Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G172700 Prunus persica HOM05D006253 ORTHO05D007666 1.0e-38 162.9 82 100.0
Prupe.6G016400 Prunus persica HOM05D006253 ORTHO05D007666 6.6e-30 133.7 72 94.4
Prupe.4G258000 Prunus persica HOM05D006253 ORTHO05D007666 4.5e-18 94.4 51 88.2
FvH4_2g06110 Fragaria vesca HOM05D006253 ORTHO05D007666 1.7e-17 92.4 51 90.2
FAN24G2487 Fragaria x ananassa HOM05D006253 ORTHO05D007666 1.7e-17 92.4 51 90.2
MD05G1080500 Malus domestica HOM05D006253 ORTHO05D007666 2.2e-17 92.0 51 90.2
Prupe.8G124200 Prunus persica HOM05D006253 ORTHO05D007666 2.2e-17 92.0 51 90.2
RcHm_v2.0_Chr6g0257111 Rosa chinensis HOM05D006253 ORTHO05D007666 2.2e-17 92.0 51 88.2
FAN27G3246 Fragaria x ananassa HOM05D006253 ORTHO05D007666 4.6e-15 84.3 57 78.9
Sed0027718 Sechium edule HOM05D006253 ORTHO05D007666 5.1e-14 80.9 83 59.0
Gohir.A01G006900 Gossypium hirsutum HOM05D006253 ORTHO05D007666 6.7e-14 80.5 51 82.4
Gohir.D01G007000 Gossypium hirsutum HOM05D006253 ORTHO05D007666 1.1e-13 79.7 83 57.8
Gorai.002G008000 Gossypium raimondii HOM05D006253 ORTHO05D007666 1.1e-13 79.7 51 82.4
QL11p035967 Quercus lobata HOM05D006253 ORTHO05D007666 1.1e-13 79.7 51 78.4
Duzib052G0633 Durio zibethinus HOM05D006253 ORTHO05D007666 1.5e-13 79.3 51 80.4
Potri.004G141400 Populus trichocarpa HOM05D006253 ORTHO05D007666 1.5e-13 79.3 51 78.4
CANSAT25G0326 Cannabis sativa HOM05D006253 ORTHO05D007666 1.9e-13 79.0 51 80.4
CANSAT35G0887 Cannabis sativa HOM05D006253 ORTHO05D007666 1.9e-13 79.0 51 80.4
Psat5g098280 Pisum sativum HOM05D006253 ORTHO05D007666 1.9e-13 79.0 51 80.4
MELO3C019508.2 Cucumis melo HOM05D006253 ORTHO05D007666 2.5e-13 78.6 51 76.5
CsaV3_3G018580 Cucumis sativus L. HOM05D006253 ORTHO05D007666 2.5e-13 78.6 51 76.5
Medtr8g099835 Medicago truncatula HOM05D006253 ORTHO05D007666 3.3e-13 78.2 51 76.5
COL.COLO4_32658 Corchorus olitorius HOM05D006253 ORTHO05D007666 4.3e-13 77.8 51 78.4
Sabra04G0093200 Salix brachista HOM05D006253 ORTHO05D007666 4.3e-13 77.8 51 76.5
Glyma.06G172100 Glycine max HOM05D006253 ORTHO05D007666 5.7e-13 77.4 51 76.5
MD10G1094500 Malus domestica HOM05D006253 ORTHO05D007666 5.7e-13 77.4 49 79.6
TPR.G19494 Trifolium pratense HOM05D006253 ORTHO05D007666 5.7e-13 77.4 51 76.5
Manes.01G064000 Manihot esculenta HOM05D006253 ORTHO05D007666 7.4e-13 77.0 51 76.5
Thecc.02G100600 Theobroma cacao HOM05D006253 ORTHO05D007666 7.4e-13 77.0 83 55.4
CiPaw.05G006400 Carya illinoinensis HOM05D006253 ORTHO05D007666 9.6e-13 76.6 51 74.5
FAN20G2826 Fragaria x ananassa HOM05D006253 ORTHO05D007666 9.6e-13 76.6 42 88.1
Lj6g0019810 Lotus japonicus HOM05D006253 ORTHO05D007666 9.6e-13 76.6 51 74.5
Nn5g30328 Nelumbo nucifera HOM05D006253 ORTHO05D007666 9.6e-13 76.6 83 54.2
Sc14g0002650 Simmondsia chinensis HOM05D006253 ORTHO05D007666 9.6e-13 76.6 51 76.5
THA.LOC104807358 Tarenaya hassleriana HOM05D006253 ORTHO05D007666 9.6e-13 76.6 79 54.4
Carub.0007s0590 Capsella rubella HOM05D006253 ORTHO05D007666 1.6e-12 75.9 47 78.7
