Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G201100 Prunus persica HOM05D006082 ORTHO05D007616 3.3e-127 458.4 230 100.0
MD01G1091900 Malus domestica HOM05D006082 ORTHO05D007616 3.8e-123 444.9 229 96.1
FAN06G3489 Fragaria x ananassa HOM05D006082 ORTHO05D007616 3.0e-112 408.7 230 89.6
FvH4_7g17940 Fragaria vesca HOM05D006082 ORTHO05D007616 2.5e-111 405.6 230 88.7
RcHm_v2.0_Chr1g0361381 Rosa chinensis HOM05D006082 ORTHO05D007616 4.3e-111 404.8 230 88.3
FAN06G1515 Fragaria x ananassa HOM05D006082 ORTHO05D007616 2.8e-110 402.1 236 87.3
FAN03G2817 Fragaria x ananassa HOM05D006082 ORTHO05D007616 2.9e-107 392.1 240 84.2
FAN10G2982 Fragaria x ananassa HOM05D006082 ORTHO05D007616 2.9e-99 365.5 243 79.8
FAN01G2730 Fragaria x ananassa HOM05D006082 ORTHO05D007616 1.5e-87 326.6 228 77.6
GSVIVG01027464001 Vitis vinifera HOM05D006082 ORTHO05D007616 4.2e-82 308.5 223 71.3
Duzib133G0864 Durio zibethinus HOM05D006082 ORTHO05D007616 4.4e-79 298.5 223 66.8
Gorai.007G114300 Gossypium raimondii HOM05D006082 ORTHO05D007616 1.7e-78 296.6 223 66.8
Gohir.A11G102200 Gossypium hirsutum HOM05D006082 ORTHO05D007616 2.2e-78 296.2 223 67.3
QL01p017595 Quercus lobata HOM05D006082 ORTHO05D007616 1.1e-77 293.9 221 68.3
Potri.014G107300 Populus trichocarpa HOM05D006082 ORTHO05D007616 1.4e-77 293.5 223 68.6
Ciclev10022037m.g Citrus clementina HOM05D006082 ORTHO05D007616 1.3e-75 287.0 223 66.8
Thecc.01G331100 Theobroma cacao HOM05D006082 ORTHO05D007616 5.0e-75 285.0 223 67.3
TAR375G0813 Trochodendron aralioides HOM05D006082 ORTHO05D007616 4.7e-73 278.5 220 65.9
Haze_15761 Corylus avellana HOM05D006082 ORTHO05D007616 8.0e-73 277.7 223 65.9
Atru.chr5.795 Acer truncatum HOM05D006082 ORTHO05D007616 5.7e-71 271.6 222 63.5
Actinidia33031 Actinidia chinensis HOM05D006082 ORTHO05D007616 5.7e-71 271.6 224 64.3
TWI14G1025 Tripterygium wilfordii HOM05D006082 ORTHO05D007616 7.5e-71 271.2 223 62.8
CANSAT56G1086 Cannabis sativa HOM05D006082 ORTHO05D007616 3.5e-68 262.3 202 68.3
Dinv04258 Davidia involucrata HOM05D006082 ORTHO05D007616 1.1e-66 257.3 223 60.1
ECA238G2330 Erigeron canadensis HOM05D006082 ORTHO05D007616 1.1e-66 257.3 220 59.1
TPR.G16094 Trifolium pratense HOM05D006082 ORTHO05D007616 2.5e-66 256.1 223 61.0
Lalb_Chr17g0343121 Lupinus albus HOM05D006082 ORTHO05D007616 2.1e-65 253.1 224 61.6
HanXRQChr14g0454421 Helianthus annuus HOM05D006082 ORTHO05D007616 3.6e-65 252.3 222 59.0
Phvul.001G121700 Phaseolus vulgaris HOM05D006082 ORTHO05D007616 8.0e-65 251.1 223 59.6
Lj1g0004702 Lotus japonicus HOM05D006082 ORTHO05D007616 1.0e-64 250.8 222 58.6
Eucgr.G03261 Eucalyptus grandis HOM05D006082 ORTHO05D007616 1.4e-64 250.4 222 58.1
Medtr7g089460 Medicago truncatula HOM05D006082 ORTHO05D007616 1.8e-64 250.0 223 60.1
