Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G158600 Prunus persica HOM05D001158 ORTHO05D000964 5.3e-37 158.7 85 100.0
MD01G1048900 Malus domestica HOM05D001158 ORTHO05D000964 2.5e-18 96.7 73 71.2
Prupe.2G158700 Prunus persica HOM05D001158 ORTHO05D000964 2.6e-12 76.6 69 60.9
MD01G1048800 Malus domestica HOM05D001158 ORTHO05D000964 4.2e-10 69.3 71 59.2
RcHm_v2.0_Chr1g0353001 Rosa chinensis HOM05D001158 ORTHO05D000964 4.2e-10 69.3 65 53.8
ATR0680G051 Amborella trichopoda HOM05D001158 ORTHO05D000964 2.1e-09 67.0 62 56.5
Dinv38982 Davidia involucrata HOM05D000102 ORTHO05D001041 2.1e-09 67.0 64 59.4
Prupe.2G158500 Prunus persica HOM05D001158 ORTHO05D000964 2.1e-09 67.0 65 56.9
CiPaw.11G138800 Carya illinoinensis HOM05D001158 ORTHO05D000964 2.7e-09 66.6 65 56.9
FAN01G0761 Fragaria x ananassa HOM05D001158 ORTHO05D000964 3.6e-09 66.2 75 56.0
FAN03G3434 Fragaria x ananassa HOM05D001158 ORTHO05D000964 3.6e-09 66.2 75 56.0
FAN06G3873 Fragaria x ananassa HOM05D001158 ORTHO05D000964 3.6e-09 66.2 75 56.0
FAN06G4028 Fragaria x ananassa HOM05D001158 ORTHO05D000964 3.6e-09 66.2 75 56.0
TAR629G2983 Trochodendron aralioides HOM05D001158 ORTHO05D000964 6.1e-09 65.5 63 58.7
FvH4_7g13491 Fragaria vesca HOM05D001158 ORTHO05D000964 7.9e-09 65.1 73 57.5
Potri.002G155600 Populus trichocarpa HOM05D001158 ORTHO05D000964 7.9e-09 65.1 64 59.4
Prupe.2G158800 Prunus persica HOM05D001158 ORTHO05D000964 7.9e-09 65.1 89 46.1
Zm00001eb075700 Zea mays HOM05D001158 ORTHO05D000964 7.9e-09 65.1 40 75.0
Prupe.2G159000 Prunus persica HOM05D001158 ORTHO05D000964 1.0e-08 64.7 89 46.1
ATR0680G245 Amborella trichopoda HOM05D001158 ORTHO05D000964 1.4e-08 64.3 62 53.2
Aqoxy5G03960 Aquilegia oxysepala HOM05D001158 ORTHO05D000964 1.8e-08 63.9 63 55.6
CiPaw.01G056000 Carya illinoinensis HOM05D001158 ORTHO05D000964 1.8e-08 63.9 80 55.0
RcHm_v2.0_Chr1g0353011 Rosa chinensis HOM05D001158 ORTHO05D000964 3.0e-08 63.2 72 56.9
Thecc.03G274700 Theobroma cacao HOM05D001158 ORTHO05D000964 3.0e-08 63.2 65 56.9
SEGI_00426 Sequoiadendron giganteum HOM05D001158 ORTHO05D000964 3.9e-08 62.8 64 56.2
arahy.Tifrunner.gnm1.ann1.53HUJL Arachis hypogaea HOM05D001158 ORTHO05D000964 5.1e-08 62.4 58 60.3
arahy.Tifrunner.gnm1.ann1.LVS803 Arachis hypogaea HOM05D001158 ORTHO05D000964 5.1e-08 62.4 58 60.3
FAN10G0809 Fragaria x ananassa HOM05D001158 ORTHO05D000964 5.1e-08 62.4 59 54.2
Cpa.g.sc18.207 Carica papaya HOM05D001158 ORTHO05D000964 6.7e-08 62.0 63 57.1
Ciclev10024188m.g Citrus clementina HOM05D001158 ORTHO05D000964 6.7e-08 62.0 75 49.3
FvH4_7g13500 Fragaria vesca HOM05D001158 ORTHO05D000964 8.8e-08 61.6 69 49.3
FAN10G2554 Fragaria x ananassa HOM05D001158 ORTHO05D000964 1.1e-07 61.2 63 52.4
Duzib068G0027 Durio zibethinus HOM05D001158 ORTHO05D000964 1.5e-07 60.8 64 54.7
Atru.chr5.435 Acer truncatum HOM05D001158 ORTHO05D000964 2.0e-07 60.5 64 56.2
FvH4_7g13490 Fragaria vesca HOM05D001158 ORTHO05D000964 2.0e-07 60.5 59 52.5
vmacro13322 Vaccinium macrocarpon HOM05D001158 ORTHO05D000964 2.0e-07 60.5 59 54.2
Actinidia38303 Actinidia chinensis HOM05D001158 ORTHO05D000964 2.6e-07 60.1 63 52.4
DCAR_008414 Daucus carota HOM05D001158 ORTHO05D000964 2.6e-07 60.1 64 54.7
Peaxi162Scf00102g01417 Petunia axillaris HOM05D001158 ORTHO05D000964 2.6e-07 60.1 63 50.8
