Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G154400 Prunus persica HOM05D003432 ORTHO05D336120 2.6e-62 241.9 125 100.0
Prupe.2G159500 Prunus persica HOM05D003432 ORTHO05D009553 1.9e-15 86.3 72 62.5
RcHm_v2.0_Chr1g0353101 Rosa chinensis HOM05D003432 ORTHO05D009553 5.4e-15 84.7 80 58.8
FAN10G2212 Fragaria x ananassa HOM05D003432 ORTHO05D009553 1.2e-14 83.6 71 63.4
FAN03G0726 Fragaria x ananassa HOM05D003432 ORTHO05D009553 1.6e-14 83.2 71 63.4
FAN10G1796 Fragaria x ananassa HOM05D003432 ORTHO05D009553 2.1e-14 82.8 72 61.1
FvH4_7g13540 Fragaria vesca HOM05D003432 ORTHO05D009553 2.7e-14 82.4 72 61.1
FAN06G2249 Fragaria x ananassa HOM05D003432 ORTHO05D009553 2.7e-14 82.4 72 61.1
FAN06G3453 Fragaria x ananassa HOM05D003432 ORTHO05D009553 2.7e-14 82.4 72 61.1
FAN01G0987 Fragaria x ananassa HOM05D003432 ORTHO05D009553 6.0e-14 81.3 72 61.1
Glyma.18G229000 Glycine max HOM05D003432 ORTHO05D009553 6.0e-14 81.3 70 62.9
CiPaw.02G027500 Carya illinoinensis HOM05D003432 ORTHO05D009553 7.8e-14 80.9 71 60.6
MD01G1048500 Malus domestica HOM05D003432 ORTHO05D009553 7.8e-14 80.9 72 61.1
Sabra02G0123800 Salix brachista HOM05D003432 ORTHO05D009553 7.8e-14 80.9 93 51.6
Phvul.008G069000 Phaseolus vulgaris HOM05D003432 ORTHO05D009553 1.0e-13 80.5 72 61.1
Glyma.09G263200 Glycine max HOM05D003432 ORTHO05D009553 1.3e-13 80.1 72 59.7
Lj1g0020563 Lotus japonicus HOM05D003432 ORTHO05D009553 1.3e-13 80.1 72 56.9
Duzib268G1484 Durio zibethinus HOM05D003432 ORTHO05D009553 1.7e-13 79.7 72 56.9
Hma1.2p1_0001F.1_g001730 Hydrangea macrophylla HOM05D003432 ORTHO05D009553 1.7e-13 79.7 71 60.6
CANSAT56G1745 Cannabis sativa HOM05D003432 ORTHO05D009553 2.3e-13 79.3 71 59.2
Cc02_g37450 Coffea canephora HOM05D003432 ORTHO05D009553 2.3e-13 79.3 72 55.6
QL08p049983 Quercus lobata HOM05D003432 ORTHO05D009553 2.3e-13 79.3 72 58.3
TAR629G1659 Trochodendron aralioides HOM05D003432 ORTHO05D009553 2.3e-13 79.3 67 62.7
Rhsim07G0019000 Rhododendron simsii HOM05D003432 ORTHO05D009553 3.0e-13 79.0 67 62.7
Sed0022298 Sechium edule HOM05D003432 ORTHO05D009553 3.0e-13 79.0 65 63.1
VMungo1383G0671 Vigna mungo HOM05D003432 ORTHO05D009553 3.0e-13 79.0 73 58.9
VMungo1383G3405 Vigna mungo HOM05D003432 ORTHO05D009553 3.0e-13 79.0 73 58.9
Sc02g0002140 Simmondsia chinensis HOM05D003432 ORTHO05D009553 3.9e-13 78.6 72 56.9
MSTRG.4870 Avicennia marina HOM05D003432 ORTHO05D009553 5.1e-13 78.2 71 59.2
CSS0000636 Camellia sinensis var. sinensis HOM05D003432 ORTHO05D009553 5.1e-13 78.2 72 58.3
Haze_15199 Corylus avellana HOM05D003432 ORTHO05D009553 5.1e-13 78.2 71 57.7
Eucgr.E00188 Eucalyptus grandis HOM05D003432 ORTHO05D009553 5.1e-13 78.2 71 59.2
TWI59G0087 Tripterygium wilfordii HOM05D003432 ORTHO05D009553 5.1e-13 78.2 72 56.9
