Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G195800 Prunus persica HOM05D007943 ORTHO05D010047 6.9e-62 240.4 113 100.0
MD07G1157400 Malus domestica HOM05D007943 ORTHO05D010047 7.2e-43 177.2 117 76.1
RcHm_v2.0_Chr1g0360861 Rosa chinensis HOM05D007943 ORTHO05D010047 1.2e-40 169.9 118 72.9
FvH4_7g17420 Fragaria vesca HOM05D007943 ORTHO05D010047 2.6e-40 168.7 119 73.9
FAN06G1823 Fragaria x ananassa HOM05D007943 ORTHO05D010047 7.5e-40 167.2 116 74.1
FAN10G1708 Fragaria x ananassa HOM05D007943 ORTHO05D010047 9.8e-40 166.8 119 72.3
FAN10G0207 Fragaria x ananassa HOM05D007943 ORTHO05D010047 1.8e-38 162.5 119 72.3
FAN03G2903 Fragaria x ananassa HOM05D007943 ORTHO05D010047 3.1e-38 161.8 116 72.4
FAN01G2944 Fragaria x ananassa HOM05D007943 ORTHO05D010047 5.4e-38 161.0 119 71.4
MD01G1087200 Malus domestica HOM05D007943 ORTHO05D010047 4.0e-33 144.8 81 79.0
CiPaw.01G081100 Carya illinoinensis HOM05D007943 ORTHO05D010047 3.3e-27 125.2 99 58.6
Duzib133G1419 Durio zibethinus HOM05D007943 ORTHO05D010047 1.6e-26 122.9 85 63.5
Thecc.01G335100 Theobroma cacao HOM05D007943 ORTHO05D010047 1.2e-24 116.7 70 70.0
Ciclev10022962m.g Citrus clementina HOM05D007943 ORTHO05D010047 1.3e-23 113.2 90 61.1
Atru.chr5.749 Acer truncatum HOM05D007943 ORTHO05D010047 1.1e-22 110.2 97 51.5
Gohir.D07G139100 Gossypium hirsutum HOM05D007943 ORTHO05D010047 1.1e-22 110.2 85 56.5
Gohir.D11G104700 Gossypium hirsutum HOM05D007943 ORTHO05D010047 1.1e-22 110.2 85 58.8
Gorai.001G151200 Gossypium raimondii HOM05D007943 ORTHO05D010047 1.1e-22 110.2 85 56.5
Potri.014G104100 Populus trichocarpa HOM05D007943 ORTHO05D010047 2.4e-22 109.0 95 56.8
Gohir.A07G134500 Gossypium hirsutum HOM05D007943 ORTHO05D010047 4.1e-22 108.2 85 56.5
Gorai.007G112000 Gossypium raimondii HOM05D007943 ORTHO05D010047 4.1e-22 108.2 85 57.6
QL08p046777 Quercus lobata HOM05D007943 ORTHO05D010047 4.1e-22 108.2 85 56.5
Gohir.A11G100000 Gossypium hirsutum HOM05D007943 ORTHO05D010047 5.4e-22 107.8 61 73.8
GSVIVG01027420001 Vitis vinifera HOM05D007943 ORTHO05D010047 4.6e-21 104.8 81 59.3
Haze_15717 Corylus avellana HOM05D007943 ORTHO05D010047 1.0e-20 103.6 102 50.0
TAR629G3284 Trochodendron aralioides HOM05D007943 ORTHO05D010047 3.9e-20 101.7 78 57.7
Cfa003750 Carpinus fangiana HOM05D007943 ORTHO05D010047 8.6e-20 100.5 84 56.0
Sabra02G0135900 Salix brachista HOM05D007943 ORTHO05D010047 8.6e-20 100.5 90 50.0
Oeu042966.1 Olea europaea HOM05D007943 ORTHO05D010047 2.5e-19 99.0 80 56.2
Potri.002G177700 Populus trichocarpa HOM05D007943 ORTHO05D010047 4.3e-19 98.2 95 48.4
COL.COLO4_06217 Corchorus olitorius HOM05D007943 ORTHO05D010047 9.5e-19 97.1 85 51.8
Lalb_Chr10g0100821 Lupinus albus HOM05D007943 ORTHO05D010047 3.6e-18 95.1 85 50.6
Medtr8g024630 Medicago truncatula HOM05D007943 ORTHO05D010047 6.2e-18 94.4 99 42.4
Glyma.16G020300 Glycine max HOM05D007943 ORTHO05D010047 8.0e-18 94.0 84 50.0
Glyma.07G051200 Glycine max HOM05D007943 ORTHO05D010047 1.1e-17 93.6 90 50.0
Manes.05G017800 Manihot esculenta HOM05D007943 ORTHO05D010047 1.8e-17 92.8 87 50.6
TPR.G25267 Trifolium pratense HOM05D007943 ORTHO05D010047 2.3e-17 92.4 95 45.3
CSS0046577 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 5.2e-17 91.3 100 48.0