Cfa012134 Carpinus fangiana HOM05D001158 ORTHO05D000964 3.3e-07 59.7 65 53.8
SEGI_17910 Sequoiadendron giganteum HOM05D001158 ORTHO05D000964 3.3e-07 59.7 43 60.5
SEGI_18496 Sequoiadendron giganteum HOM05D001158 ORTHO05D000964 3.3e-07 59.7 43 60.5
Manes.02G025000 Manihot esculenta HOM05D001158 ORTHO05D000964 4.4e-07 59.3 64 54.7
RcHm_v2.0_Chr1g0353061 Rosa chinensis HOM05D001158 ORTHO05D000964 4.4e-07 59.3 41 61.0
Lsat_1_v5_gn_8_135021 Lactuca sativa HOM05D001158 ORTHO05D000964 5.7e-07 58.9 63 52.4
Haze_08913 Corylus avellana HOM05D001158 ORTHO05D000964 7.4e-07 58.5 65 53.8
Haze_08916 Corylus avellana HOM05D001158 ORTHO05D000964 7.4e-07 58.5 65 53.8
Os04g0531100 Oryza sativa ssp. japonica HOM05D001158 ORTHO05D000964 7.4e-07 58.5 63 55.6
QL12p017881 Quercus lobata HOM05D001158 ORTHO05D000964 7.4e-07 58.5 64 51.6
DCAR_006754 Daucus carota HOM05D001158 ORTHO05D000964 9.7e-07 58.2 63 55.6
Duzib205G0316 Durio zibethinus HOM05D001158 ORTHO05D000964 9.7e-07 58.2 64 53.1
Cc08_g14260 Coffea canephora HOM05D001158 ORTHO05D000964 1.3e-06 57.8 63 57.1
RcHm_v2.0_Chr1g0352971 Rosa chinensis HOM05D001158 ORTHO05D000964 1.3e-06 57.8 41 58.5
RcHm_v2.0_Chr1g0353021 Rosa chinensis HOM05D001158 ORTHO05D000964 1.3e-06 57.8 62 46.8
Zm00001eb185780 Zea mays HOM05D001158 ORTHO05D000964 1.3e-06 57.8 40 70.0
Ah.05g176320 Amaranthus hybridus HOM05D001158 ORTHO05D000964 1.7e-06 57.4 63 57.1
Dinv43775 Davidia involucrata HOM05D001158 ORTHO05D000964 1.7e-06 57.4 63 52.4
SEGI_24227 Sequoiadendron giganteum HOM05D001158 ORTHO05D000964 1.7e-06 57.4 40 60.0
GSVIVG01019850001 Vitis vinifera HOM05D001158 ORTHO05D000964 1.7e-06 57.4 64 53.1
Actinidia27526 Actinidia chinensis HOM05D001158 ORTHO05D000964 2.2e-06 57.0 63 50.8
Eucgr.E00562 Eucalyptus grandis HOM05D001158 ORTHO05D000964 2.2e-06 57.0 63 57.1
MD01G1049000 Malus domestica HOM05D001158 ORTHO05D000964 2.2e-06 57.0 60 53.3
Sabra02G0123400 Salix brachista HOM05D001158 ORTHO05D000964 2.2e-06 57.0 64 54.7
SEGI_24006 Sequoiadendron giganteum HOM05D001158 ORTHO05D000964 2.2e-06 57.0 43 58.1
Atru.chr8.370 Acer truncatum HOM05D001158 ORTHO05D000964 2.8e-06 56.6 64 54.7
FvH4_7g13480 Fragaria vesca HOM05D001158 ORTHO05D000964 2.8e-06 56.6 41 58.5
MBI17_g21050_MAGBIO Magnolia biondii HOM05D001158 ORTHO05D000964 2.8e-06 56.6 50 56.0
Nn1g01415 Nelumbo nucifera HOM05D001158 ORTHO05D000964 2.8e-06 56.6 63 52.4
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 2.8e-06 56.6 39 64.1
Lalb_Chr05g0224981 Lupinus albus HOM05D001158 ORTHO05D000964 3.7e-06 56.2 64 54.7
AUR62004307 Chenopodium quinoa HOM05D001158 ORTHO05D000964 4.8e-06 55.8 64 54.7
HPP92_028125 Vanilla planifolia HOM05D001158 ORTHO05D000964 4.8e-06 55.8 56 58.9
Ciclev10022928m.g Citrus clementina HOM05D001158 ORTHO05D000964 6.3e-06 55.5 46 58.7
Glyma.08G011900 Glycine max HOM05D001158 ORTHO05D000964 6.3e-06 55.5 65 46.2
Gohir.A11G021600 Gossypium hirsutum HOM05D001158 ORTHO05D000964 6.3e-06 55.5 64 56.2
Os02g0640000 Oryza sativa ssp. japonica HOM05D001158 ORTHO05D000964 6.3e-06 55.5 57 56.1
Sed0020915 Sechium edule HOM05D001158 ORTHO05D000964 6.3e-06 55.5 64 53.1
TWI60G1600 Tripterygium wilfordii HOM05D001158 ORTHO05D000964 6.3e-06 55.5 63 52.4


User provided reference genes

Program Settings