Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 0.0e+00 1468.0 717 100.0
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 0.0e+00 1245.7 716 83.2
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 0.0e+00 1140.9 720 77.2
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 0.0e+00 1084.7 721 74.1
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.9e-306 1055.4 721 72.5
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.6e-305 1051.2 721 72.4
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 6.8e-304 1047.0 721 72.1
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 1.0e-296 1023.1 716 70.1
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 6.8e-296 1020.4 721 71.0
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 1.3e-294 1016.1 716 69.6
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 7.0e-293 1010.4 704 70.0
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 1.6e-292 1009.2 608 79.9
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 5.0e-291 1004.2 719 67.9
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 2.9e-286 988.4 717 67.5
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.9e-286 987.6 721 69.2
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 5.6e-282 974.2 707 67.5
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 5.4e-277 957.6 722 66.5
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 2.8e-273 945.3 721 65.5
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 8.9e-272 940.3 719 65.1
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 3.5e-268 928.3 718 63.0
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 3.9e-267 924.9 726 62.4
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 3.9e-267 924.9 716 63.4
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 1.5e-266 922.9 716 64.7
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 4.3e-266 921.4 716 64.1
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 9.0e-264 913.7 717 63.9
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 9.0e-264 913.7 716 63.1
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 9.9e-263 910.2 715 62.9
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.4e-262 907.5 716 62.7
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 2.4e-261 905.6 730 62.3
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 6.2e-257 891.0 717 61.2
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.4e-256 889.8 731 60.7
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 1.2e-255 886.7 722 62.2
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 3.4e-255 885.2 720 62.1
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 4.5e-255 884.8 726 61.6
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 5.8e-255 884.4 684 62.0
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 7.6e-255 884.0 678 64.5
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 1.3e-254 883.2 724 60.6
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 2.2e-254 882.5 699 63.4
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 2.2e-254 882.5 703 62.6
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.1e-253 880.2 690 63.6
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 1.1e-253 880.2 658 64.9
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 9.3e-253 877.1 717 60.4
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 4.6e-252 874.8 717 60.0
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 6.0e-252 874.4 679 62.4
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 6.0e-252 874.4 707 62.7
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 8.7e-251 870.5 695 62.9
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 1.5e-250 869.8 678 63.0
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 2.5e-250 869.0 721 60.2
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 1.1e-248 863.6 642 65.7
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 1.4e-248 863.2 721 59.4
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 2.4e-248 862.4 680 61.8
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 3.1e-248 862.1 720 60.7
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 5.3e-248 861.3 720 60.4
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 1.2e-247 860.1 723 59.3
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 5.8e-247 857.8 719 60.6
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 7.6e-247 857.4 720 59.6
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 2.9e-246 855.5 719 60.5
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 9.3e-245 850.5 726 58.7
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 2.5e-242 842.4 708 59.6
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 7.4e-242 840.9 656 63.1
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.3e-241 840.1 725 58.3
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 4.8e-241 838.2 724 59.1
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 6.9e-240 834.3 703 59.6
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 1.1e-237 827.0 723 58.0
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 2.2e-233 812.8 675 58.8
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 6.3e-233 811.2 683 57.7
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.1e-232 810.4 658 61.1
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 6.9e-232 807.7 710 58.0
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 9.0e-232 807.4 632 63.3
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.5e-231 806.6 683 58.7
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 5.9e-231 804.7 698 59.2
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.6e-228 796.6 659 59.2
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 3.0e-227 792.3 696 57.5
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 1.5e-226 790.0 683 58.7
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 1.5e-226 790.0 724 55.5
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 9.7e-226 787.3 724 56.9
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 1.3e-225 786.9 689 58.3
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.8e-225 785.0 571 66.7
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 1.8e-224 783.1 684 57.7
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 5.3e-224 781.6 682 56.5
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 5.3e-224 781.6 656 60.4
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 7.7e-223 777.7 713 56.7
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 1.0e-222 777.3 716 56.0
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 1.7e-222 776.5 716 56.3
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 2.5e-221 772.7 714 55.5
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.4e-219 766.9 710 55.8
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 1.8e-219 766.5 716 55.6
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 1.5e-218 763.5 727 55.3
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 3.3e-218 762.3 684 56.6
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 9.7e-218 760.8 703 55.0
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 9.7e-218 760.8 649 57.0
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 1.7e-217 760.0 724 54.3
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 3.7e-217 758.8 714 54.8
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 3.7e-217 758.8 684 56.4
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 4.8e-217 758.4 712 55.5
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 4.1e-216 755.4 684 56.3
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 7.0e-216 754.6 724 54.8
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 7.0e-216 754.6 724 54.8
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.4e-211 740.3 660 54.8
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 3.0e-211 739.2 717 54.3
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 3.7e-209 732.3 730 53.0
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 5.3e-208 728.4 727 53.6
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 1.2e-207 727.2 717 53.4
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 1.1e-205 720.7 753 52.1
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 1.9e-205 719.9 679 54.1
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.1e-204 716.5 669 54.6
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 8.0e-204 714.5 712 52.5
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 1.4e-203 713.8 711 53.7
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 2.0e-194 683.3 727 48.1
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.1e-192 677.6 657 54.9
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.7e-191 672.9 613 54.2
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 4.7e-188 662.1 769 46.0
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 1.6e-183 647.1 766 46.7
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 2.7e-183 646.4 715 48.0
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 6.4e-177 625.2 712 47.2
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 4.4e-170 602.4 634 50.2
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.4e-168 597.4 729 46.5
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 5.4e-168 595.5 598 52.2
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.6e-167 594.0 600 52.5
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 4.3e-165 585.9 690 44.5
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 4.7e-164 582.4 707 45.0
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.4e-163 580.9 420 65.0
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.4e-162 575.9 679 44.8
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 3.6e-156 556.2 448 61.6
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 5.3e-147 525.8 576 48.6
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 2.4e-144 516.9 530 49.2
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.3e-133 479.6 436 56.7
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.6e-114 417.2 606 40.9
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 1.5e-109 401.4 273 70.3
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 4.5e-106 389.8 383 51.4
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 5.7e-101 372.9 493 42.2
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.8e-100 370.5 231 75.8
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 1.5e-93 348.2 227 72.7
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 5.3e-91 339.7 354 47.7
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 6.1e-87 326.2 679 30.9
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 3.1e-83 313.9 413 41.2
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 4.5e-82 310.1 462 38.5
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 8.8e-78 295.8 293 54.3
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 4.9e-76 290.0 791 27.3
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 5.9e-74 283.1 510 31.8
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 1.2e-66 258.8 205 60.5
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 3.5e-58 230.7 199 57.8
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 7.1e-51 206.5 197 51.8
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 6.6e-33 146.7 143 53.1
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 4.6e-26 124.0 116 45.7
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.1e-22 112.8 106 53.8
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 3.1e-22 111.3 113 50.4
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 9.3e-19 99.8 65 78.5
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 1.0e-17 96.3 89 57.3
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.4e-14 85.9 149 34.2
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 3.8e-12 77.8 79 50.6
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.2e-10 72.8 65 58.5
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 1.5e-08 65.9 45 62.2
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 1.5e-08 65.9 63 50.8
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 2.5e-08 65.1 62 50.0
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 9.6e-08 63.2 50 56.0


User provided reference genes

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