Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G197800 Prunus persica HOM05D002391 ORTHO05D004870 0.0e+00 1418.7 733 100.0
Prupe.2G092100 Prunus persica HOM05D002391 ORTHO05D004870 0.0e+00 1345.5 735 95.6
FAN03G0415 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1263.4 734 88.0
MD07G1159900 Malus domestica HOM05D002391 ORTHO05D004870 0.0e+00 1261.5 733 89.4
FAN06G0341 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1259.6 734 87.7
FAN10G1672 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1259.6 734 87.9
FAN01G3049 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1258.4 734 87.6
FvH4_7g17670 Fragaria vesca HOM05D002391 ORTHO05D004870 0.0e+00 1256.5 734 87.6
FAN10G4291 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1256.5 734 87.6
FAN06G0379 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1255.4 734 87.5
CANSAT56G4423 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1209.1 730 85.1
CsaV3_6G008330 Cucumis sativus L. HOM05D002391 ORTHO05D004870 0.0e+00 1205.7 736 84.1
MELO3C022305.2 Cucumis melo HOM05D002391 ORTHO05D004870 0.0e+00 1204.1 736 83.8
ClCG06G002280 Citrullus lanatus HOM05D002391 ORTHO05D004870 0.0e+00 1202.6 736 83.8
Cfa003734 Carpinus fangiana HOM05D002391 ORTHO05D004870 0.0e+00 1201.0 732 83.1
CANSAT56G4076 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1199.9 724 84.7
Haze_15735 Corylus avellana HOM05D002391 ORTHO05D004870 0.0e+00 1199.5 732 82.8
Manes.01G239800 Manihot esculenta HOM05D002391 ORTHO05D004870 0.0e+00 1198.7 727 84.0
CiPaw.01G082500 Carya illinoinensis HOM05D002391 ORTHO05D004870 0.0e+00 1196.4 731 83.0
Sed0000252 Sechium edule HOM05D002391 ORTHO05D004870 0.0e+00 1196.4 736 83.6
COL.COLO4_31148 Corchorus olitorius HOM05D002391 ORTHO05D004870 0.0e+00 1193.7 728 83.7
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 0.0e+00 1191.8 727 83.9
Duzib235G0384 Durio zibethinus HOM05D002391 ORTHO05D004870 0.0e+00 1190.3 730 83.0
arahy.Tifrunner.gnm1.ann1.E8X9SV Arachis hypogaea HOM05D002391 ORTHO05D004870 0.0e+00 1188.7 735 82.4
arahy.Tifrunner.gnm1.ann1.SI3K9E Arachis hypogaea HOM05D002391 ORTHO05D004870 0.0e+00 1187.9 735 82.6
Potri.002G179600 Populus trichocarpa HOM05D002391 ORTHO05D004870 0.0e+00 1186.0 734 83.1
TWI14G1409 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 0.0e+00 1183.3 727 83.5
QL08p047248 Quercus lobata HOM05D002391 ORTHO05D004870 0.0e+00 1181.8 737 82.1
Ciclev10018998m.g Citrus clementina HOM05D002391 ORTHO05D004870 0.0e+00 1179.9 730 82.1
Sabra02G0134300 Salix brachista HOM05D002391 ORTHO05D004870 0.0e+00 1179.1 732 82.7
Lalb_Chr18g0044711 Lupinus albus HOM05D002391 ORTHO05D004870 0.0e+00 1176.0 729 82.2
TPR.G4730 Trifolium pratense HOM05D002391 ORTHO05D004870 0.0e+00 1176.0 731 81.7
Psat0s3525g0040 Pisum sativum HOM05D002391 ORTHO05D004870 0.0e+00 1171.8 738 81.4
Ca_09546_v3 Cicer arietinum L. HOM05D002391 ORTHO05D004870 0.0e+00 1171.4 736 81.2
TAR629G2316 Trochodendron aralioides HOM05D002391 ORTHO05D004870 0.0e+00 1171.0 728 81.6
Gorai.005G122300 Gossypium raimondii HOM05D002391 ORTHO05D004870 0.0e+00 1168.7 730 81.9
