Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G195400 Prunus persica HOM05D005894 ORTHO05D007461 1.3e-166 589.7 307 100.0
MD07G1156900 Malus domestica HOM05D005894 ORTHO05D007461 1.8e-133 479.6 300 80.7
FAN10G2153 Fragaria x ananassa HOM05D005894 ORTHO05D007461 3.7e-118 428.7 303 69.6
FAN06G1719 Fragaria x ananassa HOM05D005894 ORTHO05D007461 5.4e-117 424.9 303 71.0
FAN03G0327 Fragaria x ananassa HOM05D005894 ORTHO05D007461 7.1e-117 424.5 303 70.6
FAN10G4192 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.2e-116 423.7 303 70.6
CiPaw.01G080700 Carya illinoinensis HOM05D005894 ORTHO05D007461 4.6e-116 421.8 308 67.2
Haze_15704 Corylus avellana HOM05D005894 ORTHO05D007461 1.1e-114 417.2 300 67.3
Cfa003752 Carpinus fangiana HOM05D005894 ORTHO05D007461 2.5e-114 416.0 305 67.2
Haze_15713 Corylus avellana HOM05D005894 ORTHO05D007461 7.3e-114 414.5 300 67.0
Potri.002G177500 Populus trichocarpa HOM05D005894 ORTHO05D007461 1.3e-110 403.7 297 65.3
TAR375G0623 Trochodendron aralioides HOM05D005894 ORTHO05D007461 2.4e-109 399.4 318 62.6
QL08p046715 Quercus lobata HOM05D005894 ORTHO05D007461 7.8e-108 394.4 288 66.0
Hma1.2p1_0309F.1_g120580 Hydrangea macrophylla HOM05D005894 ORTHO05D007461 1.7e-107 393.3 305 64.3
Sabra02G0136100 Salix brachista HOM05D005894 ORTHO05D007461 6.6e-107 391.3 290 64.1
TWI14G1398 Tripterygium wilfordii HOM05D005894 ORTHO05D007461 6.6e-107 391.3 305 63.6
Manes.01G241500 Manihot esculenta HOM05D005894 ORTHO05D007461 8.6e-107 391.0 290 63.8
THA.LOC104801356 Tarenaya hassleriana HOM05D005894 ORTHO05D007461 1.5e-106 390.2 280 66.1
Nn3g18834 Nelumbo nucifera HOM05D005894 ORTHO05D007461 5.6e-106 388.3 307 61.6
Actinidia20275 Actinidia chinensis HOM05D005894 ORTHO05D007461 2.1e-105 386.3 292 66.1
Atru.chr5.746 Acer truncatum HOM05D005894 ORTHO05D007461 6.2e-105 384.8 289 68.2
Duzib133G0870 Durio zibethinus HOM05D005894 ORTHO05D007461 3.1e-104 382.5 311 63.0
vmacro04295 Vaccinium macrocarpon HOM05D005894 ORTHO05D007461 4.0e-104 382.1 302 63.2
QL08p046701 Quercus lobata HOM05D005894 ORTHO05D007461 6.8e-104 381.3 278 67.3
HanXRQChr17g0563091 Helianthus annuus HOM05D005894 ORTHO05D007461 3.4e-103 379.0 289 64.0
Rhsim07G0001000 Rhododendron simsii HOM05D005894 ORTHO05D007461 4.4e-103 378.6 301 61.5
Sed0016091 Sechium edule HOM05D005894 ORTHO05D007461 4.4e-103 378.6 284 63.0
Ciclev10023878m.g Citrus clementina HOM05D005894 ORTHO05D007461 7.6e-103 377.9 300 65.0
ClCG06G002760 Citrullus lanatus HOM05D005894 ORTHO05D007461 9.9e-103 377.5 301 59.8
ECA234G4535 Erigeron canadensis HOM05D005894 ORTHO05D007461 3.8e-102 375.6 290 62.1
arahy.Tifrunner.gnm1.ann1.IJN1JI Arachis hypogaea HOM05D005894 ORTHO05D007461 6.4e-102 374.8 308 59.1
AL1G11320 Arabidopsis lyrata HOM05D005894 ORTHO05D007461 1.1e-101 374.0 306 58.8
arahy.Tifrunner.gnm1.ann1.UMNZ42 Arachis hypogaea HOM05D005894 ORTHO05D007461 1.1e-101 374.0 308 58.8
