Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G196100 Prunus persica HOM05D013717 ORTHO05D009918 8.1e-83 310.5 167 100.0
FAN03G0231 Fragaria x ananassa HOM05D013717 ORTHO05D009918 1.1e-26 124.0 168 55.4
FAN06G2608 Fragaria x ananassa HOM05D013717 ORTHO05D009918 2.4e-26 122.9 168 55.4
FAN10G3359 Fragaria x ananassa HOM05D013717 ORTHO05D009918 9.1e-26 120.9 168 53.6
FAN10G3789 Fragaria x ananassa HOM05D013717 ORTHO05D009918 3.4e-25 119.0 168 53.6
RcHm_v2.0_Chr1g0360901 Rosa chinensis HOM05D013717 ORTHO05D009918 7.7e-25 117.9 169 55.0
FAN01G0488 Fragaria x ananassa HOM05D013717 ORTHO05D009918 3.2e-23 112.5 168 50.0
Cfa004661 Carpinus fangiana HOM05D008433 ORTHO05D009918 1.0e-21 107.5 187 42.8
CANSAT56G3323 Cannabis sativa HOM05D013717 ORTHO05D009918 1.6e-17 93.6 168 43.5
CiPaw.01G081400 Carya illinoinensis HOM05D008433 ORTHO05D009918 1.5e-15 87.0 169 42.6
TWI14G1180 Tripterygium wilfordii HOM05D008433 ORTHO05D009918 3.6e-14 82.4 166 42.2
CANSAT56G2967 Cannabis sativa HOM05D013717 ORTHO05D009918 4.0e-13 79.0 166 37.3
Rhsim01G0179000 Rhododendron simsii HOM05D008433 ORTHO05D009918 2.8e-11 72.8 200 33.5
Sed0019953 Sechium edule HOM05D029570 ORTHO05D009918 3.7e-11 72.4 173 35.8
AUR62004552 Chenopodium quinoa HOM05D008433 ORTHO05D009918 4.8e-11 72.0 147 36.1
Cpa.g.sc141.14 Carica papaya HOM05D008433 ORTHO05D009918 6.3e-11 71.6 162 37.0
AUR62022666 Chenopodium quinoa HOM05D008433 ORTHO05D009918 6.3e-11 71.6 148 35.8
ClCG06G002750 Citrullus lanatus HOM05D029570 ORTHO05D009918 6.3e-11 71.6 188 35.1
CsaV3_6G008920 Cucumis sativus L. HOM05D029570 ORTHO05D009918 8.2e-11 71.2 180 36.7
A04p34600 Brassica napus HOM05D008433 ORTHO05D009918 1.8e-10 70.1 169 33.7
BraA04t18918Z Brassica rapa HOM05D008433 ORTHO05D009918 1.8e-10 70.1 169 33.7
Manes.05G017500 Manihot esculenta HOM05D008433 ORTHO05D009918 4.1e-10 68.9 171 35.7
Duzib138G0947 Durio zibethinus HOM05D008433 ORTHO05D009918 5.3e-10 68.6 83 53.0
Thhalv10001667m.g Eutrema salsugineum HOM05D008433 ORTHO05D009918 5.3e-10 68.6 143 37.8
AL4G46200 Arabidopsis lyrata HOM05D008433 ORTHO05D009918 7.0e-10 68.2 149 34.2
AT2G46735 Arabidopsis thaliana HOM05D008433 ORTHO05D009918 7.0e-10 68.2 153 35.9
TPR.G22611 Trifolium pratense HOM05D008433 ORTHO05D009918 7.0e-10 68.2 150 36.0
CARHR142080 Cardamine hirsuta HOM05D008433 ORTHO05D009918 3.5e-09 65.9 161 31.7
Hma1.2p1_1697F.1_g298100 Hydrangea macrophylla HOM05D008433 ORTHO05D009918 5.9e-09 65.1 156 31.4
BcaB06g29468 Brassica carinata HOM05D008433 ORTHO05D009918 7.7e-09 64.7 142 35.9
BcaC02g07007 Brassica carinata HOM05D008433 ORTHO05D009918 7.7e-09 64.7 130 33.8
BcaC02g07009 Brassica carinata HOM05D008433 ORTHO05D009918 7.7e-09 64.7 142 35.9
C04p72390 Brassica napus HOM05D008433 ORTHO05D009918 7.7e-09 64.7 147 33.3
BolC4t28725H Brassica oleracea HOM05D008433 ORTHO05D009918 7.7e-09 64.7 147 33.3
Ah.05g179030 Amaranthus hybridus HOM05D008433 ORTHO05D009918 1.3e-08 63.9 174 33.3
Ciclev10023317m.g Citrus clementina HOM05D008433 ORTHO05D009918 1.3e-08 63.9 173 32.9
Nn1g00412 Nelumbo nucifera HOM05D033573 ORTHO05D009918 1.3e-08 63.9 172 30.2
Thecc.01G334700 Theobroma cacao HOM05D008433 ORTHO05D009918 2.2e-08 63.2 113 41.6
TAR629G1417 Trochodendron aralioides HOM05D008433 ORTHO05D009918 2.2e-08 63.2 136 31.6
Oeu046652.1 Olea europaea HOM05D008433 ORTHO05D009918 2.9e-08 62.8 164 35.4
Phvul.009G257200 Phaseolus vulgaris HOM05D008433 ORTHO05D009918 2.9e-08 62.8 155 33.5
Potri.002G178100 Populus trichocarpa HOM05D008433 ORTHO05D009918 3.8e-08 62.4 170 34.1
Oeu015062.1 Olea europaea HOM05D008433 ORTHO05D009918 6.5e-08 61.6 136 32.4
CDE06G1173 Ceratophyllum demersum HOM05D051512 ORTHO05D009918 8.5e-08 61.2 163 32.5
CSS0049417 Camellia sinensis var. sinensis HOM05D008433 ORTHO05D009918 1.9e-07 60.1 166 34.3
Sabra02G0135500 Salix brachista HOM05D008433 ORTHO05D009918 1.9e-07 60.1 177 34.5
MELO3C022252.2 Cucumis melo HOM05D029570 ORTHO05D009918 2.5e-07 59.7 173 34.7
MBI12_g42093_MAGBIO Magnolia biondii HOM05D008433 ORTHO05D009918 3.2e-07 59.3 122 35.2
Actinidia28092 Actinidia chinensis HOM05D013717 ORTHO05D009918 4.2e-07 58.9 125 41.6
BolC4t21776H Brassica oleracea HOM05D000145 ORTHO05D013968 4.2e-07 58.9 159 29.6
Aa31LG1G28120 Aethionema arabicum HOM05D008433 ORTHO05D009918 7.2e-07 58.2 114 38.6
A05p01070 Brassica napus HOM05D000145 ORTHO05D013968 1.2e-06 57.4 159 27.7
BraA05t19107Z Brassica rapa HOM05D000145 ORTHO05D013968 1.2e-06 57.4 159 27.7
Psat3g000840 Pisum sativum HOM05D008433 ORTHO05D009918 2.7e-06 56.2 154 35.7
Nitab4.5_0003094g0050 Nicotiana tabacum HOM05D018587 ORTHO05D009918 4.7e-06 55.5 90 45.6


User provided reference genes

Program Settings