VMungo1080G0444 Vigna mungo HOM05D006253 ORTHO05D007666 1.6e-12 75.9 50 76.0
A01p04020 Brassica napus HOM05D006253 ORTHO05D007666 2.1e-12 75.5 47 78.7
PGR142G1116 Punica granatum HOM05D006253 ORTHO05D007666 2.1e-12 75.5 44 81.8
TPR.G19178 Trifolium pratense HOM05D006253 ORTHO05D007666 2.1e-12 75.5 83 54.2
MBI02_g02992_MAGBIO Magnolia biondii HOM05D006253 ORTHO05D007666 2.8e-12 75.1 51 76.5
TAR376G0695 Trochodendron aralioides HOM05D006253 ORTHO05D007666 2.8e-12 75.1 51 76.5
Zm00001eb124670 Zea mays HOM05D006253 ORTHO05D007666 2.8e-12 75.1 64 65.6
AL7G16840 Arabidopsis lyrata HOM05D006253 ORTHO05D007666 3.7e-12 74.7 47 76.6
Thhalv10026394m.g Eutrema salsugineum HOM05D006253 ORTHO05D007666 3.7e-12 74.7 47 76.6
Hma1.2p1_0370F.1_g137800 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 3.7e-12 74.7 59 67.8
Os01g0142200 Oryza sativa ssp. japonica HOM05D006253 ORTHO05D007666 3.7e-12 74.7 51 72.5
arahy.Tifrunner.gnm1.ann1.1E2X9I Arachis hypogaea HOM05D006253 ORTHO05D007666 4.8e-12 74.3 51 70.6
CSS0003209 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 4.8e-12 74.3 51 74.5
Sp7g32200 Schrenkiella parvula HOM05D006253 ORTHO05D007666 4.8e-12 74.3 47 76.6
Actinidia12952 Actinidia chinensis HOM05D006253 ORTHO05D007666 6.2e-12 73.9 51 74.5
BcaNung06978 Brassica carinata HOM05D006253 ORTHO05D007666 6.2e-12 73.9 47 76.6
AT4G34412 Arabidopsis thaliana HOM05D006253 ORTHO05D007666 8.2e-12 73.6 47 74.5
C07p60590 Brassica napus HOM05D006253 ORTHO05D007666 8.2e-12 73.6 47 74.5
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 8.2e-12 73.6 47 74.5
BraA03t15367Z Brassica rapa HOM05D006253 ORTHO05D007666 8.2e-12 73.6 47 74.5
CARHR242350 Cardamine hirsuta HOM05D006253 ORTHO05D007666 8.2e-12 73.6 47 74.5
Ciclev10029390m.g Citrus clementina HOM05D006253 ORTHO05D007666 8.2e-12 73.6 50 76.0
Sed0021593 Sechium edule HOM05D006253 ORTHO05D007666 8.2e-12 73.6 50 74.0
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 1.1e-11 73.2 83 55.4
Ca_01013_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.1e-11 73.2 51 68.6
Lj5C209T13 Lonicera japonica HOM05D006253 ORTHO05D007666 1.1e-11 73.2 51 72.5
TWI79G0152 Tripterygium wilfordii HOM05D006253 ORTHO05D007666 1.1e-11 73.2 51 70.6
GSVIVG01031749001 Vitis vinifera HOM05D006253 ORTHO05D007666 1.1e-11 73.2 51 72.5
arahy.Tifrunner.gnm1.ann1.ETD7FQ Arachis hypogaea HOM05D006253 ORTHO05D007666 1.4e-11 72.8 51 68.6
Ca_15796_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.4e-11 72.8 51 72.5
Ca_30406_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.4e-11 72.8 51 72.5
Eucgr.I01155 Eucalyptus grandis HOM05D006253 ORTHO05D007666 1.8e-11 72.4 41 85.4
arahy.Tifrunner.gnm1.ann1.5N1458 Arachis hypogaea HOM05D006253 ORTHO05D007666 2.4e-11 72.0 51 66.7
arahy.Tifrunner.gnm1.ann1.AJN977 Arachis hypogaea HOM05D006253 ORTHO05D007666 2.4e-11 72.0 51 66.7
AUR62029937 Chenopodium quinoa HOM05D006253 ORTHO05D007666 2.4e-11 72.0 51 68.6
Glyma.04G194000 Glycine max HOM05D006253 ORTHO05D007666 2.4e-11 72.0 51 72.5