Atru.chr5.768 Acer truncatum HOM05D002391 ORTHO05D004870 0.0e+00 1166.8 727 81.2
Medtr7g118220 Medicago truncatula HOM05D002391 ORTHO05D004870 0.0e+00 1164.8 736 80.7
Gorai.010G141700 Gossypium raimondii HOM05D002391 ORTHO05D004870 0.0e+00 1161.7 730 80.8
Gohir.A02G090600 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1161.4 730 81.4
A03p31630 Brassica napus HOM05D002391 ORTHO05D004870 0.0e+00 1161.0 731 79.5
Actinidia08007 Actinidia chinensis HOM05D002391 ORTHO05D004870 0.0e+00 1160.2 730 80.1
Gohir.D06G121400 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1160.2 730 80.7
BraA03t12339Z Brassica rapa HOM05D002391 ORTHO05D004870 0.0e+00 1159.8 731 79.3
Nn2g14439 Nelumbo nucifera HOM05D002391 ORTHO05D004870 0.0e+00 1158.7 728 79.9
Phvul.009G254600 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 0.0e+00 1158.3 729 80.8
Glyma.03G261100 Glycine max HOM05D002391 ORTHO05D004870 0.0e+00 1156.7 729 80.8
C03p38630 Brassica napus HOM05D002391 ORTHO05D004870 0.0e+00 1156.4 731 79.1
BolC3t16136H Brassica oleracea HOM05D002391 ORTHO05D004870 0.0e+00 1156.4 731 79.1
Lj5g0026855 Lotus japonicus HOM05D002391 ORTHO05D004870 0.0e+00 1156.0 729 80.9
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 0.0e+00 1154.4 731 78.9
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 0.0e+00 1154.4 729 80.4
Thecc.06G056400 Theobroma cacao HOM05D002391 ORTHO05D004870 0.0e+00 1152.9 730 81.2
Thhalv10028369m.g Eutrema salsugineum HOM05D002391 ORTHO05D004870 0.0e+00 1152.5 731 79.1
Sp6g01350 Schrenkiella parvula HOM05D002391 ORTHO05D004870 0.0e+00 1151.7 731 79.1
Hma1.2p1_0074F.1_g038740 Hydrangea macrophylla HOM05D002391 ORTHO05D004870 0.0e+00 1150.2 733 79.4
Eucgr.B02196 Eucalyptus grandis HOM05D002391 ORTHO05D004870 0.0e+00 1149.0 729 81.3
Phvul.009G257900 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 0.0e+00 1149.0 729 80.1
Glyma.19G260100 Glycine max HOM05D002391 ORTHO05D004870 0.0e+00 1147.5 729 80.2
VMungo1309G0406 Vigna mungo HOM05D002391 ORTHO05D004870 0.0e+00 1147.5 729 79.7
AL6G52005 Arabidopsis lyrata HOM05D002391 ORTHO05D004870 0.0e+00 1145.2 731 78.5
CARHR250280 Cardamine hirsuta HOM05D002391 ORTHO05D004870 0.0e+00 1141.3 730 78.5
PGR031G3302 Punica granatum HOM05D002391 ORTHO05D004870 0.0e+00 1141.3 729 80.7
Aqoxy5G01515 Aquilegia oxysepala HOM05D002391 ORTHO05D004870 0.0e+00 1139.8 727 80.1
THA.LOC104815894 Tarenaya hassleriana HOM05D002391 ORTHO05D004870 0.0e+00 1138.6 731 78.0
Carub.0006s3580 Capsella rubella HOM05D002391 ORTHO05D004870 0.0e+00 1137.5 731 78.1
vmacro13188 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 0.0e+00 1135.9 729 78.9
AT4G01395 Arabidopsis thaliana HOM05D002391 ORTHO05D004870 0.0e+00 1133.6 731 78.0
Dinv31611 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1130.2 728 78.4
BcaC01g06822 Brassica carinata HOM05D002391 ORTHO05D004870 0.0e+00 1123.6 706 79.2
Hund24710 Selenicereus undatus HOM05D002391 ORTHO05D004870 0.0e+00 1119.8 738 77.5
Migut.B01922 Erythranthe guttata HOM05D002391 ORTHO05D004870 0.0e+00 1116.3 728 77.9
