Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G201500 Prunus persica HOM05D000010 ORTHO05D336213 1.1e-30 136.0 69 100.0
Prupe.2G201600 Prunus persica HOM05D000010 ORTHO05D336049 1.2e-16 89.4 53 81.1
Prupe.2G202000 Prunus persica HOM05D000010 ORTHO05D016337 2.1e-08 62.0 51 62.7
Prupe.2G201800 Prunus persica HOM05D000010 ORTHO05D016337 1.8e-07 58.9 54 63.0
SalBow5G0868 Salvia bowleyana HOM05D000010 ORTHO05D000063 3.0e-07 58.2 43 60.5
SalBow5G4916 Salvia bowleyana HOM05D000010 ORTHO05D000063 3.0e-07 58.2 43 60.5
Potri.012G038100 Populus trichocarpa HOM05D000010 ORTHO05D000063 5.1e-07 57.4 49 55.1
Prupe.2G201300 Prunus persica HOM05D000010 ORTHO05D000001 6.7e-07 57.0 50 60.0
A05p32130 Brassica napus HOM05D000010 ORTHO05D000063 1.5e-06 55.8 39 64.1
BraA05t22042Z Brassica rapa HOM05D000010 ORTHO05D000063 1.5e-06 55.8 39 64.1
Ca_18568_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 1.5e-06 55.8 39 64.1
ClCG04G012500 Citrullus lanatus HOM05D000010 ORTHO05D000063 1.5e-06 55.8 39 64.1
MELO3C001959.2 Cucumis melo HOM05D000010 ORTHO05D000063 1.5e-06 55.8 39 64.1
CsaV3_1G005200 Cucumis sativus L. HOM05D000010 ORTHO05D000063 1.5e-06 55.8 39 64.1
MD01G1092200 Malus domestica HOM05D000010 ORTHO05D016337 1.5e-06 55.8 54 55.6
Peaxi162Scf00171g00619 Petunia axillaris HOM05D000010 ORTHO05D000063 1.5e-06 55.8 42 59.5
Psat1g031560 Pisum sativum HOM05D000010 ORTHO05D000063 1.5e-06 55.8 39 64.1
Sed0021151 Sechium edule HOM05D000010 ORTHO05D000063 1.5e-06 55.8 39 64.1
THA.LOC104821821 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 1.5e-06 55.8 39 66.7
BcaC05g28763 Brassica carinata HOM05D000010 ORTHO05D000063 1.9e-06 55.5 39 64.1
C05p48670 Brassica napus HOM05D000010 ORTHO05D000063 1.9e-06 55.5 39 64.1
BolC5t33602H Brassica oleracea HOM05D000010 ORTHO05D000063 1.9e-06 55.5 39 64.1
Migut.O00243 Erythranthe guttata HOM05D000010 ORTHO05D000063 2.5e-06 55.1 39 64.1
Eucgr.H00614 Eucalyptus grandis HOM05D000010 ORTHO05D000063 2.5e-06 55.1 39 64.1
FvH4_5g18130 Fragaria vesca HOM05D000010 ORTHO05D000063 2.5e-06 55.1 39 64.1
FAN04G1627 Fragaria x ananassa HOM05D000010 ORTHO05D000063 2.5e-06 55.1 39 64.1
FAN08G0540 Fragaria x ananassa HOM05D000010 ORTHO05D000063 2.5e-06 55.1 39 64.1
FAN13G2294 Fragaria x ananassa HOM05D000010 ORTHO05D000063 2.5e-06 55.1 39 64.1
FAN18G2434 Fragaria x ananassa HOM05D000010 ORTHO05D000063 2.5e-06 55.1 39 64.1
RcHm_v2.0_Chr7g0177481 Rosa chinensis HOM05D000010 ORTHO05D000063 2.5e-06 55.1 39 64.1
Atru.chr9.1580 Acer truncatum HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Actinidia35143 Actinidia chinensis HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Aa31LG8G4620 Aethionema arabicum HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
AL3G30860 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
AT3G17730 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
arahy.Tifrunner.gnm1.ann1.6RTE4A Arachis hypogaea HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
arahy.Tifrunner.gnm1.ann1.CRX62L Arachis hypogaea HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
BcaB04g20823 Brassica carinata HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
CANSAT01G1640 Cannabis sativa HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Carub.0003s1745 Capsella rubella HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
CAN.G637.17 Capsicum annuum HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
CARHR093060 Cardamine hirsuta HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Cfa020692 Carpinus fangiana HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
CiPaw.15G151500 Carya illinoinensis HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Ciclev10024520m.g Citrus clementina HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Cc04_g08930 Coffea canephora HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
COL.COLO4_16314 Corchorus olitorius HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Haze_18995 Corylus avellana HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Duzib205G1452 Durio zibethinus HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
ECA238G3614 Erigeron canadensis HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Thhalv10021408m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Glyma.09G167400 Glycine max HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Glyma.16G217400 Glycine max HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Gohir.A09G172200 Gossypium hirsutum HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Gorai.006G189600 Gossypium raimondii HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
HanXRQChr14g0432731 Helianthus annuus HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Hma1.2p1_0493F.1_g165040 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Lj2g0014362 Lotus japonicus HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
MD01G1092500 Malus domestica HOM05D000010 ORTHO05D016337 3.3e-06 54.7 54 55.6
MD01G1092600 Malus domestica HOM05D000010 ORTHO05D016337 3.3e-06 54.7 54 55.6
MD06G1236800 Malus domestica HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
MD14G1243700 Malus domestica HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Manes.02G220000 Manihot esculenta HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Medtr6g477900 Medicago truncatula HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Nitab4.5_0001180g0040 Nicotiana tabacum HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Nitab4.5_0005200g0010 Nicotiana tabacum HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Phvul.004G143100 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Potri.015G030200 Populus trichocarpa HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Prupe.5G241300 Prunus persica HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
PGR044G2597 Punica granatum HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
QL10p032295 Quercus lobata HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
QL10p032313 Quercus lobata HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Sp3g15850 Schrenkiella parvula HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Sc10g0008850 Simmondsia chinensis HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Sopen03g028890 Solanum pennellii HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
PGSC0003DMG400031054 Solanum tuberosum HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
Thecc.10G147000 Theobroma cacao HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
TPR.G24061 Trifolium pratense HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
TWI60G0347 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
TWI81G1073 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
VMungo0464G0121 Vigna mungo HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
GSVIVG01029392001 Vitis vinifera HOM05D000010 ORTHO05D000063 3.3e-06 54.7 39 64.1
HanXRQChr06g0183491 Helianthus annuus HOM05D000010 ORTHO05D000063 4.3e-06 54.3 39 61.5
Lsat_1_v5_gn_2_20040 Lactuca sativa HOM05D000010 ORTHO05D000063 5.6e-06 53.9 39 64.1
MD07G1162700 Malus domestica HOM05D000010 ORTHO05D016337 7.4e-06 53.5 52 59.6
MSTRG.23203 Avicennia marina HOM05D000010 ORTHO05D000063 9.6e-06 53.1 39 61.5
SGA_v2.0_scaffold25G10763 Striga asiatica HOM05D000010 ORTHO05D000063 9.6e-06 53.1 39 64.1
SGA_v2.0_scaffold90G27772 Striga asiatica HOM05D000010 ORTHO05D000063 9.6e-06 53.1 39 64.1
Zm00001eb197170 Zea mays HOM05D000010 ORTHO05D002079 9.6e-06 53.1 52 53.8


User provided reference genes

Program Settings