Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 2.6e-164 582.0 303 100.0
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 3.1e-109 399.1 316 74.1
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 3.5e-108 395.6 315 70.2
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 7.5e-95 351.3 307 66.4
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 6.1e-89 331.6 308 64.3
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 6.1e-89 331.6 308 64.3
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.0e-88 330.9 308 64.3
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 2.2e-86 323.2 308 63.0
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.0e-83 314.3 309 61.2
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 1.3e-83 313.9 307 61.6
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 7.0e-77 291.6 303 57.1
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 4.7e-73 278.9 306 58.5
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 1.9e-69 266.9 303 52.8
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 2.7e-60 236.5 309 51.1
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 6.9e-56 221.9 316 49.4
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 7.6e-55 218.4 311 45.0
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 1.4e-53 214.2 300 48.3
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 9.3e-53 211.5 299 48.5
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 1.2e-52 211.1 298 46.0
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 1.6e-52 210.7 294 46.3
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 1.6e-52 210.7 303 47.5
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 1.6e-52 210.7 302 48.0
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 3.5e-52 209.5 301 45.2
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 3.5e-52 209.5 301 45.2
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 6.6e-51 205.3 298 44.6
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 1.9e-50 203.8 301 45.2
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 4.3e-50 202.6 302 45.7
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 4.3e-50 202.6 308 44.8
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 6.2e-49 198.7 297 42.1
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 8.1e-49 198.4 307 43.3
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 8.1e-49 198.4 306 47.7
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 2.4e-48 196.8 318 40.3
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 4.0e-48 196.1 302 47.0
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 6.9e-48 195.3 299 41.5
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 7.6e-47 191.8 315 45.1
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 1.7e-46 190.7 319 42.3
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 2.9e-46 189.9 315 48.6
ClCG06G002790 Citrullus lanatus HOM05D007199 ORTHO05D007257 5.4e-45 185.7 290 44.1
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 5.4e-45 185.7 317 45.1
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 9.3e-45 184.9 322 43.5
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 3.5e-44 183.0 300 44.7
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 4.6e-44 182.6 289 43.9
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 4.6e-44 182.6 281 42.7
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 6.0e-44 182.2 327 41.6
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 2.3e-43 180.3 278 47.5
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 3.0e-43 179.9 300 44.0
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 5.1e-43 179.1 296 44.3
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 9.6e-42 174.9 321 43.9
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 1.3e-41 174.5 309 37.9
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 8.1e-41 171.8 275 47.6
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 2.6e-39 166.8 295 40.3
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 3.4e-39 166.4 310 41.3
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 1.6e-36 157.5 300 43.0
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 8.2e-33 145.2 322 38.8
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 3.1e-32 143.3 307 36.2
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 3.1e-32 143.3 306 38.2
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.1e-29 134.8 275 38.5
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 1.9e-29 134.0 294 36.1
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 1.9e-29 134.0 275 38.5
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 2.1e-28 130.6 279 39.8
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 2.7e-28 130.2 286 36.0
Lj9C602T4 Lonicera japonica HOM05D007199 ORTHO05D007257 7.9e-28 128.6 249 36.9
CSS0044672 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 1.8e-27 127.5 258 39.1
Gohir.A12G114200 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.8e-27 127.5 284 34.9
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 6.7e-27 125.6 297 35.0
