Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 4.2e-72 274.6 142 100.0
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 1.4e-38 163.3 135 62.2
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 3.7e-36 155.2 144 57.6
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 2.4e-35 152.5 150 56.0
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 1.6e-34 149.8 139 59.7
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 7.7e-34 147.5 138 58.0
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.0e-33 147.1 138 58.0
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.0e-33 147.1 138 58.0
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 1.7e-33 146.4 138 57.2
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 3.8e-33 145.2 135 60.0
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 6.5e-33 144.4 138 57.2
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 1.1e-32 143.7 134 56.0
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.9e-32 142.9 138 57.2
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 6.1e-31 137.9 117 67.5
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 8.0e-31 137.5 133 57.1
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 1.0e-30 137.1 136 56.6
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 1.4e-30 136.7 136 55.1
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 4.0e-30 135.2 128 60.2
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 1.5e-29 133.3 136 54.4
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 4.4e-29 131.7 134 59.0
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 5.7e-29 131.3 139 52.5
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 9.7e-29 130.6 141 53.2
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 2.2e-28 129.4 145 53.8
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 2.2e-28 129.4 144 52.8
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 2.8e-28 129.0 139 54.0
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 6.3e-28 127.9 126 57.9
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 1.1e-27 127.1 197 42.1
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 5.3e-27 124.8 119 56.3
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 5.9e-26 121.3 118 55.9
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 5.9e-26 121.3 156 47.4
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 1.3e-25 120.2 138 47.1
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 2.9e-25 119.0 119 54.6
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 5.0e-25 118.2 147 44.9
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 6.5e-25 117.9 136 46.3
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 8.5e-25 117.5 136 50.0
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 1.5e-24 116.7 125 52.8
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 2.5e-24 115.9 133 49.6
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 3.2e-24 115.5 148 48.6
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 4.2e-24 115.2 138 49.3
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 7.2e-24 114.4 131 53.4
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 7.2e-24 114.4 145 51.0
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.2e-23 113.6 139 48.2
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 1.2e-23 113.6 129 53.5
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 2.7e-23 112.5 134 45.5
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 3.6e-23 112.1 139 48.2
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 4.7e-23 111.7 141 41.1
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 6.1e-23 111.3 142 45.8
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 8.0e-23 110.9 125 45.6
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 8.0e-23 110.9 145 48.3
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 8.0e-23 110.9 140 45.0
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 1.8e-22 109.8 135 48.1
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 2.3e-22 109.4 135 44.4
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 3.0e-22 109.0 125 51.2
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 6.8e-22 107.8 137 46.7
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 8.8e-22 107.5 137 44.5
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 2.0e-21 106.3 123 44.7
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 2.0e-21 106.3 145 46.2
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 4.4e-21 105.1 136 44.9
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 9.8e-21 104.0 131 42.7
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 1.3e-20 103.6 143 42.7
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 1.3e-20 103.6 143 45.5
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 1.7e-20 103.2 143 44.8
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 3.7e-20 102.1 136 43.4
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 3.7e-20 102.1 127 48.0
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 3.7e-20 102.1 140 40.0
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 6.3e-20 101.3 149 40.9
Sed0021596 Sechium edule HOM05D006065 ORTHO05D007672 6.3e-20 101.3 137 45.3
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 1.4e-19 100.1 140 42.9
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 1.8e-19 99.8 127 44.9
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 1.8e-19 99.8 114 47.4
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 1.8e-19 99.8 127 44.1
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 2.4e-19 99.4 130 43.1
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 3.1e-19 99.0 136 41.2
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 3.1e-19 99.0 140 43.6
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 4.1e-19 98.6 136 41.2
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 5.4e-19 98.2 135 43.0
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 9.1e-19 97.4 134 44.8
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 1.6e-18 96.7 108 47.2
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 1.6e-18 96.7 142 41.5
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 1.6e-18 96.7 141 41.1
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 2.0e-18 96.3 144 39.6
Nitab4.5_0001702g0100 Nicotiana tabacum HOM05D006065 ORTHO05D007672 2.7e-18 95.9 118 49.2
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 2.7e-18 95.9 113 45.1
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 4.5e-18 95.1 130 44.6
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 4.5e-18 95.1 124 46.0
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 4.5e-18 95.1 132 43.2
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 5.9e-18 94.7 132 45.5
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 5.9e-18 94.7 113 45.1
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 1.0e-17 94.0 167 35.9
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 1.0e-17 94.0 136 40.4
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 1.7e-17 93.2 142 38.7
MD01G1057900 Malus domestica HOM05D006065 ORTHO05D007672 5.0e-17 91.7 75 72.0
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 5.0e-17 91.7 142 38.7
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 3.3e-16 89.0 128 39.1
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 9.5e-16 87.4 122 40.2
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 2.8e-15 85.9 145 36.6
Nitab4.5_0008002g0050 Nicotiana tabacum HOM05D006065 ORTHO05D007672 3.6e-15 85.5 125 41.6
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 3.6e-15 85.5 215 31.6
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 6.1e-15 84.7 145 38.6
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 3.0e-14 82.4 131 38.2
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 3.0e-14 82.4 131 38.9
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 5.2e-14 81.6 141 40.4
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 5.2e-14 81.6 141 40.4
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 5.2e-14 81.6 141 40.4
Eucgr.D02286 Eucalyptus grandis HOM05D006065 ORTHO05D007672 6.8e-14 81.3 112 43.8
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 1.2e-13 80.5 145 38.6
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 2.0e-13 79.7 145 37.9
Nitab4.5_0005277g0010 Nicotiana tabacum HOM05D006065 ORTHO05D007672 4.4e-13 78.6 124 38.7
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 1.7e-12 76.6 140 39.3
Oeu020560.2 Olea europaea HOM05D006065 ORTHO05D007672 2.2e-12 76.3 200 30.5
Nn1g01520 Nelumbo nucifera HOM05D006065 ORTHO05D007672 1.6e-10 70.1 105 45.7
AUR62022552 Chenopodium quinoa HOM05D006065 ORTHO05D007672 1.7e-09 66.6 88 42.0
AUR62004346 Chenopodium quinoa HOM05D006065 ORTHO05D007672 6.6e-09 64.7 88 42.0
CSS0003041 Camellia sinensis var. sinensis HOM05D006065 ORTHO05D007672 8.6e-09 64.3 181 30.4
AL1G10640 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 1.9e-08 63.2 148 33.8
CDE02G4271 Ceratophyllum demersum HOM05D000667 ORTHO05D009057 3.3e-08 62.4 103 32.0
Os04g0558500 Oryza sativa ssp. japonica HOM05D006065 ORTHO05D007672 3.3e-08 62.4 124 35.5
TAR375G0974 Trochodendron aralioides HOM05D006065 ORTHO05D007672 7.3e-08 61.2 70 51.4
SEGI_06767 Sequoiadendron giganteum HOM05D006065 ORTHO05D007672 2.1e-07 59.7 132 28.0
Solyc01g094510.2 Solanum lycopersicum HOM05D006065 ORTHO05D007672 2.1e-07 59.7 103 41.7
AT1G01715 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 2.8e-07 59.3 145 32.4
Potri.002G159100 Populus trichocarpa HOM05D006065 ORTHO05D007672 4.7e-07 58.5 53 58.5
MELO3C006115.2 Cucumis melo HOM05D006065 ORTHO05D007672 1.8e-06 56.6 97 36.1
CARHR248680 Cardamine hirsuta HOM05D006065 ORTHO05D007672 2.3e-06 56.2 136 32.4


User provided reference genes

Program Settings