Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G173800 Prunus persica HOM05D006343 ORTHO05D005694 7.4e-129 464.2 284 100.0
MD01G1067400 Malus domestica HOM05D006343 ORTHO05D005694 1.3e-59 234.2 312 51.0
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 6.4e-56 221.9 308 50.6
MD07G1133500 Malus domestica HOM05D006343 ORTHO05D005694 1.9e-55 220.3 305 48.2
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 1.1e-52 211.1 296 47.6
CANSAT56G2487 Cannabis sativa HOM05D006343 ORTHO05D005694 1.7e-48 197.2 318 51.9
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 7.9e-46 188.3 311 46.0
CiPaw.01G064000 Carya illinoinensis HOM05D006343 ORTHO05D005694 1.8e-45 187.2 315 49.5
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 2.3e-45 186.8 311 45.0
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 1.6e-43 180.6 312 44.6
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 2.1e-43 180.3 297 44.8
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 3.7e-43 179.5 291 44.0
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 8.1e-43 178.3 310 42.9
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 9.0e-42 174.9 314 41.4
TAR629G3314 Trochodendron aralioides HOM05D006343 ORTHO05D005694 3.2e-39 166.4 297 43.1
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 1.2e-38 164.5 308 40.9
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 6.0e-38 162.2 313 42.8
Oeu055797.1 Olea europaea HOM05D006343 ORTHO05D005694 2.5e-36 156.8 298 40.6
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 1.1e-34 151.4 316 38.9
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 3.1e-34 149.8 285 40.0
QL04p054168 Quercus lobata HOM05D006343 ORTHO05D005694 4.1e-34 149.4 228 43.4
GSVIVG01026998001 Vitis vinifera HOM05D006343 ORTHO05D005694 2.0e-33 147.1 301 38.5
Glyma.16G034200 Glycine max HOM05D006343 ORTHO05D005694 4.5e-33 146.0 331 39.0
FAN03G1311 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.7e-32 144.1 314 36.0
FvH4_7g14870 Fragaria vesca HOM05D006343 ORTHO05D005694 2.2e-32 143.7 307 35.8
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.0e-32 142.5 314 38.9
FAN10G3557 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.5e-32 142.1 318 36.8
Phvul.010G101000 Phaseolus vulgaris HOM05D006343 ORTHO05D005694 6.5e-32 142.1 294 42.5
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.1e-31 141.4 314 38.2
Lalb_Chr17g0339411 Lupinus albus HOM05D006343 ORTHO05D005694 1.1e-31 141.4 316 44.3
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 1.4e-31 141.0 295 39.3
FAN01G0301 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.9e-31 140.6 317 37.5
FAN06G4353 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.2e-31 139.8 308 35.7
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 5.5e-31 139.0 222 42.8
FvH4_7g14980 Fragaria vesca HOM05D006343 ORTHO05D005694 9.3e-31 138.3 316 41.8
FAN06G0921 Fragaria x ananassa HOM05D006343 ORTHO05D005694 9.3e-31 138.3 316 41.8
VMungo0331G0061 Vigna mungo HOM05D006343 ORTHO05D005694 9.3e-31 138.3 295 44.7
FAN06G0140 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.2e-30 137.9 305 35.4
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 2.1e-30 137.1 305 38.7
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 3.6e-30 136.3 309 36.6
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 4.6e-30 136.0 296 36.8
MSTRG.18339 Avicennia marina HOM05D006343 ORTHO05D005694 7.9e-30 135.2 293 36.5
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 1.8e-29 134.0 305 36.7
Gorai.007G101600 Gossypium raimondii HOM05D006343 ORTHO05D005694 1.8e-29 134.0 296 44.6
FAN03G1905 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.9e-29 132.9 307 36.2
Nitab4.5_0001040g0020 Nicotiana tabacum HOM05D006343 ORTHO05D005694 3.9e-29 132.9 322 32.0