Manes.01G241300 Manihot esculenta HOM05D007943 ORTHO05D010047 2.6e-16 89.0 76 50.0
FAN06G4370 Fragaria x ananassa HOM05D007943 ORTHO05D010047 3.4e-16 88.6 57 77.2
Nn3g18838 Nelumbo nucifera HOM05D007943 ORTHO05D010047 4.4e-16 88.2 84 48.8
CSS0001750 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 5.8e-16 87.8 81 50.6
Glyma.19G259000 Glycine max HOM05D007943 ORTHO05D010047 9.8e-16 87.0 83 48.2
Phvul.006G116500 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 2.2e-15 85.9 81 46.9
Hund16743 Selenicereus undatus HOM05D007943 ORTHO05D010047 2.9e-15 85.5 78 50.0
Psat4g217240 Pisum sativum HOM05D007943 ORTHO05D010047 4.9e-15 84.7 94 43.6
Sc23g0001870 Simmondsia chinensis HOM05D007943 ORTHO05D010047 6.4e-15 84.3 73 53.4
TPR.G4732 Trifolium pratense HOM05D007943 ORTHO05D010047 8.3e-15 84.0 90 45.6
arahy.Tifrunner.gnm1.ann1.FJCJ23 Arachis hypogaea HOM05D007943 ORTHO05D010047 1.1e-14 83.6 100 41.0
Lj3g0013373 Lotus japonicus HOM05D007943 ORTHO05D010047 1.1e-14 83.6 93 39.8
Lalb_Chr02g0157681 Lupinus albus HOM05D007943 ORTHO05D010047 3.2e-14 82.0 48 70.8
Glyma.03G260100 Glycine max HOM05D007943 ORTHO05D010047 2.7e-13 79.0 85 44.7
Phvul.010G118200 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 2.7e-13 79.0 68 52.9
Aqoxy7G00012 Aquilegia oxysepala HOM05D007943 ORTHO05D010047 7.8e-13 77.4 59 54.2
Carub.0001s0107 Capsella rubella HOM05D007943 ORTHO05D010047 1.7e-12 76.3 66 47.0
CsaV3_3G007690 Cucumis sativus L. HOM05D007943 ORTHO05D010047 1.7e-12 76.3 68 50.0
DCAR_006654 Daucus carota HOM05D007943 ORTHO05D010047 1.7e-12 76.3 74 44.6
AUR62004549 Chenopodium quinoa HOM05D007943 ORTHO05D010047 2.3e-12 75.9 55 56.4
MELO3C005988.2 Cucumis melo HOM05D007943 ORTHO05D010047 3.9e-12 75.1 65 50.8
TAR375G0647 Trochodendron aralioides HOM05D007943 ORTHO05D010047 3.9e-12 75.1 74 51.4
AL1G11360 Arabidopsis lyrata HOM05D007943 ORTHO05D010047 3.3e-11 72.0 54 51.9
Sed0006019 Sechium edule HOM05D007943 ORTHO05D010047 5.6e-11 71.2 90 43.3
BolC8t52866H Brassica oleracea HOM05D007943 ORTHO05D010047 9.5e-11 70.5 81 39.5
HPP92_015077 Vanilla planifolia HOM05D000968 ORTHO05D001687 2.8e-10 68.9 74 43.2
CsaV3_3G007710 Cucumis sativus L. HOM05D007943 ORTHO05D010047 3.6e-10 68.6 96 36.5
Rhsim01G0178600 Rhododendron simsii HOM05D007943 ORTHO05D010047 8.1e-10 67.4 88 44.3
A09p68930 Brassica napus HOM05D007943 ORTHO05D010047 1.1e-09 67.0 59 50.8
Solyc10g009260.1 Solanum lycopersicum HOM05D007943 ORTHO05D010047 4.0e-09 65.1 66 42.4
Os03g0126900 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 2.0e-08 62.8 47 51.1
ClCG05G000500 Citrullus lanatus HOM05D007943 ORTHO05D010047 2.6e-08 62.4 66 42.4
Sed0008180 Sechium edule HOM05D007943 ORTHO05D010047 2.6e-08 62.4 53 45.3
Zm00001eb073340 Zea mays HOM05D007943 ORTHO05D010047 3.4e-08 62.0 51 45.1
Os04g0577375 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 4.9e-07 58.2 48 43.8
Os03g0315200 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 1.4e-06 56.6 45 42.2
HPP92_022240 Vanilla planifolia HOM05D007943 ORTHO05D010047 1.4e-06 56.6 49 44.9
Os08g0113900 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 4.1e-06 55.1 45 44.4


User provided reference genes

Program Settings