COL.COLO4_12600 Corchorus olitorius HOM05D003432 ORTHO05D009553 6.6e-13 77.8 71 57.7
Dinv43778 Davidia involucrata HOM05D003432 ORTHO05D009553 6.6e-13 77.8 71 59.2
Oeu056346.1 Olea europaea HOM05D003432 ORTHO05D009553 6.6e-13 77.8 70 58.6
PGR042G2329 Punica granatum HOM05D003432 ORTHO05D009553 6.6e-13 77.8 67 64.2
Cfa004211 Carpinus fangiana HOM05D003432 ORTHO05D009553 8.6e-13 77.4 71 57.7
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 8.6e-13 77.4 71 53.5
TPR.G17601 Trifolium pratense HOM05D003432 ORTHO05D009553 1.1e-12 77.0 122 42.6
Ca_07881_v3 Cicer arietinum L. HOM05D003432 ORTHO05D009553 1.5e-12 76.6 72 55.6
Glyma.19G039400 Glycine max HOM05D003432 ORTHO05D009553 1.5e-12 76.6 61 63.9
Lalb_Chr01g0021091 Lupinus albus HOM05D003432 ORTHO05D009553 1.5e-12 76.6 72 56.9
Potri.014G079500 Populus trichocarpa HOM05D003432 ORTHO05D009553 1.5e-12 76.6 71 56.3
vmacro13320 Vaccinium macrocarpon HOM05D003432 ORTHO05D009553 1.5e-12 76.6 82 51.2
Duzib138G1165 Durio zibethinus HOM05D003432 ORTHO05D009553 1.9e-12 76.3 72 56.9
Psat3g111800 Pisum sativum HOM05D003432 ORTHO05D009553 1.9e-12 76.3 70 58.6
Potri.002G155700 Populus trichocarpa HOM05D003432 ORTHO05D009553 1.9e-12 76.3 71 57.7
Atru.chr5.440 Acer truncatum HOM05D003432 ORTHO05D009553 3.3e-12 75.5 72 55.6
Gohir.A11G086700 Gossypium hirsutum HOM05D003432 ORTHO05D009553 3.3e-12 75.5 61 62.3
Nitab4.5_0006669g0010 Nicotiana tabacum HOM05D003432 ORTHO05D009553 3.3e-12 75.5 67 56.7
GSVIVG01026819001 Vitis vinifera HOM05D003432 ORTHO05D009553 3.3e-12 75.5 67 58.2
Migut.B01709 Erythranthe guttata HOM05D003432 ORTHO05D009553 4.3e-12 75.1 73 54.8
Gohir.D11G090900 Gossypium hirsutum HOM05D003432 ORTHO05D009553 4.3e-12 75.1 72 54.2
Gorai.007G096900 Gossypium raimondii HOM05D003432 ORTHO05D009553 4.3e-12 75.1 72 54.2
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 4.3e-12 75.1 71 52.1
Manes.01G260500 Manihot esculenta HOM05D003432 ORTHO05D009553 7.3e-12 74.3 71 54.9
Medtr7g076600 Medicago truncatula HOM05D003432 ORTHO05D009553 7.3e-12 74.3 72 52.8
MELO3C022534.2 Cucumis melo HOM05D003432 ORTHO05D009553 9.5e-12 73.9 70 57.1
CsaV3_6G005770 Cucumis sativus L. HOM05D003432 ORTHO05D009553 9.5e-12 73.9 70 57.1
MBI18_g45104_MAGBIO Magnolia biondii HOM05D003432 ORTHO05D009553 9.5e-12 73.9 63 60.3
arahy.Tifrunner.gnm1.ann1.AIRX6Z Arachis hypogaea HOM05D003432 ORTHO05D009553 1.6e-11 73.2 72 54.2
arahy.Tifrunner.gnm1.ann1.YEH8SC Arachis hypogaea HOM05D003432 ORTHO05D009553 1.6e-11 73.2 72 54.2
PSO478G4595 Papaver somniferum HOM05D003432 ORTHO05D009553 1.6e-11 73.2 65 55.4
Thecc.01G365400 Theobroma cacao HOM05D003432 ORTHO05D009553 2.1e-11 72.8 71 54.9
Ah.05g176340 Amaranthus hybridus HOM05D003432 ORTHO05D009553 2.8e-11 72.4 67 56.7
