Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 3.2e-189 664.8 318 100.0
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 4.5e-151 538.1 319 82.4
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 2.4e-144 515.8 320 78.1
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 5.9e-143 511.1 321 77.9
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.9e-142 508.8 321 77.6
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.5e-141 506.5 321 76.9
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.5e-141 505.8 321 76.9
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 5.6e-141 504.6 320 77.8
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.2e-140 503.4 321 76.6
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 6.4e-137 491.1 310 77.1
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 2.0e-135 486.1 315 74.3
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 2.5e-133 479.2 315 73.7
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.4e-131 473.4 303 72.9
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 3.4e-130 468.8 303 72.3
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 3.2e-128 462.2 300 72.7
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 2.0e-127 459.5 319 69.3
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 7.8e-127 457.6 306 72.2
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 1.7e-126 456.4 322 68.9
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 5.0e-126 454.9 305 71.1
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 5.6e-125 451.4 319 68.3
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 5.6e-125 451.4 303 69.0
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 8.9e-123 444.1 303 67.3
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 2.0e-122 443.0 302 69.2
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 5.8e-122 441.4 273 74.7
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 9.9e-122 440.7 301 69.4
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 9.9e-122 440.7 301 69.4
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 3.7e-121 438.7 305 65.6
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 6.4e-121 438.0 320 67.8
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 1.4e-120 436.8 304 67.4
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 2.4e-120 436.0 303 69.6
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 7.1e-120 434.5 303 68.0
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 1.6e-119 433.3 327 66.7
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 2.1e-119 433.0 304 64.8
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 2.7e-119 432.6 303 67.7
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 3.9e-118 428.7 319 67.4
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 1.9e-117 426.4 306 66.0
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 2.5e-117 426.0 303 66.3
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 5.6e-117 424.9 274 72.3
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 9.5e-117 424.1 273 73.3
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 4.7e-116 421.8 284 70.8
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 6.2e-116 421.4 303 66.0
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 2.4e-115 419.5 303 65.3
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 4.0e-115 418.7 307 64.8
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 5.2e-115 418.3 272 71.0
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 2.0e-114 416.4 274 70.4
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 3.4e-114 415.6 304 64.1
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 5.8e-114 414.8 304 64.8
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 9.9e-114 414.1 304 62.5
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 1.7e-113 413.3 273 70.3
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 2.9e-113 412.5 304 62.2
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 3.8e-113 412.1 303 62.0
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 1.4e-112 410.2 303 65.0
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 2.1e-111 406.4 304 61.8
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 4.6e-111 405.2 273 71.1
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 3.0e-110 402.5 270 67.4
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 6.6e-110 401.4 321 58.9
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 6.6e-110 401.4 301 62.5
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 1.9e-109 399.8 270 69.3
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 1.9e-109 399.8 316 60.4
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 4.3e-109 398.7 271 68.3
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 7.3e-109 397.9 282 65.6
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 1.1e-107 394.0 306 61.8
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.8e-107 393.3 293 61.8
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 5.2e-107 391.7 293 61.4
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 4.4e-106 388.7 293 60.8
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 5.8e-106 388.3 316 63.3
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 5.8e-106 388.3 320 59.7
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 7.6e-106 387.9 323 57.9
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 6.4e-105 384.8 295 61.0
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 8.4e-105 384.4 273 64.1
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.1e-104 384.0 301 59.1
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 1.4e-104 383.6 278 65.8
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 1.2e-103 380.6 315 58.7
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.0e-102 377.5 302 57.9
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 1.3e-102 377.1 263 69.6
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 1.3e-102 377.1 324 59.3
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 3.0e-102 375.9 301 59.5
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 2.5e-101 372.9 277 63.5
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 9.6e-101 370.9 321 58.9
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 1.3e-100 370.5 283 62.5
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 1.4e-99 367.1 304 57.2
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 1.3e-97 360.5 284 61.6
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 4.6e-95 352.1 270 63.7
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 2.1e-92 343.2 267 59.9
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 6.9e-91 338.2 328 50.6
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.2e-90 337.4 289 55.4
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 2.7e-87 326.2 326 55.5
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 2.3e-86 323.2 239 66.1
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 5.1e-86 322.0 336 50.3
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 6.2e-84 315.1 213 66.7
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 2.0e-82 310.1 301 51.5
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 4.5e-82 308.9 267 55.4
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 1.0e-81 307.8 229 60.3
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 2.5e-80 303.1 276 53.6
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 1.9e-77 293.5 278 54.3
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 9.7e-77 291.2 304 47.7
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 3.7e-76 289.3 190 73.2
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 3.7e-76 289.3 273 53.5
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 4.1e-75 285.8 189 70.9
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 1.1e-72 277.7 253 53.8
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 1.9e-72 276.9 190 69.5
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 3.6e-71 272.7 178 70.8
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 3.9e-70 269.2 274 49.3
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 6.9e-67 258.5 311 45.3
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 2.0e-66 256.9 287 47.7
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 3.4e-66 256.1 294 44.6
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 3.9e-62 242.7 255 47.8
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.1e-61 241.1 190 60.5
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 2.4e-59 233.4 189 59.8
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 5.3e-59 232.3 190 59.5
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 1.2e-58 231.1 279 44.1
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 6.5e-57 225.3 207 57.5
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 2.5e-56 223.4 186 57.5
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 4.2e-56 222.6 281 42.7
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 2.6e-53 213.4 277 41.2
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 1.1e-51 208.0 192 54.7
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 1.2e-50 204.5 317 36.6
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 2.0e-50 203.8 309 36.9
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 6.5e-49 198.7 126 72.2
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.4e-46 191.0 271 39.9
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 1.8e-46 190.7 117 76.1
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 1.7e-44 184.1 127 63.8
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 1.8e-43 180.6 134 64.2
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 2.4e-43 180.3 119 72.3
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 2.5e-40 170.2 220 42.7
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 5.5e-40 169.1 253 36.8
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 3.6e-39 166.4 119 65.5
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 2.6e-37 160.2 123 63.4
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 5.7e-37 159.1 169 50.9
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 8.3e-36 155.2 112 67.0
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 4.7e-31 139.4 119 54.6
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 1.4e-30 137.9 129 54.3
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 7.5e-29 132.1 99 63.6
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 6.3e-28 129.0 96 64.6
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 2.9e-25 120.2 159 40.9
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 1.2e-21 108.2 64 76.6
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 9.8e-21 105.1 182 36.8
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 1.2e-18 98.2 73 64.4
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 4.6e-18 96.3 76 53.9
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.3e-17 94.7 63 60.3
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 8.6e-17 92.0 63 71.4
unitig_747.g21341 Utricularia gibba HOM05D000590 ORTHO05D006825 8.9e-14 82.0 49 73.5
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 1.3e-12 78.2 59 50.8
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 3.7e-12 76.6 74 50.0
MD07G1149100 Malus domestica HOM05D000590 ORTHO05D006825 1.2e-10 71.6 43 74.4
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 1.0e-09 68.6 103 36.9
PSO210G5020 Papaver somniferum HOM05D001459 ORTHO05D003498 1.1e-08 65.1 52 57.7
SHI13293 Sapria himalayana HOM05D000590 ORTHO05D006825 3.1e-06 57.0 32 68.8
Lj1g0015259 Lotus japonicus HOM05D000590 ORTHO05D006825 8.9e-06 55.5 37 62.2


User provided reference genes

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