Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 3.8e-35 151.0 78 100.0
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 1.1e-26 122.9 79 78.5
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.1e-26 122.9 79 78.5
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.1e-26 122.9 79 78.5
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.1e-26 122.9 79 78.5
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 7.2e-26 120.2 79 77.2
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.7e-25 117.5 78 75.6
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 2.3e-24 115.2 79 75.9
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 6.8e-24 113.6 80 71.2
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 3.4e-23 111.3 79 73.4
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 3.7e-22 107.8 79 69.6
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 1.1e-21 106.3 74 71.6
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.1e-21 104.8 115 53.9
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 5.4e-21 104.0 80 70.0
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 7.0e-21 103.6 82 68.3
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 7.0e-21 103.6 79 65.8
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 2.0e-20 102.1 79 64.6
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 3.5e-20 101.3 79 65.8
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 4.5e-20 100.9 80 67.5
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 5.9e-20 100.5 109 56.0
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 5.9e-20 100.5 77 64.9
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 1.7e-19 99.0 78 61.5
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 1.7e-19 99.0 78 62.8
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 1.7e-19 99.0 78 64.1
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 2.3e-19 98.6 79 65.8
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 2.9e-19 98.2 79 64.6
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 2.9e-19 98.2 77 66.2
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 3.8e-19 97.8 59 79.7
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 5.0e-19 97.4 71 71.8
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 6.6e-19 97.1 77 67.5
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 8.6e-19 96.7 79 64.6
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 1.5e-18 95.9 59 78.0
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 1.9e-18 95.5 76 64.5
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 2.5e-18 95.1 63 73.0
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 2.5e-18 95.1 79 63.3
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 3.3e-18 94.7 59 76.3
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 3.3e-18 94.7 77 63.6
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 3.3e-18 94.7 78 61.5
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 3.3e-18 94.7 61 73.8
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 4.2e-18 94.4 77 63.6
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 5.5e-18 94.0 77 62.3
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 9.5e-18 93.2 78 60.3
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 1.6e-17 92.4 61 72.1
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 2.8e-17 91.7 60 71.7
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 3.6e-17 91.3 61 72.1
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 3.6e-17 91.3 77 62.3
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 4.7e-17 90.9 61 73.8
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 8.0e-17 90.1 85 58.8
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 8.0e-17 90.1 78 59.0
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 1.0e-16 89.7 79 59.5
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.0e-16 89.7 79 62.0
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 1.0e-16 89.7 76 61.8
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.4e-16 89.4 79 59.5
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 1.4e-16 89.4 79 59.5
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.8e-16 89.0 75 60.0
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 1.8e-16 89.0 79 58.2
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 2.3e-16 88.6 66 65.2
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 3.0e-16 88.2 79 58.2
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 3.0e-16 88.2 79 59.5
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 5.2e-16 87.4 79 57.0
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 5.2e-16 87.4 60 68.3
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 6.8e-16 87.0 62 67.7
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 8.9e-16 86.7 63 63.5
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 1.2e-15 86.3 61 68.9
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 1.2e-15 86.3 60 70.0
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 1.5e-15 85.9 79 58.2
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 2.6e-15 85.1 59 71.2
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 3.4e-15 84.7 71 60.6
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 3.4e-15 84.7 59 69.5
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 3.4e-15 84.7 59 69.5
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 3.4e-15 84.7 59 69.5
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 3.4e-15 84.7 59 69.5
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 4.4e-15 84.3 55 74.5
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 5.7e-15 84.0 62 62.9
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 5.7e-15 84.0 79 55.7
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 5.7e-15 84.0 60 68.3
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 6.3e-14 80.5 61 62.3
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 1.1e-13 79.7 79 53.2
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 1.1e-13 79.7 85 52.9
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 1.4e-13 79.3 80 56.2
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.4e-13 78.6 80 55.0
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 3.2e-13 78.2 80 53.8
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 7.0e-13 77.0 59 61.0
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 9.2e-13 76.6 70 55.7
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 3.5e-12 74.7 50 70.0
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 5.9e-12 73.9 59 55.9
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 7.8e-12 73.6 65 60.0
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.3e-11 72.8 80 51.2
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 1.5e-10 69.3 43 76.7
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 1.5e-10 69.3 68 54.4
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 7.3e-10 67.0 57 59.6
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 7.3e-10 67.0 68 54.4
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 8.0e-09 63.5 56 58.9
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 1.5e-07 59.3 38 71.1
Glyma.07G072000 Glycine max HOM05D007705 ORTHO05D009720 2.9e-06 55.1 37 67.6


User provided reference genes

Program Settings