Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G185600 Prunus persica HOM05D001772 ORTHO05D008903 4.1e-267 924.1 449 100.0
MD07G1147600 Malus domestica HOM05D001772 ORTHO05D008903 5.9e-213 744.2 428 84.8
RcHm_v2.0_Chr1g0359211 Rosa chinensis HOM05D001772 ORTHO05D008903 9.1e-206 720.3 434 80.4
MD01G1078600 Malus domestica HOM05D001772 ORTHO05D008903 8.5e-204 713.8 429 81.6
FvH4_7g16200 Fragaria vesca HOM05D001772 ORTHO05D008903 3.1e-198 695.3 433 78.3
Cfa003819 Carpinus fangiana HOM05D001772 ORTHO05D008903 1.3e-191 673.3 429 76.7
FAN01G1646 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.3e-191 673.3 432 76.6
QL04p013773 Quercus lobata HOM05D001772 ORTHO05D008903 3.7e-191 671.8 429 76.7
FAN03G0169 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.8e-190 669.5 432 76.6
GSVIVG01027076001 Vitis vinifera HOM05D001772 ORTHO05D008903 9.1e-190 667.2 437 74.6
FAN06G2365 Fragaria x ananassa HOM05D001772 ORTHO05D008903 5.9e-189 664.5 427 76.1
FAN06G4998 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.9e-187 659.4 423 76.4
CANSAT56G1679 Cannabis sativa HOM05D001772 ORTHO05D008903 1.2e-184 650.2 442 72.2
FAN10G2954 Fragaria x ananassa HOM05D001772 ORTHO05D008903 4.9e-183 644.8 391 78.5
Dinv18731 Davidia involucrata HOM05D001772 ORTHO05D008903 7.0e-182 641.0 440 72.3
CANSAT56G1036 Cannabis sativa HOM05D001772 ORTHO05D008903 1.7e-180 636.3 430 72.6
CSS0012714 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 2.8e-178 629.0 436 70.9
Manes.05G024600 Manihot esculenta HOM05D001772 ORTHO05D008903 6.8e-177 624.4 435 71.5
Ciclev10020231m.g Citrus clementina HOM05D001772 ORTHO05D008903 7.5e-176 620.9 435 71.0
TAR375G0197 Trochodendron aralioides HOM05D001772 ORTHO05D008903 1.7e-175 619.8 438 70.1
Haze_15635 Corylus avellana HOM05D001772 ORTHO05D008903 4.1e-174 615.1 450 68.9
TPR.G8988 Trifolium pratense HOM05D001772 ORTHO05D008903 2.5e-171 605.9 437 68.0
Thecc.01G344900 Theobroma cacao HOM05D001772 ORTHO05D008903 5.6e-171 604.7 444 67.8
Potri.014G096700 Populus trichocarpa HOM05D001772 ORTHO05D008903 1.6e-170 603.2 435 69.9
TWI59G0809 Tripterygium wilfordii HOM05D001772 ORTHO05D008903 1.1e-169 600.5 436 69.0
vmacro13174 Vaccinium macrocarpon HOM05D001772 ORTHO05D008903 4.4e-168 595.1 437 68.0
Medtr5g025480 Medicago truncatula HOM05D001772 ORTHO05D008903 1.9e-166 589.7 437 67.5
Gohir.A12G111500 Gossypium hirsutum HOM05D001772 ORTHO05D008903 2.4e-166 589.3 437 66.8
Ca_25036_v3 Cicer arietinum L. HOM05D001772 ORTHO05D008903 3.2e-166 589.0 435 66.0
Gohir.D12G114800 Gossypium hirsutum HOM05D001772 ORTHO05D008903 4.1e-166 588.6 437 66.6
Lj1g0009750 Lotus japonicus HOM05D001772 ORTHO05D008903 5.4e-166 588.2 424 66.7
Atru.chr5.644 Acer truncatum HOM05D001772 ORTHO05D008903 9.2e-166 587.4 439 68.1
Aqoxy7G00133 Aquilegia oxysepala HOM05D001772 ORTHO05D008903 2.1e-165 586.3 437 65.4
Sabra14G0070800 Salix brachista HOM05D001772 ORTHO05D008903 3.5e-165 585.5 425 69.2
Gorai.008G124300 Gossypium raimondii HOM05D001772 ORTHO05D008903 6.0e-165 584.7 437 65.9
Duzib138G1524 Durio zibethinus HOM05D001772 ORTHO05D008903 3.9e-164 582.0 428 66.6
Eucgr.E00067 Eucalyptus grandis HOM05D001772 ORTHO05D008903 6.6e-164 581.3 438 65.5
Psat2g145680 Pisum sativum HOM05D001772 ORTHO05D008903 1.5e-163 580.1 435 65.5