Nn1g01591 Nelumbo nucifera HOM05D006343 ORTHO05D005694 1.1e-28 131.3 326 35.3
FAN10G3545 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.5e-28 131.0 356 33.4
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 1.9e-28 130.6 304 39.8
Lsat_1_v5_gn_7_4060 Lactuca sativa HOM05D006343 ORTHO05D005694 2.5e-28 130.2 305 34.1
Lj3g0021957 Lotus japonicus HOM05D006343 ORTHO05D005694 3.3e-28 129.8 329 42.9
Oeu035719.1 Olea europaea HOM05D003054 ORTHO05D003376 4.3e-28 129.4 228 39.9
Oeu035731.1 Olea europaea HOM05D006343 ORTHO05D005694 9.7e-28 128.3 302 33.4
Duzib138G0695 Durio zibethinus HOM05D006343 ORTHO05D005694 1.6e-27 127.5 302 44.4
Cc02_g38320 Coffea canephora HOM05D006343 ORTHO05D005694 4.8e-27 125.9 300 41.3
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 6.3e-27 125.6 320 35.9
Oeu035722.1 Olea europaea HOM05D006343 ORTHO05D005694 8.2e-27 125.2 296 34.1
COL.COLO4_12739 Corchorus olitorius HOM05D006343 ORTHO05D005694 1.1e-26 124.8 303 43.2
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 1.4e-26 124.4 314 39.5
Dinv32502 Davidia involucrata HOM05D006343 ORTHO05D005694 6.9e-26 122.1 239 38.5
Nitab4.5_0001655g0110 Nicotiana tabacum HOM05D006343 ORTHO05D005694 2.6e-25 120.2 328 32.3
Gohir.D11G095300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.3e-24 117.9 314 40.8
Cfa003895 Carpinus fangiana HOM05D006343 ORTHO05D005694 1.1e-23 114.8 301 39.2
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 1.1e-23 114.8 315 32.7
SGA_v2.0_scaffold1G00635 Striga asiatica HOM05D006343 ORTHO05D005694 1.4e-23 114.4 336 33.3
CAN.G650.25 Capsicum annuum HOM05D006343 ORTHO05D005694 2.5e-23 113.6 317 36.0
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 1.2e-22 111.3 312 33.7
Nitab4.5_0003369g0030 Nicotiana tabacum HOM05D006343 ORTHO05D005694 6.7e-21 105.5 303 32.7
TWI23G0998 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 8.8e-21 105.1 305 38.4
Eucgr.I00992 Eucalyptus grandis HOM05D006343 ORTHO05D005694 2.6e-20 103.6 312 33.7
CAN.G650.32 Capsicum annuum HOM05D006343 ORTHO05D005694 9.7e-20 101.7 327 31.5
Sed0018743 Sechium edule HOM05D006343 ORTHO05D005694 1.3e-19 101.3 306 35.9
CAN.G650.35 Capsicum annuum HOM05D006343 ORTHO05D005694 3.7e-19 99.8 323 30.3
FAN10G3360 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.8e-19 99.4 198 35.4
Cpa.g.sc11.35 Carica papaya HOM05D006343 ORTHO05D005694 6.3e-19 99.0 314 39.2
DCAR_015701 Daucus carota HOM05D006343 ORTHO05D005694 8.2e-19 98.6 292 34.6
Nitab4.5_0002749g0010 Nicotiana tabacum HOM05D006343 ORTHO05D005694 1.8e-18 97.4 308 31.5
FAN06G3127 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.4e-18 97.1 198 35.4
CAN.G2424.1 Capsicum annuum HOM05D006343 ORTHO05D005694 3.1e-18 96.7 354 29.7
MELO3C021196.2 Cucumis melo HOM05D006343 ORTHO05D005694 3.1e-18 96.7 300 35.7
FAN10G1634 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.1e-18 96.3 198 34.8
FvH4_7g14880 Fragaria vesca HOM05D006343 ORTHO05D005694 5.3e-18 95.9 201 34.8
Rhsim06G0236200 Rhododendron simsii HOM05D006343 ORTHO05D005694 1.5e-17 94.4 303 33.3
TWI14G1134 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 7.7e-17 92.0 299 34.8
Oeu035728.1 Olea europaea HOM05D006343 ORTHO05D005694 1.0e-16 91.7 278 33.8
Solyc02g070700.3 Solanum lycopersicum HOM05D006343 ORTHO05D005694 1.0e-16 91.7 310 30.6
Thecc.01G356100 Theobroma cacao HOM05D006343 ORTHO05D005694 1.3e-16 91.3 291 37.8
Duzib133G0920 Durio zibethinus HOM05D006343 ORTHO05D005694 2.2e-16 90.5 304 38.2
CAN.G650.28 Capsicum annuum HOM05D006343 ORTHO05D005694 6.5e-16 89.0 237 32.5
DCAR_015699 Daucus carota HOM05D006343 ORTHO05D005694 1.1e-15 88.2 290 33.1
Sopen02g019780 Solanum pennellii HOM05D006343 ORTHO05D005694 1.1e-15 88.2 321 30.5
Haze_15537 Corylus avellana HOM05D006343 ORTHO05D005694 1.9e-15 87.4 305 37.0
