007746 1.9e-65 255.0 292 51.4
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 4.0e-63 247.3 461 47.9
GSVIVG01010456001 Vitis vinifera HOM05D006232 ORTHO05D007746 5.8e-62 243.4 174 71.3
TAR371G1107 Trochodendron aralioides HOM05D006232 ORTHO05D007746 7.5e-62 243.0 177 67.2
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 1.3e-58 232.3 460 47.8
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 3.0e-58 231.1 268 50.4
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 5.2e-55 220.3 204 54.4
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 3.4e-54 217.6 203 58.1
Hma1.2p1_0074F.1_g038910 Hydrangea macrophylla HOM05D006232 ORTHO05D007746 1.9e-52 211.8 341 84.2
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 1.6e-51 208.8 288 43.8
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 1.1e-49 202.6 206 51.5
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 1.5e-49 202.2 477 48.0
MD01G1096300 Malus domestica HOM05D006232 ORTHO05D007746 2.3e-47 194.9 107 89.7
Os03g0712900 Oryza sativa ssp. japonica HOM05D006232 ORTHO05D007746 3.4e-46 191.0 205 46.8
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 2.2e-45 188.3 634 50.6
Nn6g33415 Nelumbo nucifera HOM05D006232 ORTHO05D007746 4.9e-45 187.2 162 58.6
Dinv01553 Davidia involucrata HOM05D006232 ORTHO05D007746 3.4e-38 164.5 107 73.8
Lj1P725T29 Lonicera japonica HOM05D006232 ORTHO05D007746 2.0e-30 138.7 115 59.1
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 5.4e-28 130.6 143 49.7
CAN.G395.52 Capsicum annuum HOM05D006232 ORTHO05D007746 1.5e-17 95.9 99 47.5
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 1.6e-16 92.4 229 30.1
unitig_62.g23853 Utricularia gibba HOM05D006232 ORTHO05D007746 4.9e-13 80.9 121 39.7
unitig_64.g29781 Utricularia gibba HOM05D006232 ORTHO05D007746 4.9e-13 80.9 121 39.7
Dinv15329 Davidia involucrata HOM05D006232 ORTHO05D007746 9.3e-12 76.6 43 81.4
Lj1P725T28 Lonicera japonica HOM05D006232 ORTHO05D007746 9.3e-12 76.6 45 80.0
MD01G1131700 Malus domestica HOM05D006232 ORTHO05D007746 9.3e-12 76.6 95 47.4
Sc02g0005770 Simmondsia chinensis HOM05D006232 ORTHO05D007746 8.7e-10 70.1 83 49.4
CAN.G395.53 Capsicum annuum HOM05D006232 ORTHO05D007746 1.9e-09 68.9 39 79.5
SGA_v2.0_scaffold4055G54421 Striga asiatica HOM05D006232 ORTHO05D007746 4.3e-09 67.8 43 72.1
VMungo0720G1459 Vigna mungo HOM05D012259 ORTHO05D008631 8.2e-08 63.5 49 61.2
GSVIVG01033052001 Vitis vinifera HOM05D007157 ORTHO05D009045 2.6e-06 58.5 274 22.3
BcaC01g01238 Brassica carinata HOM05D006232 ORTHO05D007746 7.6e-06 57.0 39 61.5


User provided reference genes

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