Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G191800 Prunus persica HOM05D014299 ORTHO05D017012 1.8e-47 192.2 94 100.0
MD01G1084100 Malus domestica HOM05D014299 ORTHO05D017012 5.5e-28 127.5 94 74.5
FAN10G2971 Fragaria x ananassa HOM05D014299 ORTHO05D017012 4.3e-17 91.3 83 61.4
FAN10G3583 Fragaria x ananassa HOM05D014299 ORTHO05D017012 4.3e-17 91.3 83 61.4
FAN01G2858 Fragaria x ananassa HOM05D014299 ORTHO05D017012 7.4e-17 90.5 87 62.1
FvH4_7g16950 Fragaria vesca HOM05D014299 ORTHO05D017012 9.7e-17 90.1 83 62.7
FAN06G0585 Fragaria x ananassa HOM05D014299 ORTHO05D017012 2.2e-16 89.0 83 60.2
FAN06G3413 Fragaria x ananassa HOM05D014299 ORTHO05D017012 4.8e-16 87.8 83 59.0
FAN03G1568 Fragaria x ananassa HOM05D014299 ORTHO05D017012 8.2e-16 87.0 80 61.2
RcHm_v2.0_Chr1g0360201 Rosa chinensis HOM05D014299 ORTHO05D017012 2.6e-14 82.0 85 58.8
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.0e-10 70.1 63 65.1
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 1.0e-10 70.1 68 60.3
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 6.7e-10 67.4 68 58.8
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 2.5e-09 65.5 89 48.3
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 3.3e-09 65.1 52 65.4
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 7.4e-09 63.9 87 49.4
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.3e-08 63.2 52 63.5
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 1.3e-08 63.2 64 59.4
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.7e-08 62.8 62 59.7
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.7e-08 62.8 62 59.7
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 1.7e-08 62.8 64 57.8
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 2.8e-08 62.0 63 58.7
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 2.8e-08 62.0 68 55.9
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 4.8e-08 61.2 60 55.0
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 6.3e-08 60.8 61 59.0
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 1.1e-07 60.1 70 57.1
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 1.1e-07 60.1 49 71.4
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.4e-07 59.7 72 54.2
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 1.8e-07 59.3 64 56.2
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 3.1e-07 58.5 47 66.0
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 4.1e-07 58.2 66 51.5
Lalb_Chr23g0271671 Lupinus albus HOM05D003086 ORTHO05D003347 4.1e-07 58.2 66 48.5
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 5.3e-07 57.8 36 77.8
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 5.3e-07 57.8 84 47.6
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 6.9e-07 57.4 69 50.7
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 6.9e-07 57.4 73 49.3
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 6.9e-07 57.4 57 61.4
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 6.9e-07 57.4 80 45.0
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 9.1e-07 57.0 48 60.4
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 9.1e-07 57.0 81 43.2
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 9.1e-07 57.0 49 57.1
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 9.1e-07 57.0 45 66.7
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 9.1e-07 57.0 75 46.7
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 9.1e-07 57.0 49 61.2
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 9.1e-07 57.0 62 56.5
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 1.2e-06 56.6 50 58.0
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 1.2e-06 56.6 53 66.0
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.2e-06 56.6 44 68.2
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 1.5e-06 56.2 67 49.3
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.5e-06 56.2 45 64.4
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 1.5e-06 56.2 50 60.0
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.0e-06 55.8 47 63.8
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 2.0e-06 55.8 68 44.1
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 2.0e-06 55.8 80 45.0
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.0e-06 55.8 61 57.4
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 2.6e-06 55.5 69 49.3
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.6e-06 55.5 87 41.4
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 2.6e-06 55.5 67 55.2
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 2.6e-06 55.5 78 44.9
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 5.9e-06 54.3 62 51.6
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 5.9e-06 54.3 82 41.5
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 5.9e-06 54.3 48 56.2
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 7.7e-06 53.9 47 59.6


User provided reference genes

Program Settings