Nn1g00467 Nelumbo nucifera HOM05D006082 ORTHO05D007616 5.2e-64 248.4 220 60.0
Psat3g079600 Pisum sativum HOM05D006082 ORTHO05D007616 6.8e-64 248.1 223 59.6
Glyma.19G129400 Glycine max HOM05D006082 ORTHO05D007616 2.6e-63 246.1 230 58.7
Glyma.03G126300 Glycine max HOM05D006082 ORTHO05D007616 3.4e-63 245.7 223 58.7
Gohir.D11G106800 Gossypium hirsutum HOM05D006082 ORTHO05D007616 9.8e-63 244.2 223 58.7
Migut.L00265 Erythranthe guttata HOM05D006082 ORTHO05D007616 2.2e-62 243.0 222 55.9
CAN.G691.19 Capsicum annuum HOM05D006082 ORTHO05D007616 3.1e-61 239.2 223 58.3
PGSC0003DMG400016241 Solanum tuberosum HOM05D006082 ORTHO05D007616 4.1e-61 238.8 223 57.8
PGR031G0479 Punica granatum HOM05D006082 ORTHO05D007616 5.4e-61 238.4 235 56.6
THA.LOC104815904 Tarenaya hassleriana HOM05D006082 ORTHO05D007616 5.4e-61 238.4 222 55.9
MSTRG.15681 Avicennia marina HOM05D006082 ORTHO05D007616 2.0e-60 236.5 222 55.9
Solyc11g008790.3 Solanum lycopersicum HOM05D006082 ORTHO05D007616 5.9e-60 235.0 223 57.4
Sopen11g004570 Solanum pennellii HOM05D006082 ORTHO05D007616 2.3e-59 233.0 223 57.0
BraA10t42369Z Brassica rapa HOM05D006082 ORTHO05D007616 1.5e-58 230.3 222 55.9
ATR1136G056 Amborella trichopoda HOM05D006082 ORTHO05D007616 1.9e-58 229.9 222 54.1
Cc03_g11310 Coffea canephora HOM05D006082 ORTHO05D007616 2.5e-58 229.6 222 55.4
CARHR250170 Cardamine hirsuta HOM05D006082 ORTHO05D007616 5.6e-58 228.4 223 55.6
Sp1g01290 Schrenkiella parvula HOM05D006082 ORTHO05D007616 7.3e-58 228.0 221 55.2
arahy.Tifrunner.gnm1.ann1.6SRZ86 Arachis hypogaea HOM05D006082 ORTHO05D007616 1.2e-57 227.3 223 55.6
BolC5t28877H Brassica oleracea HOM05D006082 ORTHO05D007616 2.1e-57 226.5 222 55.0
A10p00890 Brassica napus HOM05D006082 ORTHO05D007616 2.8e-57 226.1 222 55.0
AL1G11510 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 3.6e-57 225.7 222 55.0
Sp6g01450 Schrenkiella parvula HOM05D006082 ORTHO05D007616 3.6e-57 225.7 224 55.8
PSO675G6409 Papaver somniferum HOM05D006082 ORTHO05D007616 4.7e-57 225.3 223 55.6
arahy.Tifrunner.gnm1.ann1.9R6DDK Arachis hypogaea HOM05D006082 ORTHO05D007616 8.0e-57 224.6 223 54.7
Aqoxy5G00354 Aquilegia oxysepala HOM05D006082 ORTHO05D007616 1.4e-56 223.8 223 52.5
BcaB03g13546 Brassica carinata HOM05D006082 ORTHO05D007616 1.8e-56 223.4 222 54.1
C05p00920 Brassica napus HOM05D006082 ORTHO05D007616 1.8e-56 223.4 222 54.1
CANSAT56G0035 Cannabis sativa HOM05D006082 ORTHO05D007616 2.3e-56 223.0 202 61.9
PSO675G6921 Papaver somniferum HOM05D006082 ORTHO05D007616 2.3e-56 223.0 223 54.7
Carub.0001s0120 Capsella rubella HOM05D006082 ORTHO05D007616 3.1e-56 222.6 222 53.2
Ca_08380_v3 Cicer arietinum L. HOM05D006082 ORTHO05D007616 3.1e-56 222.6 197 60.9