Lsat_1_v5_gn_4_41841 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1106.3 727 77.2
Dinv32645 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1104.0 705 79.0
MSTRG.17383 Avicennia marina HOM05D002391 ORTHO05D004870 0.0e+00 1102.8 728 76.1
DCAR_032252 Daucus carota HOM05D002391 ORTHO05D004870 0.0e+00 1102.4 736 76.0
Gohir.D02G107800 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1102.0 730 78.1
CAN.G1209.27 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1097.4 733 76.5
Lsat_1_v5_gn_3_17681 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1097.4 727 76.5
PSO017G7365 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1096.3 729 76.1
SalBow3G2598 Salvia bowleyana HOM05D002391 ORTHO05D004870 0.0e+00 1095.9 753 74.6
SalBow3G4592 Salvia bowleyana HOM05D002391 ORTHO05D004870 0.0e+00 1095.9 753 74.6
Peaxi162Scf00028g00124 Petunia axillaris HOM05D002391 ORTHO05D004870 0.0e+00 1094.0 729 77.1
PSO170G3053 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1093.6 729 76.0
CAN.G585.49 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1091.3 733 76.1
SGA_v2.0_scaffold12G06269 Striga asiatica HOM05D002391 ORTHO05D004870 0.0e+00 1090.5 728 75.4
HanXRQChr16g0520851 Helianthus annuus HOM05D002391 ORTHO05D004870 0.0e+00 1090.1 727 76.1
Sopen07g029360 Solanum pennellii HOM05D002391 ORTHO05D004870 0.0e+00 1090.1 733 76.0
PSO339G3919 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1089.7 729 75.7
Solyc07g056010.3 Solanum lycopersicum HOM05D002391 ORTHO05D004870 0.0e+00 1087.8 733 75.9
PGSC0003DMG401031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 0.0e+00 1086.2 729 76.0
Ah.08g211620 Amaranthus hybridus HOM05D002391 ORTHO05D004870 0.0e+00 1081.6 735 75.4
Nitab4.5_0003682g0020 Nicotiana tabacum HOM05D002391 ORTHO05D004870 6.0e-311 1070.5 714 76.5
CDE11G0036 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 4.2e-309 1064.3 732 72.4
MBI12_g09288_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 9.3e-309 1063.1 730 75.3
Lalb_Chr15g0076531 Lupinus albus HOM05D002391 ORTHO05D004870 4.6e-308 1060.8 729 74.8
Sc20g0005510 Simmondsia chinensis HOM05D002391 ORTHO05D004870 1.8e-307 1058.9 732 73.2
ATR0697G195 Amborella trichopoda HOM05D002391 ORTHO05D004870 1.1e-306 1056.2 728 72.8
Lj9A607T84 Lonicera japonica HOM05D002391 ORTHO05D004870 7.7e-303 1043.5 674 78.0
HPP92_001559 Vanilla planifolia HOM05D002391 ORTHO05D004870 5.5e-301 1037.3 733 70.7
SEGI_26155 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 1.8e-296 1022.3 740 69.1
SEGI_23282 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 2.5e-293 1011.9 740 68.2
GSVIVG01027440001 Vitis vinifera HOM05D002391 ORTHO05D004870 4.2e-293 1011.1 728 72.1
ECA234G3070 Erigeron canadensis HOM05D002391 ORTHO05D004870 8.8e-291 1003.4 724 70.7
EL10Ac7g16621 Beta vulgaris HOM05D002391 ORTHO05D004870 5.7e-290 1000.7 761 69.1
Nitab4.5_0003729g0040 Nicotiana tabacum HOM05D002391 ORTHO05D004870 1.4e-288 996.1 713 72.8
AUR62042494 Chenopodium quinoa HOM05D002391 ORTHO05D004870 8.0e-284 980.3 667 74.1