arahy.Tifrunner.gnm1.ann1.YB3WUJ Arachis hypogaea HOM05D005894 ORTHO05D007461 1.1e-101 374.0 308 58.8
VMungo0331G1846 Vigna mungo HOM05D005894 ORTHO05D007461 1.1e-101 374.0 295 61.7
Thecc.01G335500 Theobroma cacao HOM05D005894 ORTHO05D007461 3.2e-101 372.5 308 60.4
AT1G01180 Arabidopsis thaliana HOM05D005894 ORTHO05D007461 4.2e-101 372.1 303 58.7
CARHR001290 Cardamine hirsuta HOM05D005894 ORTHO05D007461 7.1e-101 371.3 304 59.2
Lsat_1_v5_gn_4_31980 Lactuca sativa HOM05D005894 ORTHO05D007461 7.1e-101 371.3 305 61.3
Sed0008841 Sechium edule HOM05D005894 ORTHO05D007461 7.1e-101 371.3 284 66.5
Thhalv10008287m.g Eutrema salsugineum HOM05D005894 ORTHO05D007461 1.2e-100 370.5 282 60.6
COL.COLO4_06220 Corchorus olitorius HOM05D005894 ORTHO05D007461 1.6e-100 370.2 311 59.8
HanXRQChr16g0524851 Helianthus annuus HOM05D005894 ORTHO05D007461 1.6e-100 370.2 274 63.9
arahy.Tifrunner.gnm1.ann1.FN9JYV Arachis hypogaea HOM05D005894 ORTHO05D007461 2.1e-100 369.8 308 58.1
Potri.014G103800 Populus trichocarpa HOM05D005894 ORTHO05D007461 2.1e-100 369.8 245 70.6
Sp1g01110 Schrenkiella parvula HOM05D005894 ORTHO05D007461 2.7e-100 369.4 306 58.5
PSO063G1123 Papaver somniferum HOM05D005894 ORTHO05D007461 4.6e-100 368.6 324 63.0
A10p00720 Brassica napus HOM05D005894 ORTHO05D007461 7.8e-100 367.9 302 57.9
BraA10t42349Z Brassica rapa HOM05D005894 ORTHO05D007461 7.8e-100 367.9 302 58.3
Cpa.g.sc141.18 Carica papaya HOM05D005894 ORTHO05D007461 1.0e-99 367.5 326 55.5
Lalb_Chr17g0342931 Lupinus albus HOM05D005894 ORTHO05D007461 1.7e-99 366.7 310 57.4
Carub.0001s0103 Capsella rubella HOM05D005894 ORTHO05D007461 3.0e-99 365.9 288 59.0
Gohir.A07G134700 Gossypium hirsutum HOM05D005894 ORTHO05D007461 3.0e-99 365.9 306 59.8
Lj3g0011008 Lotus japonicus HOM05D005894 ORTHO05D007461 3.0e-99 365.9 283 61.1
Aa31LG1G10550 Aethionema arabicum HOM05D005894 ORTHO05D007461 5.1e-99 365.2 281 58.7
Lsat_1_v5_gn_4_31960 Lactuca sativa HOM05D005894 ORTHO05D007461 5.1e-99 365.2 285 61.4
C05p00760 Brassica napus HOM05D005894 ORTHO05D007461 1.9e-98 363.2 238 67.6
BolC5t28860H Brassica oleracea HOM05D005894 ORTHO05D007461 1.9e-98 363.2 238 67.6
MSTRG.20917 Avicennia marina HOM05D005894 ORTHO05D007461 5.6e-98 361.7 295 58.3
Glyma.07G051400 Glycine max HOM05D005894 ORTHO05D007461 5.6e-98 361.7 314 58.0
Gorai.001G151400 Gossypium raimondii HOM05D005894 ORTHO05D007461 5.6e-98 361.7 306 59.2
MBI04_g25320_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 7.3e-98 361.3 290 60.7
BcaB03g13563 Brassica carinata HOM05D005894 ORTHO05D007461 1.6e-97 360.1 306 57.5
Duzib138G0081 Durio zibethinus HOM05D005894 ORTHO05D007461 1.6e-97 360.1 314 57.0
Phvul.010G118000 Phaseolus vulgaris HOM05D005894 ORTHO05D007461 2.8e-97 359.4 296 60.8
Sc01g0002310 Simmondsia chinensis HOM05D005894 ORTHO05D007461 2.8e-97 359.4 286 61.5
