Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 0.0e+00 1534.2 758 100.0
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1364.7 758 88.4
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1329.7 758 85.9
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1318.5 758 85.5
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1283.5 747 84.9
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1281.2 756 84.1
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1266.5 748 84.0
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1254.2 748 83.6
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1252.7 748 83.4
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1251.5 748 83.3
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1232.2 758 79.7
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1229.5 754 80.1
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1229.5 758 79.8
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1224.5 759 80.2
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1220.7 761 79.2
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1214.9 758 79.0
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 0.0e+00 1214.1 759 79.4
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1214.1 758 78.8
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1209.1 756 78.7
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1198.0 758 78.6
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1185.2 756 76.9
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1182.5 757 76.4
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1181.4 754 76.8
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1178.7 753 77.0
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1177.9 758 76.3
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1173.3 753 77.2
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1171.4 755 74.8
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1168.3 755 75.1
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1167.1 755 75.1
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1163.3 756 75.1
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1162.9 758 76.3
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1161.0 755 75.0
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1159.4 755 76.3
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1158.3 755 74.8
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1157.9 757 75.4
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1157.9 755 75.1
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1157.1 753 75.8
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1155.6 759 75.1
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1150.2 754 75.5
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1142.9 754 74.3
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1140.2 754 74.0
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1139.4 756 73.7
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1138.3 757 74.0
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1137.1 755 73.0
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1132.9 755 73.2
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1129.0 754 74.7
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1127.9 756 72.9
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1124.8 787 71.9
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1124.4 758 73.2
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1124.0 757 74.6
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1120.5 759 74.6
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1120.1 762 72.4
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1117.4 753 73.6
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1117.4 756 73.9
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1116.3 757 74.1
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1115.9 756 71.8
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1115.1 753 73.7
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1113.2 756 71.6
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1112.8 757 73.8
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1111.3 742 74.8
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1110.5 754 71.9
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1107.8 754 73.5
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1107.4 759 72.3
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1096.6 758 71.5
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1095.1 753 72.4
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1093.2 748 72.2
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1092.4 755 71.5
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1090.5 757 70.3
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1089.7 745 72.5
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1088.9 759 69.8
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1087.4 756 71.4
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1086.6 758 71.1
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1086.2 754 71.5
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1084.7 754 71.6
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1084.3 758 71.5
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1080.1 758 70.7
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 5.2e-312 1074.7 762 69.6
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 1.3e-310 1069.3 759 69.4
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 1.9e-309 1065.4 755 69.4
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 1.9e-309 1065.4 719 73.3
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 8.2e-308 1060.1 754 70.0
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 1.8e-307 1058.9 761 69.4
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 3.1e-307 1058.1 751 70.6
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 2.5e-304 1048.5 759 70.1
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 7.2e-304 1047.0 751 67.6
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 7.9e-303 1043.5 745 70.1
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 1.1e-301 1039.6 756 69.0
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 1.3e-300 1036.2 717 71.8
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 1.7e-300 1035.8 758 69.1
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 2.3e-294 1015.4 757 67.0
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 4.4e-293 1011.1 756 66.4
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 2.6e-285 985.3 757 64.3
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 1.3e-284 983.0 764 66.0
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 1.3e-281 973.0 754 63.4
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 2.2e-281 972.2 755 64.8
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 1.0e-278 963.4 754 62.5
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 6.3e-260 901.0 793 57.8
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 2.3e-233 812.8 713 57.6
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 6.8e-230 801.2 539 74.8
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 1.2e-229 800.4 583 69.5
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 1.8e-198 696.8 755 49.3
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 3.1e-198 696.0 656 56.9
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 3.2e-187 659.4 765 47.3
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 5.7e-184 648.7 750 51.6
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 5.7e-168 595.5 403 74.4
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 1.4e-166 590.9 767 43.3
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 1.8e-129 467.6 999 32.3
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 8.1e-114 415.6 295 68.5
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 2.2e-74 284.6 187 73.3
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 9.4e-70 269.2 163 80.4
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 2.5e-14 85.1 65 60.0
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 2.6e-11 75.1 526 21.5
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 5.8e-11 73.9 43 74.4
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 5.8e-11 73.9 43 74.4
SEGI_36326 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 9.9e-11 73.2 89 44.9
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.4e-09 68.6 40 75.0
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 1.3e-07 62.8 59 50.8
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 5.1e-07 60.8 86 37.2
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 7.3e-06 57.0 266 23.3


User provided reference genes

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