Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 0.0e+00 1315.1 651 100.0
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 0.0e+00 1180.2 645 89.6
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 0.0e+00 1146.7 660 86.5
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 0.0e+00 1135.6 659 85.7
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 0.0e+00 1134.8 659 86.0
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 0.0e+00 1115.9 697 81.2
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 0.0e+00 1113.2 686 82.2
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 0.0e+00 1097.4 679 82.0
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 0.0e+00 1092.8 679 81.7
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 3.3e-289 998.0 648 75.3
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 1.2e-288 996.1 648 74.7
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 3.6e-288 994.6 646 75.2
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 2.0e-286 988.8 653 77.0
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 7.6e-286 986.9 647 75.9
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 7.6e-286 986.9 641 76.9
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 1.3e-285 986.1 644 75.3
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 1.7e-285 985.7 651 74.7
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 4.1e-284 981.1 641 75.4
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 7.1e-284 980.3 653 76.4
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 9.6e-281 969.9 650 74.6
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 2.7e-275 951.8 631 75.0
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 8.7e-274 946.8 642 74.0
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 1.4e-271 939.5 651 74.2
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 1.5e-270 936.0 650 74.2
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 5.4e-268 927.5 648 72.1
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 3.5e-267 924.9 651 68.8
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 6.0e-267 924.1 599 76.3
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 1.3e-264 916.4 654 72.0
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 1.1e-263 913.3 655 71.1
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 1.7e-261 906.0 639 69.3
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 2.2e-261 905.6 650 70.3
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 8.4e-261 903.7 643 71.5
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 1.9e-260 902.5 643 71.1
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 3.5e-259 898.3 648 68.7
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 4.6e-259 897.9 652 70.4
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 7.9e-259 897.1 647 69.2
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 1.3e-258 896.3 639 68.5
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 2.3e-258 895.6 645 68.2
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 6.7e-258 894.0 632 70.3
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 7.4e-257 890.6 662 68.3
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 2.1e-256 889.0 642 68.8
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 8.1e-256 887.1 634 69.4
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 1.1e-255 886.7 586 73.9
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 1.8e-255 885.9 627 70.0
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 2.4e-255 885.6 631 68.6
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 6.9e-255 884.0 641 67.2
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 6.9e-255 884.0 650 67.7
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 2.0e-254 882.5 631 69.6
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 5.8e-254 880.9 641 68.3
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 7.6e-254 880.6 636 68.7
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 2.2e-253 879.0 639 67.9
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 2.9e-253 878.6 640 67.7
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 2.9e-253 878.6 674 66.3
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 1.1e-252 876.7 644 68.2
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 2.5e-252 875.5 633 69.0
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 2.5e-252 875.5 639 67.9
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 5.5e-252 874.4 635 68.3
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 7.1e-252 874.0 628 68.9
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 7.1e-252 874.0 639 68.2
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 7.9e-251 870.5 638 68.0
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 1.8e-250 869.4 634 67.8
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 3.0e-250 868.6 639 67.8
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 3.9e-250 868.2 636 70.0
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 8.7e-250 867.1 645 69.0
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 1.1e-249 866.7 649 67.6
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 4.3e-249 864.8 637 67.7
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 1.3e-248 863.2 660 65.6
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 1.8e-247 859.4 645 65.4
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 1.8e-247 859.4 630 66.7
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 2.4e-247 859.0 639 68.4
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 4.1e-247 858.2 642 65.3
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 9.0e-247 857.1 632 67.6
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 4.5e-246 854.7 638 67.7
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 5.5e-244 847.8 662 65.1
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 3.6e-243 845.1 633 66.7
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 2.3e-242 842.4 635 64.6
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 3.0e-242 842.0 653 66.2
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 6.7e-242 840.9 627 66.7
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 1.4e-239 833.2 644 64.3
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 1.4e-239 833.2 644 64.3
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 4.5e-238 828.2 676 62.6
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 3.0e-234 815.5 644 63.4
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 8.5e-229 797.3 637 63.9
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 1.4e-228 796.6 644 63.2
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 1.4e-223 780.0 644 62.4
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 1.7e-221 773.1 633 60.2
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 5.0e-213 745.0 460 80.4
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 1.2e-206 723.8 497 72.2
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 2.0e-201 706.4 595 60.3
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 4.4e-201 705.3 637 58.9
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 8.0e-195 684.5 544 64.9
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 2.7e-190 669.5 619 55.3
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 2.4e-183 646.4 619 54.1
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 9.2e-183 644.4 621 55.9
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 8.6e-173 611.3 364 80.2
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 6.2e-171 605.1 505 61.8
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 5.8e-161 572.0 440 64.3
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 2.5e-156 556.6 337 80.1
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 6.0e-150 535.4 335 77.0
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 5.1e-141 505.8 427 64.4
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 2.2e-136 490.3 462 53.2
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 4.5e-89 333.2 194 85.6
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 1.6e-78 298.1 269 58.0
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 5.6e-71 273.1 183 66.7
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 1.7e-64 251.5 158 81.6
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 3.1e-61 240.7 205 59.5
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 1.0e-56 225.7 170 68.8
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 4.0e-53 213.8 129 78.3
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 4.6e-49 200.3 192 54.2
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 1.3e-48 198.7 127 74.8
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 4.8e-38 163.7 169 54.4
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 7.9e-33 146.4 103 68.9
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 1.6e-30 138.7 73 84.9
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 2.9e-27 127.9 115 56.5
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 1.4e-21 109.0 63 77.8
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 2.2e-19 101.7 77 63.6


User provided reference genes

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