Gohir.A12G115600 Gossypium hirsutum HOM05D005894 ORTHO05D007461 3.6e-97 359.0 281 62.3
Medtr8g024680 Medicago truncatula HOM05D005894 ORTHO05D007461 1.1e-96 357.5 293 60.1
Ca_23494_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 1.4e-96 357.1 312 60.3
Ca_29944_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 1.4e-96 357.1 312 60.3
MELO3C022251.2 Cucumis melo HOM05D005894 ORTHO05D007461 6.9e-96 354.8 241 66.4
CsaV3_6G008930 Cucumis sativus L. HOM05D005894 ORTHO05D007461 6.9e-96 354.8 241 65.6
Gohir.D12G119200 Gossypium hirsutum HOM05D005894 ORTHO05D007461 9.0e-96 354.4 281 63.3
Lj2g0016031 Lotus japonicus HOM05D005894 ORTHO05D007461 4.5e-95 352.1 274 62.4
AUR62004546 Chenopodium quinoa HOM05D005894 ORTHO05D007461 5.8e-95 351.7 305 58.0
Psat4g216640 Pisum sativum HOM05D005894 ORTHO05D007461 8.4e-94 347.8 310 55.2
ATR0090G035 Amborella trichopoda HOM05D005894 ORTHO05D007461 5.4e-93 345.1 302 57.6
Oeu042964.1 Olea europaea HOM05D005894 ORTHO05D007461 1.2e-92 344.0 292 57.9
Nitab4.5_0000307g0270 Nicotiana tabacum HOM05D005894 ORTHO05D007461 1.6e-92 343.6 312 54.2
PSO782G1789 Papaver somniferum HOM05D005894 ORTHO05D007461 1.0e-91 340.9 326 60.1
Ah.05g179110 Amaranthus hybridus HOM05D005894 ORTHO05D007461 2.3e-91 339.7 291 57.4
AUR62022660 Chenopodium quinoa HOM05D005894 ORTHO05D007461 5.1e-91 338.6 225 69.8
Dinv32633 Davidia involucrata HOM05D005894 ORTHO05D007461 5.1e-91 338.6 296 58.4
Peaxi162Scf00767g00044 Petunia axillaris HOM05D005894 ORTHO05D007461 8.7e-91 337.8 311 53.1
TPR.G14294 Trifolium pratense HOM05D005894 ORTHO05D007461 1.5e-90 337.0 307 53.1
PGSC0003DMG400018381 Solanum tuberosum HOM05D005894 ORTHO05D007461 1.9e-90 336.7 300 56.7
Solyc01g096380.1 Solanum lycopersicum HOM05D005894 ORTHO05D007461 3.3e-90 335.9 297 56.2
Haze_15705 Corylus avellana HOM05D005894 ORTHO05D007461 4.3e-90 335.5 258 64.0
MSTRG.20916 Avicennia marina HOM05D005894 ORTHO05D007461 5.6e-90 335.1 299 55.2
Cc02_g39840 Coffea canephora HOM05D005894 ORTHO05D007461 7.4e-90 334.7 310 55.8
Sopen00g010520 Solanum pennellii HOM05D005894 ORTHO05D007461 4.0e-88 328.9 300 55.7
Gorai.008G129200 Gossypium raimondii HOM05D005894 ORTHO05D007461 1.5e-87 327.0 280 61.8
CAN.G1045.39 Capsicum annuum HOM05D005894 ORTHO05D007461 5.8e-87 325.1 310 51.9
Ah.07g207870 Amaranthus hybridus HOM05D005894 ORTHO05D007461 1.7e-86 323.6 292 53.8
SEGI_06461 Sequoiadendron giganteum HOM05D005894 ORTHO05D007461 2.2e-86 323.2 235 62.6
MSTRG.26254 Avicennia marina HOM05D005894 ORTHO05D007461 1.6e-84 317.0 281 56.2
MBI04_g22377_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 2.1e-84 316.6 280 57.5
Lj9P603T40 Lonicera japonica HOM05D005894 ORTHO05D007461 6.0e-84 315.1 212 67.9
FAN01G2899 Fragaria x ananassa HOM05D005894 ORTHO05D007461 8.7e-83 311.2 208 69.2
Sc01g0000420 Simmondsia chinensis HOM05D005894 ORTHO05D007461 7.4e-82 308.1 309 50.5
