Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 7.0e-165 583.9 310 100.0
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 2.3e-152 542.3 310 91.6
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 6.4e-150 534.3 310 90.0
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 3.3e-138 495.4 310 82.9
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 1.2e-137 493.4 310 82.6
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 2.1e-137 492.7 310 83.2
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 1.4e-136 490.0 310 82.9
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.8e-136 489.6 310 82.9
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 5.2e-136 488.0 312 80.8
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.2e-135 486.9 310 82.3
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.0e-135 486.1 309 82.2
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 3.4e-135 485.3 309 81.2
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.3e-134 483.4 310 82.3
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 2.9e-134 482.3 310 81.6
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 4.9e-134 481.5 310 81.0
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 4.9e-134 481.5 310 81.3
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 2.4e-133 479.2 310 81.6
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 7.1e-133 477.6 310 78.7
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.1e-132 476.1 310 79.0
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 7.8e-132 474.2 310 77.7
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 1.0e-131 473.8 310 80.3
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 1.3e-131 473.4 310 79.7
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 1.7e-131 473.0 310 79.0
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 2.3e-131 472.6 310 79.7
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 2.3e-131 472.6 310 78.1
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 3.0e-131 472.2 310 78.7
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 3.9e-131 471.9 310 80.0
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 8.7e-131 470.7 345 74.2
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 8.7e-131 470.7 310 78.1
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 8.7e-131 470.7 310 79.0
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.5e-130 469.9 318 77.0
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.9e-130 469.5 317 76.7
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.9e-130 469.5 317 76.7
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 1.9e-130 469.5 310 78.7
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 2.5e-130 469.2 310 78.7
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 5.6e-130 468.0 318 76.7
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 1.3e-129 466.8 310 79.0
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 2.8e-129 465.7 310 78.1
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 2.8e-129 465.7 310 77.4
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 6.2e-129 464.5 310 77.7
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 8.1e-129 464.2 310 77.4
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 1.8e-128 463.0 310 77.7
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 2.4e-128 462.6 310 78.7
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 2.4e-128 462.6 311 78.8
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 1.5e-127 459.9 310 75.8
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.0e-127 459.5 318 74.5
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 2.2e-126 456.1 318 74.8
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 2.2e-126 456.1 310 76.8
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 3.8e-126 455.3 318 76.1
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 8.4e-126 454.1 362 67.7
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 1.1e-125 453.8 310 76.1
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 1.4e-125 453.4 318 77.0
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 1.9e-125 453.0 319 75.2
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 2.4e-125 452.6 318 76.4
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 3.2e-125 452.2 318 74.5
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 7.1e-125 451.1 310 76.5
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 7.1e-125 451.1 310 76.1
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.2e-124 450.3 318 74.8
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.6e-124 449.9 318 74.8
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 2.7e-124 449.1 318 74.5
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.7e-124 449.1 319 74.6
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 3.9e-123 445.3 310 74.5
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 3.9e-123 445.3 311 74.3
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 6.7e-123 444.5 319 73.7
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.9e-122 443.0 319 73.4
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 2.5e-122 442.6 310 75.2
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 5.6e-122 441.4 318 72.6
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 7.4e-122 441.0 319 73.4
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 1.6e-121 439.9 310 74.5
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 2.1e-121 439.5 318 72.6
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 4.8e-121 438.3 311 74.9
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 4.8e-121 438.3 310 74.2
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 6.2e-121 438.0 318 72.0
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.1e-120 437.2 310 72.3
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.4e-120 436.8 310 72.3
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.8e-120 436.4 318 71.7
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.2e-119 433.7 310 72.9
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 2.6e-119 432.6 311 74.0
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 2.9e-118 429.1 318 71.4
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 3.8e-118 428.7 310 72.6
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 3.8e-118 428.7 311 71.4
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 8.4e-118 427.6 311 73.6
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 8.4e-118 427.6 310 74.2
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 1.1e-117 427.2 307 72.6
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 7.1e-117 424.5 285 77.9
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 4.6e-116 421.8 312 71.5
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 4.6e-116 421.8 312 72.1
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 7.9e-116 421.0 278 80.2
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.0e-115 420.6 312 71.5
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 2.3e-115 419.5 311 70.7
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 3.9e-115 418.7 312 71.8
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 5.1e-115 418.3 311 69.8
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 4.8e-113 411.8 298 73.2
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.1e-112 410.6 319 71.2
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.8e-112 409.8 294 74.5
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 5.3e-112 408.3 295 73.9
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 2.0e-111 406.4 294 73.5
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 7.6e-111 404.4 295 73.6
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.0e-110 404.1 256 83.2
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 3.8e-110 402.1 316 67.1
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 1.4e-109 400.2 262 80.5
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.5e-109 399.4 315 67.3
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 7.1e-109 397.9 315 67.3
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.2e-108 397.1 310 68.1
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 2.3e-107 392.9 321 65.1
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 5.1e-107 391.7 281 73.7
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 5.7e-106 388.3 283 73.1
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 1.3e-105 387.1 283 72.4
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 5.3e-104 381.7 262 75.2
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 6.9e-104 381.3 312 65.4
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 2.6e-103 379.4 276 72.5
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 6.5e-102 374.8 310 64.2
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 1.9e-101 373.2 310 66.1
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 3.0e-99 365.9 262 70.2
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 3.7e-97 359.0 256 74.6
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.1e-93 347.4 310 63.2
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 3.6e-92 342.4 315 60.3
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.5e-90 337.0 314 58.6
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 4.4e-90 335.5 221 77.4
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.1e-88 329.3 310 59.0
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 2.9e-86 322.8 242 71.1
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.2e-85 318.9 230 72.6
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 2.3e-83 313.2 310 57.4
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 4.1e-80 302.4 740 33.2
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.0e-70 271.2 391 46.8
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 1.5e-69 267.3 314 47.8
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 3.2e-69 266.2 317 47.9
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 9.8e-66 254.6 312 50.3
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 2.1e-60 236.9 290 49.7
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 8.9e-59 231.5 178 72.5
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 3.5e-55 219.5 185 66.5
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.6e-52 209.5 154 77.9
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 3.2e-48 196.4 250 52.8
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 8.6e-46 188.3 157 68.8
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 3.1e-43 179.9 143 69.9
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 4.0e-43 179.5 121 81.0
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 4.0e-43 179.5 244 47.1
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 4.4e-42 176.0 120 79.2
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 6.2e-36 155.6 250 47.2
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.1e-35 154.8 121 63.6
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 8.3e-33 145.2 310 33.2
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.3e-30 137.9 91 78.0
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.6e-28 131.0 110 62.7
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 2.1e-28 130.6 128 64.8
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.2e-26 124.8 163 50.3
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 6.4e-25 119.0 93 65.6
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 4.1e-24 116.3 100 59.0
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.5e-23 113.2 106 64.2
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 3.3e-21 106.7 89 59.6
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 7.8e-15 85.5 58 67.2
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 3.9e-14 83.2 62 69.4
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 5.6e-13 79.3 352 26.7
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.1e-11 75.1 88 48.9
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 1.1e-08 65.1 127 35.4
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 3.0e-06 57.0 32 71.9
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 8.7e-06 55.5 90 40.0


User provided reference genes

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