Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 1.3e-100 369.8 189 100.0
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 4.2e-88 328.2 188 88.3
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 5.2e-86 321.2 188 86.2
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 6.6e-81 304.3 187 80.7
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 6.6e-81 304.3 187 80.7
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 4.2e-80 301.6 185 80.5
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 2.8e-79 298.9 187 80.7
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 4.7e-79 298.1 187 80.2
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.0e-78 297.0 187 80.7
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.4e-78 296.6 185 78.4
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 3.0e-78 295.4 187 79.7
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.0e-78 295.4 187 80.2
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 4.0e-78 295.0 185 78.4
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 4.0e-78 295.0 185 78.4
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 4.0e-78 295.0 187 79.7
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 5.2e-78 294.7 184 77.7
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 1.2e-77 293.5 187 80.2
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 2.0e-77 292.7 187 77.0
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 2.6e-77 292.4 187 77.5
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.3e-76 290.0 187 77.5
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 4.9e-76 288.1 187 78.1
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.8e-75 286.2 185 76.8
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 2.4e-75 285.8 188 78.7
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 2.4e-75 285.8 188 78.7
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 2.4e-75 285.8 188 78.7
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 3.1e-75 285.4 188 78.2
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 3.1e-75 285.4 188 79.3
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 4.1e-75 285.0 187 76.5
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.1e-75 285.0 185 76.2
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.1e-75 285.0 185 76.2
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 7.0e-75 284.3 185 77.3
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 7.0e-75 284.3 185 77.8
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 9.2e-75 283.9 207 71.5
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 2.0e-74 282.7 188 74.5
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 2.0e-74 282.7 187 74.9
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 7.8e-74 280.8 187 75.9
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 3.8e-73 278.5 181 76.8
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.1e-72 276.9 190 74.2
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 1.5e-72 276.6 187 74.3
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 2.5e-72 275.8 187 73.8
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 4.3e-72 275.0 187 73.8
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 7.3e-72 274.2 185 75.1
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 9.5e-72 273.9 188 73.4
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 1.6e-71 273.1 203 72.4
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 4.7e-71 271.6 187 72.7
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 4.7e-71 271.6 209 67.5
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 6.1e-71 271.2 185 74.1
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 4.0e-70 268.5 188 73.4
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 8.9e-70 267.3 185 71.9
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 8.9e-70 267.3 187 72.2
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.6e-69 265.8 187 72.7
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 2.6e-69 265.8 187 72.7
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 3.4e-69 265.4 185 70.8
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 3.4e-69 265.4 188 70.7
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 5.8e-69 264.6 187 71.7
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 5.8e-69 264.6 187 71.1
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 2.9e-68 262.3 187 70.6
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 3.7e-68 261.9 179 73.7
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.7e-68 261.9 187 71.7
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 4.9e-68 261.5 187 70.6
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 1.1e-67 260.4 179 72.6
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 1.4e-67 260.0 179 74.3
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.4e-67 259.2 182 72.5
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 2.4e-67 259.2 189 67.2
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 3.2e-67 258.8 174 74.1
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 3.2e-67 258.8 178 71.9
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 5.4e-67 258.1 181 71.3
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 7.0e-67 257.7 181 71.3
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 7.0e-67 257.7 187 72.2
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.2e-66 256.9 187 70.1
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 1.6e-66 256.5 187 67.4
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 2.0e-66 256.1 176 70.5
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 6.0e-66 254.6 174 72.4
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 7.8e-66 254.2 187 67.4
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 1.0e-65 253.8 174 70.7
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 1.3e-65 253.4 181 70.2
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.7e-65 253.1 188 68.1
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 5.0e-65 251.5 188 68.6
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 5.0e-65 251.5 189 66.1
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 8.6e-65 250.8 188 68.1
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 4.3e-64 248.4 152 80.3
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 4.3e-64 248.4 154 80.5
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 5.6e-64 248.1 188 67.6
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 5.6e-64 248.1 181 67.4
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 5.6e-64 248.1 174 70.1
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 1.2e-63 246.9 179 69.3
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 1.6e-63 246.5 202 63.9
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 4.7e-63 245.0 174 69.5
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 2.3e-62 242.7 174 68.4
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 3.1e-62 242.3 178 67.4
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 1.5e-61 240.0 182 64.8
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 2.6e-61 239.2 186 65.6
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 1.7e-60 236.5 181 67.4
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.9e-60 235.7 160 73.1
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 6.4e-60 234.6 273 49.5
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 9.2e-59 230.7 176 64.8
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 9.2e-59 230.7 174 64.4
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 4.3e-56 221.9 154 72.1
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 7.3e-56 221.1 191 58.6
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.5e-53 213.4 176 60.2
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 1.5e-53 213.4 185 55.7
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 6.4e-52 208.0 171 68.4
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 9.2e-51 204.1 185 55.7
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 1.7e-49 199.9 181 56.4
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 3.9e-49 198.7 184 60.3
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 6.6e-49 198.0 185 55.1
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 1.9e-48 196.4 185 55.1
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 1.2e-47 193.7 181 55.8
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 2.1e-47 193.0 185 55.1
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 2.4e-46 189.5 181 55.2
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 1.3e-44 183.7 181 54.1
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 4.9e-44 181.8 181 54.1
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 2.1e-42 176.4 181 52.5
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 6.0e-42 174.9 181 51.9
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 6.0e-42 174.9 181 51.9
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 6.0e-42 174.9 181 51.9
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 1.3e-41 173.7 121 73.6
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 1.1e-40 170.6 181 50.8
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.9e-40 169.9 106 80.2
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 7.3e-40 167.9 181 49.7
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 7.3e-40 167.9 181 49.7
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.1e-38 162.5 154 59.1
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 3.4e-37 159.1 148 56.8
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 6.0e-34 148.3 173 48.0
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.1e-32 144.1 112 66.1
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 2.4e-27 126.3 86 76.7
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 3.9e-25 119.0 78 73.1
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 3.3e-24 115.9 102 60.8
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 5.3e-22 108.6 81 66.7
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 3.4e-21 105.9 74 68.9
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 7.6e-21 104.8 60 83.3
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 8.4e-20 101.3 155 40.0
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 5.5e-19 98.6 85 55.3
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 1.2e-18 97.4 163 39.9
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 3.3e-16 89.4 159 32.7
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.3e-15 87.4 74 55.4
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.6e-15 87.0 79 54.4
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.1e-15 86.7 80 52.5
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 1.8e-14 83.6 79 59.5
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 1.2e-13 80.9 118 39.8
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.5e-13 80.5 90 52.2
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.5e-13 80.5 66 66.7


User provided reference genes

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