AL6G51830 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 8.9e-56 221.1 219 53.9
C09p01160 Brassica napus HOM05D006082 ORTHO05D007616 8.9e-56 221.1 224 54.9
Carub.0006s3568 Capsella rubella HOM05D006082 ORTHO05D007616 8.9e-56 221.1 220 53.6
CsaV3_3G007110 Cucumis sativus L. HOM05D006082 ORTHO05D007616 8.9e-56 221.1 222 55.0
A09p01070 Brassica napus HOM05D006082 ORTHO05D007616 2.6e-55 219.5 224 54.9
Thhalv10028930m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 2.6e-55 219.5 223 53.4
MELO3C005932.2 Cucumis melo HOM05D006082 ORTHO05D007616 9.8e-55 217.6 228 54.4
CARHR001490 Cardamine hirsuta HOM05D006082 ORTHO05D007616 1.3e-54 217.2 222 52.3
HPP92_015681 Vanilla planifolia HOM05D006082 ORTHO05D007616 2.2e-54 216.5 217 51.2
ClCG05G000050 Citrullus lanatus HOM05D006082 ORTHO05D007616 3.7e-54 215.7 235 54.0
Manes.05G014900 Manihot esculenta HOM05D006082 ORTHO05D007616 8.3e-54 214.5 172 64.0
MD07G1162500 Malus domestica HOM05D006082 ORTHO05D007616 1.4e-53 213.8 148 74.3
CDE08G0270 Ceratophyllum demersum HOM05D006082 ORTHO05D007616 4.1e-53 212.2 223 50.2
Thhalv10008618m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 5.4e-53 211.8 220 54.1
CiPaw.01G087100 Carya illinoinensis HOM05D006082 ORTHO05D007616 2.0e-52 209.9 183 62.8
BolC9t53049H Brassica oleracea HOM05D006082 ORTHO05D007616 3.9e-51 205.7 253 48.6
BraA09t35778Z Brassica rapa HOM05D006082 ORTHO05D007616 8.6e-51 204.5 252 48.8
COL.COLO4_23067 Corchorus olitorius HOM05D006082 ORTHO05D007616 4.3e-50 202.2 143 66.4
Aa31LG1G10340 Aethionema arabicum HOM05D006082 ORTHO05D007616 9.5e-50 201.1 235 50.6
Os03g0784300 Oryza sativa ssp. japonica HOM05D006082 ORTHO05D007616 3.6e-49 199.1 217 49.8
AUR62016743 Chenopodium quinoa HOM05D006082 ORTHO05D007616 5.2e-48 195.3 221 48.0
Ah.01g019340 Amaranthus hybridus HOM05D006082 ORTHO05D007616 5.8e-47 191.8 221 46.6
AT4G01510 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 1.3e-46 190.7 193 53.9
unitig_899.g14456 Utricularia gibba HOM05D003044 ORTHO05D007616 6.4e-46 188.3 199 50.3
Nitab4.5_0000743g0220 Nicotiana tabacum HOM05D006082 ORTHO05D007616 3.2e-45 186.0 229 49.3
SEGI_04405 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 4.1e-45 185.7 217 47.0
vmacro11192 Vaccinium macrocarpon HOM05D006082 ORTHO05D007616 1.0e-43 181.0 307 42.0
MBI06_g35217_MAGBIO Magnolia biondii HOM05D006082 ORTHO05D007616 3.9e-43 179.1 218 49.1
Aa31LG5G1260 Aethionema arabicum HOM05D006082 ORTHO05D007616 5.1e-43 178.7 220 45.9
Lsat_1_v5_gn_2_88861 Lactuca sativa HOM05D006082 ORTHO05D007616 3.3e-42 176.0 198 52.0
Potri.002G181700 Populus trichocarpa HOM05D006082 ORTHO05D007616 2.2e-38 163.3 223 45.7
CSS0012451 Camellia sinensis var. sinensis HOM05D006082 ORTHO05D007616 3.7e-38 162.5 190 52.1