Aa31LG2G16330 Aethionema arabicum HOM05D006253 ORTHO05D007666 3.1e-11 71.6 47 72.3
Phvul.005G182700 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 3.1e-11 71.6 50 68.0
Rhsim03G0192100 Rhododendron simsii HOM05D006253 ORTHO05D007666 3.1e-11 71.6 51 72.5
Rhsim05G0084000 Rhododendron simsii HOM05D006253 ORTHO05D007666 3.1e-11 71.6 51 72.5
Lsat_1_v5_gn_5_112681 Lactuca sativa HOM05D006253 ORTHO05D007666 4.0e-11 71.2 43 74.4
Medtr2g105210 Medicago truncatula HOM05D006253 ORTHO05D007666 4.0e-11 71.2 51 72.5
PSO478G4849 Papaver somniferum HOM05D006253 ORTHO05D007666 6.9e-11 70.5 51 72.5
PSO782G1871 Papaver somniferum HOM05D006253 ORTHO05D007666 6.9e-11 70.5 51 72.5
C01p04340 Brassica napus HOM05D006253 ORTHO05D007666 9.0e-11 70.1 48 77.1
Phvul.002G266500 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 9.0e-11 70.1 50 70.0
EL10Ac5g11497 Beta vulgaris HOM05D006253 ORTHO05D007666 1.2e-10 69.7 57 66.7
CAN.G1041.15 Capsicum annuum HOM05D006253 ORTHO05D007666 1.5e-10 69.3 51 64.7
AUR62033746 Chenopodium quinoa HOM05D006253 ORTHO05D007666 1.5e-10 69.3 42 76.2
Lalb_Chr25g0286231 Lupinus albus HOM05D006253 ORTHO05D007666 2.6e-10 68.6 51 64.7
Sopen01g050480 Solanum pennellii HOM05D006253 ORTHO05D007666 4.5e-10 67.8 51 62.7
Prupe.4G259300 Prunus persica HOM05D006253 ORTHO05D007666 5.8e-10 67.4 38 81.6
BolC1t00422H Brassica oleracea HOM05D006253 ORTHO05D007666 7.6e-10 67.0 40 85.0
DCAR_007862 Daucus carota HOM05D006253 ORTHO05D007666 1.0e-09 66.6 50 68.0
Oeu010588.1 Olea europaea HOM05D006253 ORTHO05D007666 1.0e-09 66.6 43 67.4
Solyc01g108260.4 Solanum lycopersicum HOM05D006253 ORTHO05D007666 1.3e-09 66.2 50 62.0
SEGI_00233 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 2.2e-09 65.5 42 69.0
PGSC0003DMG400025894 Solanum tuberosum HOM05D006253 ORTHO05D007666 2.2e-09 65.5 51 60.8
SGA_v2.0_scaffold22G09667 Striga asiatica HOM05D006253 ORTHO05D007666 2.2e-09 65.5 43 69.8
AagrBONN_evm.TU.Sc2ySwM_344.4457 Anthoceros agrestis HOM05D006253 ORTHO05D007666 2.9e-09 65.1 51 56.9
MSTRG.27724 Avicennia marina HOM05D006253 ORTHO05D007666 2.9e-09 65.1 75 46.7
HPP92_001047 Vanilla planifolia HOM05D006253 ORTHO05D007666 2.9e-09 65.1 83 49.4
HanXRQChr10g0319791 Helianthus annuus HOM05D006253 ORTHO05D007666 3.8e-09 64.7 43 67.4
HanXRQChr16g0501301 Helianthus annuus HOM05D006253 ORTHO05D007666 3.8e-09 64.7 43 67.4
CSS0033941 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 5.0e-09 64.3 52 61.5
ECA234G4670 Erigeron canadensis HOM05D006253 ORTHO05D007666 5.0e-09 64.3 43 67.4
Mapoly0083s0082 Marchantia polymorpha HOM05D006253 ORTHO05D007666 6.5e-09 63.9 44 59.1
CBR_g38557 Chara braunii HOM05D006253 ORTHO05D007666 4.2e-08 61.2 43 62.8
SMO351G0094 Selaginella moellendorffii HOM05D006253 ORTHO05D007666 1.6e-07 59.3 51 56.9
Pp3c22_3990 Physcomitrium patens HOM05D006253 ORTHO05D007666 1.3e-06 56.2 44 52.3
Cc02_g18770 Coffea canephora HOM05D006253 ORTHO05D007666 3.9e-06 54.7 40 67.5


User provided reference genes

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