Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 1.9e-218 762.3 405 100.0
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 4.5e-172 608.2 405 81.7
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 1.1e-170 603.6 419 79.5
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.6e-156 555.1 433 71.4
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 6.0e-156 554.7 440 70.5
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.8e-153 545.8 448 69.2
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.7e-153 545.0 448 69.2
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 5.8e-151 538.1 450 68.0
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.1e-144 517.3 405 69.4
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 1.1e-144 517.3 405 69.4
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 1.4e-144 516.9 405 69.6
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 5.8e-143 511.5 404 68.6
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 2.4e-141 506.1 410 67.1
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 1.7e-139 500.0 410 68.0
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 4.3e-138 495.4 410 66.3
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 9.6e-138 494.2 410 66.3
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 2.1e-137 493.0 412 66.0
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 2.2e-134 483.0 412 65.5
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 2.9e-134 482.6 411 66.7
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 3.8e-134 482.3 409 65.8
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 6.4e-134 481.5 394 66.5
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 3.2e-133 479.2 410 65.4
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 5.4e-133 478.4 414 64.5
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 2.1e-132 476.5 411 64.7
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 2.3e-131 473.0 402 64.7
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 2.3e-131 473.0 410 64.6
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 1.9e-130 469.9 410 64.6
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 4.3e-130 468.8 406 63.5
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 9.6e-130 467.6 410 64.4
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 4.8e-129 465.3 409 63.8
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 4.8e-129 465.3 372 73.4
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.6e-127 459.5 404 63.9
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 2.6e-127 459.5 407 63.6
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 9.9e-127 457.6 413 62.7
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 1.3e-126 457.2 414 62.8
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 1.7e-126 456.8 414 63.0
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 2.2e-126 456.4 429 61.5
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 1.6e-124 450.3 411 61.8
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 2.1e-124 449.9 415 61.7
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 2.7e-124 449.5 414 61.8
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.7e-124 449.5 407 62.2
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.3e-123 447.2 399 62.4
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 1.3e-123 447.2 418 61.0
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 3.0e-123 446.0 459 59.0
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 1.9e-122 443.4 418 59.3
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 7.4e-122 441.4 390 63.6
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 1.3e-121 440.7 405 60.2
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.3e-121 440.7 412 60.9
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 4.8e-121 438.7 413 60.8
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 1.8e-120 436.8 326 71.5
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.4e-120 436.4 408 61.3
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 3.1e-120 436.0 407 60.0
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 5.3e-120 435.3 411 61.1
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 5.3e-120 435.3 413 59.3
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 2.0e-119 433.3 409 60.4
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.6e-119 433.0 412 60.0
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 3.4e-119 432.6 400 61.2
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 3.4e-119 432.6 411 61.1
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 2.2e-118 429.9 415 58.8
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 6.4e-118 428.3 409 60.4
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 1.1e-117 427.6 418 59.8
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 1.4e-117 427.2 420 57.1
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 1.9e-117 426.8 412 58.5
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 4.2e-117 425.6 354 67.2
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 5.5e-117 425.2 411 60.8
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.2e-116 424.1 370 65.7
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 1.6e-116 423.7 379 65.4
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 7.9e-116 421.4 412 56.8
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 1.3e-115 420.6 410 58.5
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 3.9e-115 419.1 438 56.4
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 8.7e-115 417.9 412 58.7
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 1.5e-114 417.2 415 55.9
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 2.4e-112 409.8 419 58.0
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 6.9e-112 408.3 409 55.5
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 5.8e-111 405.2 410 57.3
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.0e-110 404.4 384 59.1
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 1.1e-109 401.0 294 76.5
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 3.2e-109 399.4 362 61.6
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 2.1e-108 396.7 408 57.4
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 6.0e-108 395.2 383 59.5
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 3.0e-107 392.9 358 62.3
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 2.8e-105 386.3 510 48.4
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 1.2e-103 380.9 381 56.7
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 2.0e-103 380.2 398 57.0
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 5.9e-103 378.6 407 54.8
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 1.7e-102 377.1 406 54.4
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.8e-102 375.9 501 48.1
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 2.5e-101 373.2 407 54.5
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 9.4e-101 371.3 393 57.8
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 9.4e-101 371.3 397 53.7
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 1.2e-100 370.9 405 54.1
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 7.9e-100 368.2 405 53.8
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 3.9e-99 365.9 405 53.3
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 8.8e-99 364.8 403 52.1
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 2.5e-98 363.2 404 52.7
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 4.3e-98 362.5 405 52.3
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 7.4e-98 361.7 405 52.1
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 2.2e-97 360.1 409 52.6
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 5.3e-96 355.5 409 51.3
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 5.3e-96 355.5 408 51.5
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 3.2e-93 346.3 403 49.9
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 9.4e-93 344.7 405 50.9
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 6.1e-92 342.0 430 48.6
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 1.4e-91 340.9 403 50.1
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 5.1e-91 339.0 410 51.7
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.6e-87 326.6 327 58.4
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 4.2e-85 319.3 428 46.5
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 4.4e-82 309.3 367 55.6
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 5.9e-79 298.9 366 50.0
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 5.3e-72 275.8 414 44.0
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.6e-71 274.2 351 49.6
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 2.7e-68 263.5 330 50.6
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 4.4e-66 256.1 310 49.4
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 1.5e-61 241.1 266 55.6
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 4.2e-61 239.6 243 58.4
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 8.0e-60 235.3 318 49.1
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 2.8e-57 226.9 444 39.0
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 2.0e-55 220.7 226 58.4
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 5.4e-40 169.5 428 34.6
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.7e-38 164.5 83 89.2
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 7.1e-32 142.5 359 33.1
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 2.1e-31 141.0 152 52.6
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 2.1e-31 141.0 152 52.6
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 7.8e-31 139.0 162 54.3
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 1.2e-26 125.2 292 32.5
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 1.1e-24 118.6 117 60.7
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 9.2e-24 115.5 130 48.5
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 4.6e-23 113.2 141 51.1
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 2.4e-19 100.9 71 78.9
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 9.0e-19 99.0 98 65.3
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 2.2e-17 94.4 88 61.4
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.9e-17 94.0 144 45.1
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 5.1e-14 83.2 183 36.1
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 4.3e-13 80.1 65 67.7
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 4.8e-12 76.6 40 75.0
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 4.8e-12 76.6 93 49.5
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.2e-07 62.0 41 78.0
MELO3C033909.2 Cucumis melo HOM05D005133 ORTHO05D020525 2.3e-06 57.8 83 49.4
MELO3C031967.2 Cucumis melo HOM05D005133 ORTHO05D165940 8.7e-06 55.8 59 55.9


User provided reference genes

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