Zm00001eb059810 Zea mays HOM05D006082 ORTHO05D007616 4.1e-37 159.1 194 46.9
Peaxi162Scf00090g00046 Petunia axillaris HOM05D006082 ORTHO05D007616 7.1e-37 158.3 251 45.0
GSVIVG01003191001 Vitis vinifera HOM05D006082 ORTHO05D007616 1.3e-35 154.1 132 65.9
Sc24g0001860 Simmondsia chinensis HOM05D006082 ORTHO05D007616 8.6e-35 151.4 201 42.8
AT1G01020 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 1.9e-34 150.2 179 48.6
EL10Ac9g21719 Beta vulgaris HOM05D006082 ORTHO05D003517 2.8e-33 146.4 167 47.9
C05p00960 Brassica napus HOM05D006082 ORTHO05D007616 1.8e-32 143.7 306 34.3
Pp3c10_9330 Physcomitrium patens HOM05D006082 ORTHO05D007616 3.1e-32 142.9 216 43.1
Nitab4.5_0001677g0060 Nicotiana tabacum HOM05D006082 ORTHO05D007616 2.4e-29 133.3 279 37.6
BolC5t28880H Brassica oleracea HOM05D006082 ORTHO05D007616 4.2e-29 132.5 298 33.9
Migut.L00585 Erythranthe guttata HOM05D006082 ORTHO05D007616 4.2e-29 132.5 88 63.6
SEGI_20928 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 9.2e-29 131.3 137 48.9
Mapoly0050s0018 Marchantia polymorpha HOM05D006082 ORTHO05D007616 1.6e-28 130.6 221 37.1
AagrBONN_evm.TU.Sc2ySwM_340.22 Anthoceros agrestis HOM05D006082 ORTHO05D007616 6.0e-28 128.6 226 38.5
SMO367G0224 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 7.3e-26 121.7 213 38.0
DCAR_014739 Daucus carota HOM05D006082 ORTHO05D007616 2.1e-25 120.2 220 34.5
Hma1.2p1_0451F.1_g155800 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 8.1e-25 118.2 123 58.5
Hma1.2p1_0262F.1_g105255 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 2.4e-24 116.7 75 66.7
CBR_g1036 Chara braunii HOM05D006082 ORTHO05D007616 5.3e-24 115.5 233 31.8
Hma1.2p1_0451F.1_g155790 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 1.5e-23 114.0 73 67.1
Sed0024729 Sechium edule HOM05D006082 ORTHO05D007616 9.9e-23 111.3 120 57.5
MD07G1162600 Malus domestica HOM05D006082 ORTHO05D007616 8.4e-22 108.2 65 86.2
arahy.Tifrunner.gnm1.ann1.PGF6M0 Arachis hypogaea HOM05D006082 ORTHO05D007616 5.4e-21 105.5 244 32.4
GSVIVG01003186001 Vitis vinifera HOM05D006082 ORTHO05D007616 2.1e-20 103.6 76 75.0
QL03p043604 Quercus lobata HOM05D006082 ORTHO05D007616 1.0e-19 101.3 202 37.6
BcaC05g24597 Brassica carinata HOM05D006082 ORTHO05D007616 3.8e-14 82.8 196 31.1
C05p00940 Brassica napus HOM05D006082 ORTHO05D007616 1.9e-13 80.5 106 47.2
RcHm_v2.0_Chr1g0361671 Rosa chinensis HOM05D006082 ORTHO05D007616 2.4e-13 80.1 114 50.0
RcHm_v2.0_Chr1g0361451 Rosa chinensis HOM05D006082 ORTHO05D007616 1.8e-11 73.9 57 73.7
SMO230G0051 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 2.3e-11 73.6 168 32.7
RcHm_v2.0_Chr1g0333691 Rosa chinensis HOM05D006082 ORTHO05D007616 9.0e-08 61.6 34 85.3


User provided reference genes

Program Settings