Migut.B01913 Erythranthe guttata HOM05D005894 ORTHO05D007461 1.1e-80 304.3 302 52.6
Sc01g0002320 Simmondsia chinensis HOM05D005894 ORTHO05D007461 1.5e-79 300.4 309 47.6
TPR.G25260 Trifolium pratense HOM05D005894 ORTHO05D007461 1.6e-76 290.4 192 69.8
SGA_v2.0_scaffold5G03060 Striga asiatica HOM05D005894 ORTHO05D007461 1.3e-75 287.3 303 49.2
AagrBONN_evm.TU.Sc2ySwM_228.2264 Anthoceros agrestis HOM05D005894 ORTHO05D007461 2.5e-74 283.1 240 55.0
Zm00001eb102910 Zea mays HOM05D005894 ORTHO05D007461 2.5e-74 283.1 239 57.3
Zm00001eb102940 Zea mays HOM05D005894 ORTHO05D007461 2.5e-74 283.1 239 57.3
Os09g0518900 Oryza sativa ssp. japonica HOM05D005894 ORTHO05D007461 4.3e-74 282.3 241 57.7
SalBow6G4791 Salvia bowleyana HOM05D005894 ORTHO05D007461 1.3e-73 280.8 283 50.5
Gohir.D07G139300 Gossypium hirsutum HOM05D005894 ORTHO05D007461 2.1e-73 280.0 255 56.5
Pp3c23_20890 Physcomitrium patens HOM05D005894 ORTHO05D007461 4.8e-73 278.9 241 54.4
Pp3c20_5150 Physcomitrium patens HOM05D005894 ORTHO05D007461 1.8e-72 276.9 240 52.9
Mapoly0044s0088 Marchantia polymorpha HOM05D005894 ORTHO05D007461 3.1e-72 276.2 243 51.9
unitig_52.g17564 Utricularia gibba HOM05D005894 ORTHO05D007461 3.1e-72 276.2 228 54.8
SalBow3G0292 Salvia bowleyana HOM05D005894 ORTHO05D007461 4.5e-71 272.3 213 56.8
SalBow3G4666 Salvia bowleyana HOM05D005894 ORTHO05D007461 4.5e-71 272.3 213 56.8
EL10Ac5g10561 Beta vulgaris HOM05D005894 ORTHO05D007461 2.2e-70 270.0 237 53.6
unitig_744.g24593 Utricularia gibba HOM05D005894 ORTHO05D007461 3.7e-65 252.7 229 53.7
unitig_744.g24591 Utricularia gibba HOM05D005894 ORTHO05D007461 2.4e-64 250.0 229 53.3
Oeu022737.1 Olea europaea HOM05D005894 ORTHO05D007461 9.4e-61 238.0 154 71.4
unitig_21.g20086 Utricularia gibba HOM05D005894 ORTHO05D007461 1.6e-60 237.3 298 43.6
RcHm_v2.0_Chr1g0360831 Rosa chinensis HOM05D005894 ORTHO05D007461 5.7e-58 228.8 190 63.7
FAN06G4171 Fragaria x ananassa HOM05D005894 ORTHO05D007461 3.4e-55 219.5 134 76.9
unitig_744.g24581 Utricularia gibba HOM05D005894 ORTHO05D007461 9.4e-53 211.5 247 44.9
EL10Ac1g00202 Beta vulgaris HOM05D005894 ORTHO05D007461 1.1e-48 198.0 137 70.8
RcHm_v2.0_Chr1g0360821 Rosa chinensis HOM05D005894 ORTHO05D007461 1.3e-46 191.0 105 82.9
Sc17g0001460 Simmondsia chinensis HOM05D005894 ORTHO05D387453 3.8e-46 189.5 281 38.1
SMO367G0414 Selaginella moellendorffii HOM05D005894 ORTHO05D007461 1.6e-44 184.1 137 59.9
unitig_21.g20129 Utricularia gibba HOM05D005894 ORTHO05D007461 3.0e-27 126.7 103 53.4
Sc22g0003370 Simmondsia chinensis HOM05D005894 ORTHO05D007461 3.8e-22 109.8 167 37.7
unitig_21.g20130 Utricularia gibba HOM05D005894 ORTHO05D007461 4.3e-13 79.7 72 51.4
unitig_52.g17562 Utricularia gibba HOM05D005894 ORTHO05D420364 1.0e-06 58.5 47 51.1


User provided reference genes

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