Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 1.2e-68 263.1 134 100.0
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 1.0e-48 196.8 131 79.4
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 8.8e-48 193.7 134 76.9
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 5.0e-43 177.9 134 72.4
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 5.6e-34 147.9 134 64.9
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 6.8e-32 141.0 139 61.9
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.7e-30 136.3 134 61.2
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.9e-30 135.6 134 61.2
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.9e-30 135.6 134 61.2
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.9e-30 134.8 157 55.4
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 9.2e-29 130.6 138 53.6
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 1.0e-27 127.1 140 55.7
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 2.3e-27 125.9 136 53.7
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 3.0e-27 125.6 112 66.1
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 5.0e-27 124.8 138 53.6
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 5.0e-27 124.8 138 55.1
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 2.5e-26 122.5 136 49.3
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 5.6e-26 121.3 123 56.9
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 7.3e-26 120.9 121 56.2
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 9.5e-26 120.6 142 48.6
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 2.1e-25 119.4 139 51.1
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 2.8e-25 119.0 138 50.7
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 2.8e-25 119.0 137 52.6
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 2.8e-25 119.0 139 51.8
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 6.2e-25 117.9 142 52.8
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 1.1e-24 117.1 138 50.0
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 1.1e-24 117.1 138 49.3
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 2.3e-24 115.9 133 53.4
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 3.1e-24 115.5 138 50.7
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 3.1e-24 115.5 132 52.3
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 5.2e-24 114.8 133 55.6
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 8.9e-24 114.0 139 48.9
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 8.9e-24 114.0 132 53.0
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.3e-22 110.2 135 51.1
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 2.9e-22 109.0 135 50.4
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 2.9e-22 109.0 138 48.6
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 3.7e-22 108.6 134 48.5
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 6.4e-22 107.8 115 54.8
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 6.4e-22 107.8 136 51.5
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 8.3e-22 107.5 142 50.0
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 1.1e-21 107.1 134 50.0
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 4.1e-21 105.1 138 47.8
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 5.4e-21 104.8 136 44.9
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 9.2e-21 104.0 132 47.7
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 2.1e-20 102.8 140 47.9
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 2.1e-20 102.8 138 47.8
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 4.6e-20 101.7 136 46.3
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 6.0e-20 101.3 139 47.5
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 7.8e-20 100.9 139 48.9
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 1.0e-19 100.5 134 48.5
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.3e-19 100.1 134 47.8
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 2.3e-19 99.4 140 45.7
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 2.3e-19 99.4 134 47.8
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 2.3e-19 99.4 134 47.8
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 2.3e-19 99.4 142 44.4
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 3.0e-19 99.0 140 45.0
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 3.9e-19 98.6 114 54.4
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 8.6e-19 97.4 138 44.2
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 8.6e-19 97.4 131 48.9
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 1.1e-18 97.1 133 48.9
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 1.1e-18 97.1 138 42.8
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 1.5e-18 96.7 130 46.9
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 2.5e-18 95.9 137 43.8
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 3.3e-18 95.5 86 57.0
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 3.3e-18 95.5 86 57.0
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 4.3e-18 95.1 135 46.7
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 5.6e-18 94.7 126 44.4
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 9.5e-18 94.0 86 58.1
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 9.5e-18 94.0 86 58.1
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 1.6e-17 93.2 86 58.1
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 1.6e-17 93.2 137 46.7
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 2.1e-17 92.8 144 46.5
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 3.6e-17 92.0 131 42.7
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 3.6e-17 92.0 128 43.0
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 4.7e-17 91.7 116 50.9
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 4.7e-17 91.7 118 45.8
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 6.2e-17 91.3 145 42.8
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 1.1e-16 90.5 138 42.0
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 1.1e-16 90.5 144 45.1
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 1.4e-16 90.1 97 53.6
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 3.1e-16 89.0 133 47.4
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 8.9e-16 87.4 137 40.9
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 1.2e-15 87.0 92 53.3
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 1.2e-15 87.0 139 42.4
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 2.0e-15 86.3 134 45.5
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 2.6e-15 85.9 135 43.7
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 3.4e-15 85.5 143 39.9
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 3.4e-15 85.5 137 38.0
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 4.4e-15 85.1 159 36.5
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 4.4e-15 85.1 145 40.0
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 5.8e-15 84.7 87 56.3
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 5.8e-15 84.7 87 56.3
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 5.8e-15 84.7 134 38.8
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 5.8e-15 84.7 112 46.4
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 9.9e-15 84.0 86 53.5
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 1.3e-14 83.6 119 43.7
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 1.7e-14 83.2 138 40.6
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 3.7e-14 82.0 113 44.2
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 3.7e-14 82.0 130 38.5
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 4.9e-14 81.6 86 50.0
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 8.4e-14 80.9 121 46.3
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 8.4e-14 80.9 121 46.3
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 8.4e-14 80.9 128 41.4
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 8.4e-14 80.9 106 50.9
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 1.1e-13 80.5 117 43.6
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 1.4e-13 80.1 89 55.1
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 1.4e-13 80.1 130 43.8
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 1.9e-13 79.7 80 56.2
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 1.9e-13 79.7 127 44.1
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 2.4e-13 79.3 138 39.9
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 7.1e-13 77.8 111 44.1
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 6.0e-12 74.7 67 58.2
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 7.8e-12 74.3 111 45.0
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 2.3e-11 72.8 108 45.4
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 3.0e-11 72.4 137 37.2
AL5G43630 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 1.9e-10 69.7 119 38.7
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 5.6e-10 68.2 111 42.3
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 7.3e-10 67.8 138 37.0
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 9.6e-10 67.4 73 54.8
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 1.2e-09 67.0 87 42.5
Medtr8g095650 Medicago truncatula HOM05D000509 ORTHO05D006393 2.8e-09 65.9 86 45.3
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 3.6e-09 65.5 98 42.9
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 3.6e-09 65.5 67 50.7
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 3.6e-09 65.5 141 36.9
AL1G53560 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 4.7e-09 65.1 67 50.7
ClCG06G003680 Citrullus lanatus HOM05D000509 ORTHO05D006393 4.7e-09 65.1 122 40.2
Potri.006G202400 Populus trichocarpa HOM05D000509 ORTHO05D006393 4.7e-09 65.1 89 49.4
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 6.2e-09 64.7 107 43.0
DCAR_015993 Daucus carota HOM05D000509 ORTHO05D006393 8.1e-09 64.3 88 50.0
PSO063G2671 Papaver somniferum HOM05D000509 ORTHO05D006393 1.1e-08 63.9 127 37.0
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 1.4e-08 63.5 97 48.5
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 8.9e-08 60.8 118 39.8
AT4G07940 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 2.6e-07 59.3 123 35.8
Aqoxy7G00306 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 3.4e-07 58.9 86 47.7
BcaC09g52246 Brassica carinata HOM05D000509 ORTHO05D006393 9.9e-07 57.4 68 52.9
Atru.chr5.498 Acer truncatum HOM05D000509 ORTHO05D006393 8.4e-06 54.3 44 63.6


User provided reference genes

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