unitig_22.g5289 Utricularia gibba HOM05D006343 ORTHO05D005694 3.2e-15 86.7 291 30.9
Aqoxy7G00256 Aquilegia oxysepala HOM05D006343 ORTHO05D005694 4.2e-15 86.3 337 30.0
ECA233G1044 Erigeron canadensis HOM05D006343 ORTHO05D005694 4.2e-15 86.3 327 30.6
THA.LOC104825850 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 4.7e-14 82.8 338 30.8
CDE02G1832 Ceratophyllum demersum HOM05D006343 ORTHO05D005694 7.9e-14 82.0 304 27.3
FAN01G2602 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.9e-14 82.0 192 34.9
PGR042G0313 Punica granatum HOM05D006343 ORTHO05D005694 1.4e-13 81.3 184 32.1
Gohir.A11G090700 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.8e-13 80.9 314 36.9
ClCG06G003540 Citrullus lanatus HOM05D006343 ORTHO05D005694 3.9e-13 79.7 300 32.7
BcaB01g02239 Brassica carinata HOM05D012121 ORTHO05D005694 8.8e-13 78.6 336 26.5
Potri.014G099800 Populus trichocarpa HOM05D006343 ORTHO05D005694 2.6e-12 77.0 216 31.0
Gohir.D08G153300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 3.3e-12 76.6 302 35.1
Migut.D00457 Erythranthe guttata HOM05D006343 ORTHO05D005694 4.4e-12 76.3 168 45.2
CARHR248400 Cardamine hirsuta HOM05D012121 ORTHO05D005694 7.4e-12 75.5 344 26.5
Thhalv10028840m.g Eutrema salsugineum HOM05D012121 ORTHO05D005694 7.4e-12 75.5 327 27.5
CDE06G1281 Ceratophyllum demersum HOM05D006343 ORTHO05D005694 2.2e-11 73.9 167 32.3
Medtr3g015950 Medicago truncatula HOM05D006343 ORTHO05D005694 2.2e-11 73.9 292 29.8
Medtr8g028845 Medicago truncatula HOM05D006343 ORTHO05D005694 2.2e-11 73.9 226 32.3
PSO782G1271 Papaver somniferum HOM05D020029 ORTHO05D005694 2.2e-11 73.9 189 31.7
PSO478G4526 Papaver somniferum HOM05D020029 ORTHO05D005694 8.2e-11 72.0 212 27.4
PSO478G0137 Papaver somniferum HOM05D020029 ORTHO05D005694 1.4e-10 71.2 203 36.0
PSO782G1147 Papaver somniferum HOM05D020029 ORTHO05D005694 1.8e-10 70.9 200 36.5
Sc01g0003550 Simmondsia chinensis HOM05D006343 ORTHO05D005694 1.6e-09 67.8 295 30.5
Carub.0006s3693 Capsella rubella HOM05D012121 ORTHO05D005694 2.6e-09 67.0 325 29.8
AL6G53170 Arabidopsis lyrata HOM05D012121 ORTHO05D005694 8.5e-08 62.0 330 30.3
THA.LOC104801575 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 8.5e-08 62.0 101 41.6
Actinidia10044 Actinidia chinensis HOM05D006343 ORTHO05D005694 1.1e-07 61.6 126 40.5
FAN03G0040 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.1e-07 61.6 83 41.0
Sp6g00380 Schrenkiella parvula HOM05D012121 ORTHO05D005694 1.1e-07 61.6 332 25.6
PGSC0003DMG400008290 Solanum tuberosum HOM05D006343 ORTHO05D005694 1.5e-07 61.2 171 28.7
FAN03G2349 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.5e-07 60.5 74 51.4
arahy.Tifrunner.gnm1.ann1.C4511I Arachis hypogaea HOM05D051984 ORTHO05D005694 3.2e-07 60.1 113 43.4
Medtr8g028835 Medicago truncatula HOM05D006343 ORTHO05D005694 3.2e-07 60.1 71 47.9
TPR.G17916 Trifolium pratense HOM05D006343 ORTHO05D005694 4.2e-07 59.7 73 47.9
arahy.Tifrunner.gnm1.ann1.ZG4E8S Arachis hypogaea HOM05D051984 ORTHO05D005694 7.2e-07 58.9 114 41.2
HPP92_025480 Vanilla planifolia HOM05D049984 ORTHO05D020951 7.2e-07 58.9 190 27.4
Gorai.004G159200 Gossypium raimondii HOM05D006343 ORTHO05D005694 9.4e-07 58.5 300 34.7
PSO782G0031 Papaver somniferum HOM05D020029 ORTHO05D005694 1.2e-06 58.2 203 26.6
AT4G00310 Arabidopsis thaliana HOM05D012121 ORTHO05D005694 1.6e-06 57.8 317 26.5
BcaC04g24184 Brassica carinata HOM05D012121 ORTHO05D005694 1.6e-06 57.8 338 23.7
BolC9t52962H Brassica oleracea HOM05D012121 ORTHO05D005694 1.6e-06 57.8 338 23.7
C09p00270 Brassica napus HOM05D012121 ORTHO05D005694 3.6e-06 56.6 340 23.2
Solyc03g095830.3 Solanum lycopersicum HOM05D064734 ORTHO05D005694 3.6e-06 56.6 224 28.1


User provided reference genes

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