Lj9A579T29 Lonicera japonica HOM05D003432 ORTHO05D009553 3.6e-11 72.0 61 60.7
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 3.6e-11 72.0 72 48.6
Nn1g01421 Nelumbo nucifera HOM05D003432 ORTHO05D009553 4.7e-11 71.6 67 56.7
Ciclev10021526m.g Citrus clementina HOM05D003432 ORTHO05D009553 6.2e-11 71.2 70 54.3
Actinidia38307 Actinidia chinensis HOM05D003432 ORTHO05D009553 8.1e-11 70.9 70 55.7
Oeu053293.1 Olea europaea HOM05D003432 ORTHO05D009553 8.1e-11 70.9 65 56.9
Peaxi162Scf00397g00522 Petunia axillaris HOM05D003432 ORTHO05D009553 8.1e-11 70.9 67 55.2
AUR62022760 Chenopodium quinoa HOM05D003432 ORTHO05D009553 1.1e-10 70.5 73 52.1
Nitab4.5_0001251g0050 Nicotiana tabacum HOM05D003432 ORTHO05D009553 1.1e-10 70.5 67 55.2
PSO782G0809 Papaver somniferum HOM05D003432 ORTHO05D009553 1.1e-10 70.5 65 53.8
PSO782G1297 Papaver somniferum HOM05D003432 ORTHO05D009553 1.1e-10 70.5 65 53.8
PSO782G4791 Papaver somniferum HOM05D003432 ORTHO05D009553 1.1e-10 70.5 65 53.8
AUR62004309 Chenopodium quinoa HOM05D003432 ORTHO05D009553 1.4e-10 70.1 70 52.9
ATR0680G243 Amborella trichopoda HOM05D003432 ORTHO05D009553 1.8e-10 69.7 71 49.3
CAN.G78.16 Capsicum annuum HOM05D003432 ORTHO05D009553 1.8e-10 69.7 67 52.2
CDE05G1977 Ceratophyllum demersum HOM05D003432 ORTHO05D009553 1.8e-10 69.7 67 55.2
Sopen01g037980 Solanum pennellii HOM05D003432 ORTHO05D009553 2.3e-10 69.3 67 55.2
PGSC0003DMG401000019 Solanum tuberosum HOM05D003432 ORTHO05D009553 2.3e-10 69.3 67 55.2
EL10Ac1g00520 Beta vulgaris HOM05D003432 ORTHO05D009553 3.1e-10 68.9 73 49.3
HanXRQChr04g0121681 Helianthus annuus HOM05D003432 ORTHO05D009553 3.1e-10 68.9 73 46.6
unitig_22.g6807 Utricularia gibba HOM05D003432 ORTHO05D009553 3.1e-10 68.9 72 48.6
Solyc01g094180.4 Solanum lycopersicum HOM05D003432 ORTHO05D009553 1.5e-09 66.6 67 52.2
Zm00001eb185770 Zea mays HOM05D003432 ORTHO05D009553 1.5e-09 66.6 66 51.5
Cpa.g.sc37.45 Carica papaya HOM05D003432 ORTHO05D009553 5.8e-09 64.7 71 47.9
Duzib133G1383 Durio zibethinus HOM05D003432 ORTHO05D009553 9.9e-09 63.9 137 35.8
ECA236G2211 Erigeron canadensis HOM05D003432 ORTHO05D009553 9.9e-09 63.9 67 49.3
Lsat_1_v5_gn_7_5341 Lactuca sativa HOM05D003432 ORTHO05D009553 1.3e-08 63.5 64 51.6
SHI06917 Sapria himalayana HOM05D003432 ORTHO05D009553 1.3e-08 63.5 69 50.7
Hund27310 Selenicereus undatus HOM05D003432 ORTHO05D009553 1.7e-08 63.2 61 50.8
CSS0026588 Camellia sinensis var. sinensis HOM05D003432 ORTHO05D009553 3.7e-08 62.0 61 55.7
Os02g0640200 Oryza sativa ssp. japonica HOM05D003432 ORTHO05D009553 2.4e-07 59.3 64 46.9
SEGI_12179 Sequoiadendron giganteum HOM05D003432 ORTHO05D009553 3.2e-07 58.9 110 34.5


User provided reference genes

Program Settings