VMungo0540G0918 Vigna mungo HOM05D001772 ORTHO05D008903 4.3e-163 578.6 430 66.5
Lalb_Chr04g0261581 Lupinus albus HOM05D001772 ORTHO05D008903 1.6e-162 576.6 422 67.1
AT4G01040 Arabidopsis thaliana HOM05D001772 ORTHO05D008903 3.6e-162 575.5 433 64.2
arahy.Tifrunner.gnm1.ann1.NY4TXX Arachis hypogaea HOM05D001772 ORTHO05D008903 3.6e-162 575.5 447 63.8
Nn3g19051 Nelumbo nucifera HOM05D001772 ORTHO05D008903 1.8e-161 573.2 420 66.7
CARHR249250 Cardamine hirsuta HOM05D001772 ORTHO05D008903 6.8e-161 571.2 436 62.4
COL.COLO4_06307 Corchorus olitorius HOM05D001772 ORTHO05D008903 6.8e-161 571.2 437 66.1
arahy.Tifrunner.gnm1.ann1.HV5NER Arachis hypogaea HOM05D001772 ORTHO05D008903 2.6e-160 569.3 444 63.7
Lsat_1_v5_gn_3_139600 Lactuca sativa HOM05D001772 ORTHO05D008903 7.5e-160 567.8 440 64.8
Rhsim07G0005700 Rhododendron simsii HOM05D001772 ORTHO05D008903 7.5e-160 567.8 442 64.0
Aa31LG5G920 Aethionema arabicum HOM05D001772 ORTHO05D008903 1.3e-159 567.0 437 62.7
PGR042G2345 Punica granatum HOM05D001772 ORTHO05D008903 3.7e-159 565.5 435 63.4
Thhalv10028671m.g Eutrema salsugineum HOM05D001772 ORTHO05D008903 6.4e-159 564.7 406 65.0
Migut.N01555 Erythranthe guttata HOM05D001772 ORTHO05D008903 3.2e-158 562.4 436 63.5
EL10Ac1g00295 Beta vulgaris HOM05D001772 ORTHO05D008903 4.1e-158 562.0 441 61.9
Carub.0006s3610 Capsella rubella HOM05D001772 ORTHO05D008903 5.4e-158 561.6 433 61.9
Sp6g01100 Schrenkiella parvula HOM05D001772 ORTHO05D008903 1.2e-157 560.5 437 60.9
CSS0002891 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 3.5e-157 558.9 401 68.8
Cc02_g39160 Coffea canephora HOM05D001772 ORTHO05D008903 3.9e-156 555.4 440 63.2
THA.LOC104825876 Tarenaya hassleriana HOM05D001772 ORTHO05D008903 1.1e-155 553.9 435 63.0
PSO135G0498 Papaver somniferum HOM05D001772 ORTHO05D008903 2.5e-155 552.7 384 69.3
CAN.G239.5 Capsicum annuum HOM05D001772 ORTHO05D008903 3.3e-155 552.4 437 61.6
AUR62004469 Chenopodium quinoa HOM05D001772 ORTHO05D008903 9.5e-155 550.8 437 62.7
Glyma.03G256800 Glycine max HOM05D001772 ORTHO05D008903 9.5e-155 550.8 420 65.7
ClCG05G000920 Citrullus lanatus HOM05D001772 ORTHO05D008903 2.1e-154 549.7 436 64.4
Sc01g0002840 Simmondsia chinensis HOM05D001772 ORTHO05D008903 6.2e-154 548.1 435 62.8
BcaC01g06839 Brassica carinata HOM05D001772 ORTHO05D008903 1.1e-153 547.4 427 62.1
C03p38820 Brassica napus HOM05D001772 ORTHO05D008903 1.1e-153 547.4 426 62.7
BolC3t16157H Brassica oleracea HOM05D001772 ORTHO05D008903 1.4e-153 547.0 426 62.4
Oeu007903.1 Olea europaea HOM05D001772 ORTHO05D008903 1.8e-153 546.6 438 61.9
AUR62023481 Chenopodium quinoa HOM05D001772 ORTHO05D008903 8.9e-153 544.3 442 61.1
BraA03t12356Z Brassica rapa HOM05D001772 ORTHO05D008903 1.5e-152 543.5 426 61.5
PGSC0003DMG402033880 Solanum tuberosum HOM05D001772 ORTHO05D008903 1.5e-152 543.5 363 68.9
Sopen05g028720 Solanum pennellii HOM05D001772 ORTHO05D008903 4.4e-152 542.0 445 59.1
A03p31810 Brassica napus HOM05D001772 ORTHO05D008903 9.9e-152 540.8 426 61.3
PSO384G4631 Papaver somniferum HOM05D001772 ORTHO05D008903 1.3e-151 540.4 384 68.2
Peaxi162Scf00403g00519 Petunia axillaris HOM05D001772 ORTHO05D008903 6.4e-151 538.1 424 61.6
BcaB01g02345 Brassica carinata HOM05D001772 ORTHO05D008903 1.9e-150 536.6 426 62.0
CsaV3_3G008150 Cucumis sativus L. HOM05D001772 ORTHO05D008903 4.2e-150 535.4 437 63.4