Rhsim01G0176600 Rhododendron simsii HOM05D007199 ORTHO05D007257 1.5e-26 124.4 303 36.3
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 2.5e-26 123.6 298 37.9
Peaxi162Scf00087g00199 Petunia axillaris HOM05D007199 ORTHO05D007257 3.3e-26 123.2 302 33.8
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 4.3e-26 122.9 303 35.0
arahy.Tifrunner.gnm1.ann1.GEK5Z0 Arachis hypogaea HOM05D007199 ORTHO05D007257 2.8e-25 120.2 256 35.2
arahy.Tifrunner.gnm1.ann1.A7IBVM Arachis hypogaea HOM05D007199 ORTHO05D007257 4.8e-25 119.4 286 32.5
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 8.2e-25 118.6 308 34.1
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 1.4e-24 117.9 310 34.8
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 2.4e-24 117.1 314 32.8
arahy.Tifrunner.gnm1.ann1.WJU08E Arachis hypogaea HOM05D007199 ORTHO05D007257 3.1e-24 116.7 256 39.1
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 5.0e-22 109.4 314 32.8
MSTRG.17369 Avicennia marina HOM05D007199 ORTHO05D007257 8.5e-22 108.6 266 38.7
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 1.1e-21 108.2 311 33.8
Oeu022158.1 Olea europaea HOM05D007199 ORTHO05D007257 1.9e-21 107.5 234 38.5
A05p01150 Brassica napus HOM05D012720 ORTHO05D007257 3.2e-21 106.7 327 31.5
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 7.2e-21 105.5 330 31.8
BraA05t19115Z Brassica rapa HOM05D012720 ORTHO05D007257 1.6e-20 104.4 326 31.0
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 2.7e-20 103.6 311 34.1
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 3.6e-20 103.2 287 33.1
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 4.6e-20 102.8 306 33.7
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 6.1e-20 102.4 317 33.1
PGSC0003DMG400000126 Solanum tuberosum HOM05D007199 ORTHO05D007257 3.9e-19 99.8 311 32.2
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 5.1e-19 99.4 337 31.8
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 8.8e-19 98.6 280 35.0
CDE09G0027 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 1.5e-18 97.8 314 30.9
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 3.3e-18 96.7 300 31.3
arahy.Tifrunner.gnm1.ann1.P1IKWH Arachis hypogaea HOM05D007199 ORTHO05D007257 5.7e-18 95.9 289 32.2
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 1.7e-17 94.4 279 32.3
CDE11G0583 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 2.8e-17 93.6 325 29.5
MBI12_g13712_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 3.7e-17 93.2 315 32.1
Sabra14G0075600 Salix brachista HOM05D007199 ORTHO05D007257 4.8e-17 92.8 302 31.5
vmacro12588 Vaccinium macrocarpon HOM05D007199 ORTHO05D007257 8.2e-17 92.0 230 33.9
Nitab4.5_0000917g0050 Nicotiana tabacum HOM05D007199 ORTHO05D007257 6.9e-16 89.0 197 32.5
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 1.5e-15 87.8 281 31.0
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 1.5e-15 87.8 278 33.1
C04p01310 Brassica napus HOM05D012720 ORTHO05D007257 7.7e-15 85.5 323 30.3
COL.COLO4_06259 Corchorus olitorius HOM05D007199 ORTHO05D007257 1.3e-14 84.7 138 44.2
Lsat_1_v5_gn_4_32721 Lactuca sativa HOM05D007199 ORTHO05D007257 2.9e-14 83.6 268 30.2
AUR62008640 Chenopodium quinoa HOM05D021513 ORTHO05D007257 3.8e-14 83.2 301 30.6
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 4.2e-13 79.7 309 29.4
Cc02_g39760 Coffea canephora HOM05D007199 ORTHO05D007257 4.2e-13 79.7 369 31.7
DCAR_006984 Daucus carota HOM05D007199 ORTHO05D007257 5.5e-13 79.3 314 29.3
Actinidia25657 Actinidia chinensis HOM05D007199 ORTHO05D007257 7.2e-13 79.0 188 33.5
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 7.2e-13 79.0 297 31.6
BcaC02g07047 Brassica carinata HOM05D012720 ORTHO05D007257 1.2e-12 78.2 270 30.7
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 2.1e-12 77.4 239 33.1
Sc23g0001940 Simmondsia chinensis HOM05D007199 ORTHO05D007257 2.1e-12 77.4 304 28.3
ATR0620G133 Amborella trichopoda HOM05D007199 ORTHO05D007257 3.9e-11 73.2 298 28.5
SalBow5G5634 Salvia bowleyana HOM05D007199 ORTHO05D007257 6.7e-11 72.4 265 28.7
EL10Ac7g17504 Beta vulgaris HOM05D021513 ORTHO05D007257 2.6e-10 70.5 277 30.7
Hund16734 Selenicereus undatus HOM05D007199 ORTHO05D007257 5.7e-10 69.3 265 28.3
Ah.15g093270 Amaranthus hybridus HOM05D021513 ORTHO05D007257 6.3e-09 65.9 251 27.9
Gorai.008G127500 Gossypium raimondii HOM05D007199 ORTHO05D007257 2.4e-08 63.9 124 36.3
HanXRQChr16g0524641 Helianthus annuus HOM05D007199 ORTHO05D007257 2.4e-08 63.9 281 28.5
CDE02G0206 Ceratophyllum demersum HOM05D056078 ORTHO05D007257 5.3e-08 62.8 277 25.6
Sed0003454 Sechium edule HOM05D000634 ORTHO05D028992 9.1e-08 62.0 228 28.1
MBI04_g33415_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 1.2e-07 61.6 207 31.9
PGR042G0368 Punica granatum HOM05D007199 ORTHO05D007257 1.0e-06 58.5 347 27.1
Nitab4.5_0000307g0150 Nicotiana tabacum HOM05D007199 ORTHO05D007257 2.9e-06 57.0 80 47.5
SGA_v2.0_scaffold581G53044 Striga asiatica HOM05D006631 ORTHO05D008359 8.5e-06 55.5 261 29.1


User provided reference genes

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