unitig_899.g15596 Utricularia gibba HOM05D002391 ORTHO05D004870 4.8e-281 971.1 697 71.3
Cc06_g20470 Coffea canephora HOM05D002391 ORTHO05D004870 7.0e-280 967.2 731 69.2
AUR62040015 Chenopodium quinoa HOM05D002391 ORTHO05D004870 1.7e-278 962.6 665 72.8
ECA234G2472 Erigeron canadensis HOM05D002391 ORTHO05D004870 1.3e-273 946.4 727 66.7
MD07G1159800 Malus domestica HOM05D002391 ORTHO05D004870 5.5e-269 931.0 524 92.4
Oeu007915.2 Olea europaea HOM05D002391 ORTHO05D004870 1.1e-264 916.8 729 67.2
Mapoly0151s0016 Marchantia polymorpha HOM05D002391 ORTHO05D004870 3.7e-257 891.7 730 61.4
Pp3c17_20140 Physcomitrium patens HOM05D002391 ORTHO05D004870 1.1e-248 863.6 737 60.0
SMO364G0412 Selaginella moellendorffii HOM05D002391 ORTHO05D004870 3.9e-246 855.1 731 59.9
Gohir.A06G116700 Gossypium hirsutum HOM05D002391 ORTHO05D004870 3.7e-241 838.6 562 76.7
BcaB05g23972 Brassica carinata HOM05D002391 ORTHO05D004870 1.1e-240 837.0 732 62.2
Manes.05G016350 Manihot esculenta HOM05D002391 ORTHO05D004870 7.1e-240 834.3 730 65.5
unitig_21.g20038 Utricularia gibba HOM05D002391 ORTHO05D004870 1.6e-223 780.0 643 63.0
RcHm_v2.0_Chr1g0334511 Rosa chinensis HOM05D002391 ORTHO05D004870 2.7e-223 779.2 434 91.7
CBR_g6290 Chara braunii HOM05D002391 ORTHO05D004870 2.6e-210 736.1 867 47.6
Rhsim07G0007000 Rhododendron simsii HOM05D002391 ORTHO05D004870 2.9e-209 732.6 551 69.0
TAR636G0053 Trochodendron aralioides HOM05D002391 ORTHO05D004870 2.4e-187 659.8 386 86.5
PSO302G0149 Papaver somniferum HOM05D002391 ORTHO05D004870 2.6e-178 629.8 420 75.5
MD07G1159700 Malus domestica HOM05D002391 ORTHO05D004870 1.3e-172 610.9 330 93.9
A03p50140 Brassica napus HOM05D002391 ORTHO05D004870 1.4e-163 580.9 395 74.9
Os02g0456000 Oryza sativa ssp. japonica HOM05D002391 ORTHO05D004870 2.9e-161 573.2 525 58.3
AagrBONN_evm.TU.Sc2ySwM_344.5215 Anthoceros agrestis HOM05D002391 ORTHO05D004870 7.2e-160 568.5 537 55.3
Carub.0003s2971 Capsella rubella HOM05D002391 ORTHO05D004870 6.1e-159 565.5 762 45.5
Zm00001eb402340 Zea mays HOM05D002391 ORTHO05D004870 1.5e-152 544.3 528 56.1
CDE02G1610 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 2.5e-144 516.9 732 42.9
Zm00001eb005370 Zea mays HOM05D002391 ORTHO05D004870 2.3e-142 510.4 494 55.9
CAN.G732.5 Capsicum annuum HOM05D002391 ORTHO05D004870 1.2e-141 508.1 360 72.2
vmacro23330 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 1.3e-132 478.0 328 75.6
PRCOL_00002903 Prasinoderma coloniale HOM05D002391 ORTHO05D004870 1.5e-128 464.5 740 37.6
Cre06.g287250 Chlamydomonas reinhardtii HOM05D002391 ORTHO05D004870 3.7e-124 449.9 835 34.4
TAR636G3264 Trochodendron aralioides HOM05D002391 ORTHO05D004870 9.2e-123 445.3 304 75.3
RcHm_v2.0_Chr1g0334501 Rosa chinensis HOM05D002391 ORTHO05D004870 3.1e-118 430.3 273 82.1
vmacro13197 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 6.4e-116 422.5 497 52.1
BraA03t14107Z Brassica rapa HOM05D002391 ORTHO05D004870 2.1e-114 417.5 276 77.2
A05p28430 Brassica napus HOM05D002391 ORTHO05D004870 1.9e-112 411.0 272 77.9
BraA05t21723Z Brassica rapa HOM05D002391 ORTHO05D004870 7.3e-112 409.1 272 77.6