SalBow5G1378 Salvia bowleyana HOM05D001772 ORTHO05D008903 5.4e-150 535.0 464 58.2
MBI06_g46729_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D008903 9.2e-150 534.3 472 57.2
HanXRQChr11g0353031 Helianthus annuus HOM05D001772 ORTHO05D008903 1.7e-148 530.0 432 60.9
Solyc05g050320.4 Solanum lycopersicum HOM05D001772 ORTHO05D008903 3.0e-148 529.3 353 68.6
Ah.05g179760 Amaranthus hybridus HOM05D001772 ORTHO05D008903 1.5e-147 526.9 434 59.4
Sed0004684 Sechium edule HOM05D001772 ORTHO05D008903 1.2e-146 523.9 387 66.1
Phvul.006G111900 Phaseolus vulgaris HOM05D001772 ORTHO05D008903 3.2e-142 509.2 321 75.1
SGA_v2.0_scaffold11G05728 Striga asiatica HOM05D001772 ORTHO05D008903 3.5e-141 505.8 444 58.3
DCAR_005380 Daucus carota HOM05D001772 ORTHO05D008903 4.6e-141 505.4 528 51.9
Hund27212 Selenicereus undatus HOM05D001772 ORTHO05D008903 1.0e-140 504.2 468 54.5
Lj9A595T55 Lonicera japonica HOM05D001772 ORTHO05D008903 5.1e-140 501.9 321 72.6
Nitab4.5_0000258g0130 Nicotiana tabacum HOM05D001772 ORTHO05D008903 3.3e-139 499.2 429 58.3
CDE10G0091 Ceratophyllum demersum HOM05D001772 ORTHO05D008903 4.8e-138 495.4 437 58.6
MELO3C006034.2 Cucumis melo HOM05D001772 ORTHO05D008903 7.6e-136 488.0 436 60.1
Cpa.g.sc273.9 Carica papaya HOM05D001772 ORTHO05D008903 2.4e-134 483.0 349 70.2
Zm00001eb358410 Zea mays HOM05D001772 ORTHO05D008903 2.1e-133 479.9 432 56.0
ECA240G4072 Erigeron canadensis HOM05D001772 ORTHO05D008903 4.8e-130 468.8 348 63.5
HPP92_005515 Vanilla planifolia HOM05D001772 ORTHO05D008903 4.8e-130 468.8 424 56.4
Pp3c22_2040 Physcomitrium patens HOM05D001772 ORTHO05D008903 1.3e-103 380.9 367 49.3
Actinidia10113 Actinidia chinensis HOM05D001772 ORTHO05D008903 1.7e-103 380.6 283 67.5
AL6G52340 Arabidopsis lyrata HOM05D001772 ORTHO05D008903 3.6e-101 372.9 253 68.8
SEGI_01392 Sequoiadendron giganteum HOM05D001772 ORTHO05D008903 3.3e-99 366.3 331 54.1
AagrBONN_evm.TU.Sc2ySwM_344.1652 Anthoceros agrestis HOM05D001772 ORTHO05D008903 2.4e-89 333.6 424 42.2
Mapoly0102s0038 Marchantia polymorpha HOM05D001772 ORTHO05D008903 1.0e-87 328.2 340 47.4
CiPaw.01G074400 Carya illinoinensis HOM05D001772 ORTHO05D008903 2.2e-87 327.0 233 71.2
SMO347G0199 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 1.0e-84 318.2 327 50.2
SMO167G0031 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 1.4e-84 317.8 326 50.0
Nitab4.5_0004506g0060 Nicotiana tabacum HOM05D001772 ORTHO05D008903 3.5e-80 303.1 429 42.0
CBR_g3968 Chara braunii HOM05D001772 ORTHO05D008903 1.3e-71 274.6 403 37.2
Cre03.g200650 Chlamydomonas reinhardtii HOM05D001772 ORTHO05D008903 6.0e-56 222.6 413 33.2
ATR0589G019 Amborella trichopoda HOM05D001772 ORTHO05D008903 4.0e-52 209.9 180 58.3
Os01g0619800 Oryza sativa ssp. japonica HOM05D001772 ORTHO05D008903 6.2e-45 186.0 136 64.7
Nitab4.5_0015177g0010 Nicotiana tabacum HOM05D001772 ORTHO05D000634 1.3e-39 168.3 118 68.6
Zm00001eb297790 Zea mays HOM05D001772 ORTHO05D023027 4.2e-33 146.7 139 53.2
Glyma.19G255000 Glycine max HOM05D001772 ORTHO05D008903 1.8e-15 88.2 59 71.2
Nitab4.5_0015177g0020 Nicotiana tabacum HOM05D001772 ORTHO05D008903 6.2e-13 79.7 51 64.7
Zm00001eb098470 Zea mays HOM05D001772 ORTHO05D008903 1.6e-08 65.1 53 60.4


User provided reference genes

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