Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 2.6e-104 382.1 195 100.0
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 4.3e-67 258.5 196 71.4
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 2.1e-66 256.1 197 72.1
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 2.9e-55 219.2 198 63.1
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 3.6e-50 202.2 198 60.1
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 1.1e-49 200.7 218 55.0
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 1.4e-49 200.3 215 52.1
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 2.3e-49 199.5 222 54.5
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 3.1e-49 199.1 218 51.4
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.5e-48 194.5 194 58.8
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 9.9e-48 194.1 194 58.8
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.9e-47 192.6 194 58.8
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 1.9e-46 189.9 194 59.3
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.1e-46 188.0 194 58.8
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 2.1e-45 186.4 196 53.1
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 4.6e-45 185.3 206 51.5
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 4.6e-45 185.3 192 57.3
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 3.3e-43 179.1 215 52.6
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.1e-41 174.1 189 55.0
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 2.4e-41 172.9 165 58.2
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 6.8e-41 171.4 160 58.1
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 7.6e-40 167.9 207 49.8
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 1.3e-39 167.2 158 52.5
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 2.2e-39 166.4 214 47.2
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 8.4e-39 164.5 159 55.3
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 8.4e-39 164.5 191 51.8
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 1.1e-38 164.1 153 55.6
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 1.1e-38 164.1 205 49.8
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 6.0e-37 158.3 202 50.0
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 6.0e-37 158.3 204 49.0
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 6.0e-37 158.3 175 50.9
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.3e-36 157.1 155 51.0
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 2.3e-36 156.4 179 46.9
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 3.0e-36 156.0 219 45.7
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 3.0e-36 156.0 166 53.6
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.9e-35 153.3 179 46.4
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 2.5e-35 152.9 157 54.1
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 2.5e-35 152.9 156 50.0
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.3e-35 152.5 179 46.4
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 4.3e-35 152.1 159 50.9
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 4.3e-35 152.1 155 53.5
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 5.6e-35 151.8 168 51.8
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 2.8e-34 149.4 183 49.2
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 6.2e-34 148.3 198 44.9
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 6.2e-34 148.3 167 48.5
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 8.1e-34 147.9 160 47.5
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 8.1e-34 147.9 167 49.7
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 2.4e-33 146.4 204 43.6
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 4.0e-33 145.6 171 50.3
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 5.2e-33 145.2 199 45.7
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 6.9e-33 144.8 188 44.1
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 6.9e-33 144.8 202 44.6
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 9.0e-33 144.4 176 46.6
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.5e-32 143.7 163 49.1
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 5.8e-32 141.7 151 49.0
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 7.6e-32 141.4 162 49.4
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 7.6e-32 141.4 212 43.4
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 7.6e-32 141.4 179 48.0
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.7e-31 140.2 212 43.4
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 2.9e-31 139.4 193 45.1
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 4.9e-31 138.7 171 47.4
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 4.9e-31 138.7 192 43.2
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 4.9e-31 138.7 168 47.6
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 6.4e-31 138.3 200 44.5
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 1.1e-30 137.5 161 46.6
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 1.1e-30 137.5 184 45.7
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 1.4e-30 137.1 165 47.9
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.9e-30 136.7 174 44.3
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 2.4e-30 136.3 186 45.7
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 2.4e-30 136.3 157 48.4
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 3.2e-30 136.0 195 43.1
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 3.2e-30 136.0 160 47.5
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 4.2e-30 135.6 168 46.4
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 5.4e-30 135.2 160 47.5
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 7.1e-30 134.8 153 48.4
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.1e-30 134.8 152 53.9
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 1.2e-29 134.0 215 40.9
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 2.7e-29 132.9 184 42.9
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.7e-28 130.2 153 53.6
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 1.7e-28 130.2 169 45.0
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 2.3e-28 129.8 164 44.5
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 3.9e-28 129.0 210 41.4
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 6.6e-28 128.3 193 42.5
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 8.7e-28 127.9 204 41.2
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 1.5e-27 127.1 180 43.9
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 1.5e-27 127.1 160 43.8
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 2.5e-27 126.3 171 43.9
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 2.5e-27 126.3 167 43.1
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 5.6e-27 125.2 151 43.7
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 9.6e-27 124.4 162 44.4
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 1.4e-25 120.6 208 38.9
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 3.1e-25 119.4 202 35.1
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 4.0e-25 119.0 210 39.0
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 5.3e-25 118.6 192 42.2
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 9.0e-25 117.9 136 48.5
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 9.0e-25 117.9 203 37.4
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 1.2e-24 117.5 174 39.7
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.5e-24 117.1 191 37.7
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 2.0e-24 116.7 172 40.7
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 2.6e-24 116.3 148 43.2
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 2.6e-24 116.3 145 46.9
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 4.5e-24 115.5 88 70.5
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.8e-24 115.2 114 61.4
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 7.6e-24 114.8 196 38.3
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 7.6e-24 114.8 196 38.3
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.6e-24 114.8 110 57.3
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 9.9e-24 114.4 202 39.6
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 9.9e-24 114.4 214 38.8
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 1.3e-23 114.0 170 40.0
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 1.7e-23 113.6 198 35.4
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.7e-23 113.6 108 63.0
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 2.2e-23 113.2 215 38.1
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 2.2e-23 113.2 160 43.1
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 2.9e-23 112.8 170 39.4
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 4.9e-23 112.1 174 39.7
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 3.2e-22 109.4 193 38.3
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 5.4e-22 108.6 202 37.1
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 5.4e-22 108.6 167 39.5
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 4.6e-21 105.5 206 36.4
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 2.3e-20 103.2 191 37.7
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 1.5e-19 100.5 104 51.0
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 4.3e-19 99.0 222 35.1
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.4e-17 94.0 159 37.7
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.2e-16 90.9 138 42.0
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.5e-16 90.5 195 32.3
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 2.0e-16 90.1 195 32.3
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 1.7e-15 87.0 190 28.4
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.2e-15 86.7 224 33.9
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 1.4e-14 84.0 182 35.2
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-13 79.7 197 33.0
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-13 79.7 197 33.0
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 4.6e-13 79.0 104 46.2
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 6.0e-13 78.6 125 40.0
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 1.5e-11 73.9 83 48.2
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 3.3e-11 72.8 116 42.2
Os04g0556900 Oryza sativa ssp. japonica HOM05D005367 ORTHO05D006328 4.3e-11 72.4 169 30.2
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 2.8e-10 69.7 102 38.2
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 2.4e-09 66.6 81 45.7
CARHR000590 Cardamine hirsuta HOM05D005367 ORTHO05D006328 2.0e-08 63.5 105 33.3
CSS0041755 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 3.8e-07 59.3 42 64.3


User provided reference genes

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