DCAR_022118 Daucus carota HOM05D002391 ORTHO05D004870 6.4e-108 396.0 311 65.9
Cpa.g.sc193.14 Carica papaya HOM05D002391 ORTHO05D004870 5.6e-104 382.9 210 89.5
A08p28600 Brassica napus HOM05D002391 ORTHO05D004870 3.2e-99 367.1 239 78.2
MBI12_g48127_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 2.7e-98 364.0 393 55.0
BraA02t04916Z Brassica rapa HOM05D002391 ORTHO05D004870 7.9e-98 362.5 236 78.4
BraA02t08770Z Brassica rapa HOM05D002391 ORTHO05D004870 7.9e-98 362.5 236 78.4
A07p33310 Brassica napus HOM05D002391 ORTHO05D004870 1.2e-90 338.6 215 80.9
CAN.G732.6 Capsicum annuum HOM05D002391 ORTHO05D004870 1.6e-87 328.2 190 85.3
PGSC0003DMG402031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 1.1e-86 325.5 183 86.9
FvH4_4g00571 Fragaria vesca HOM05D002391 ORTHO05D004870 2.0e-56 224.9 149 80.5
FvH4_5g29942 Fragaria vesca HOM05D002391 ORTHO05D017667 3.5e-53 214.2 217 59.0
Dinv08357 Davidia involucrata HOM05D002391 ORTHO05D004870 2.6e-48 198.0 187 56.7
HanXRQChr05g0132281 Helianthus annuus HOM05D002391 ORTHO05D004870 4.4e-48 197.2 123 77.2
C02p38430 Brassica napus HOM05D002391 ORTHO05D017667 1.7e-47 195.3 147 65.3
Actinidia33035 Actinidia chinensis HOM05D002391 ORTHO05D004870 1.8e-46 191.8 120 83.3
BolC2t09861H Brassica oleracea HOM05D002391 ORTHO05D017667 5.2e-41 173.7 127 66.9
BcaC03g16083 Brassica carinata HOM05D002391 ORTHO05D017667 1.0e-33 149.4 107 66.4
BcaC01g02750 Brassica carinata HOM05D002391 ORTHO05D004870 3.4e-32 144.4 143 61.5
Cfa025151 Carpinus fangiana HOM05D002391 ORTHO05D004870 7.0e-30 136.7 622 23.2
ECA246G0062 Erigeron canadensis HOM05D002391 ORTHO05D004870 1.6e-29 135.6 96 69.8
MBI12_g48128_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 8.6e-28 129.8 78 85.9
QL11p025959 Quercus lobata HOM05D002391 ORTHO05D004870 2.1e-26 125.2 263 39.2
FAN18G2005 Fragaria x ananassa HOM05D002391 ORTHO05D017667 1.4e-22 112.5 71 80.3
C03p60940 Brassica napus HOM05D002391 ORTHO05D004870 7.8e-21 106.7 81 72.8
BolC3t18356H Brassica oleracea HOM05D002391 ORTHO05D004870 7.8e-21 106.7 81 72.8
QL08p036835 Quercus lobata HOM05D000041 ORTHO05D000061 1.3e-20 105.9 77 72.7
TPR.G25208 Trifolium pratense HOM05D002391 ORTHO05D004870 3.3e-19 101.3 74 70.3
QL06p008100 Quercus lobata HOM05D000161 ORTHO05D000111 6.2e-18 97.1 71 71.8
TPR.G22870 Trifolium pratense HOM05D002391 ORTHO05D011575 4.4e-16 90.9 86 55.8
FAN19G0487 Fragaria x ananassa HOM05D002391 ORTHO05D017667 4.6e-13 80.9 54 74.1
TPR.G9012 Trifolium pratense HOM05D002391 ORTHO05D004870 4.6e-13 80.9 57 70.2
TPR.G19723 Trifolium pratense HOM05D002391 ORTHO05D004870 1.0e-12 79.7 57 70.2
C09p52400 Brassica napus HOM05D000073 ORTHO05D017582 2.0e-08 65.5 52 61.5
BolC1t04175H Brassica oleracea HOM05D000073 ORTHO05D017582 2.0e-08 65.5 52 61.5
BolC9t58109H Brassica oleracea HOM05D000073 ORTHO05D017582 2.0e-08 65.5 52 61.5
C09p10850 Brassica napus HOM05D000073 ORTHO05D017582 5.8e-08 63.9 52 59.6
FvH4_5g30911 Fragaria vesca HOM05D002391 ORTHO05D017667 5.8e-08 63.9 44 75.0


User provided reference genes

Program Settings