Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 0.0e+00 1332.0 777 100.0
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 0.0e+00 1088.6 787 83.6
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 3.3e-256 888.6 785 70.1
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 9.4e-243 844.0 785 65.2
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 4.7e-242 841.6 796 68.1
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.0e-240 836.3 785 65.1
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.6e-240 835.9 785 65.1
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 4.4e-240 835.1 785 65.1
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.0e-237 826.2 748 65.1
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 7.7e-237 824.3 817 60.8
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 4.7e-234 815.1 818 63.7
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 9.2e-230 800.8 790 60.8
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 1.7e-228 796.6 771 62.8
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 1.3e-220 770.4 752 59.7
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 2.3e-220 769.6 775 63.7
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 6.6e-220 768.1 791 58.9
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 7.3e-219 764.6 766 62.5
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 1.4e-217 760.4 737 68.2
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 2.3e-217 759.6 771 61.3
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 8.9e-217 757.7 793 57.9
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.4e-214 750.4 795 59.2
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 4.6e-213 745.3 775 62.1
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.7e-212 743.4 769 63.3
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 3.6e-210 735.7 776 63.8
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 3.6e-210 735.7 776 63.8
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 5.2e-209 731.9 765 63.1
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 1.2e-208 730.7 783 57.3
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 1.7e-207 726.9 765 57.1
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 3.7e-207 725.7 765 57.4
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 4.9e-207 725.3 778 58.2
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 6.4e-207 724.9 788 57.5
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 5.4e-206 721.8 767 62.8
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-204 717.2 756 62.7
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 4.4e-200 702.2 774 57.1
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 7.6e-200 701.4 776 61.9
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 2.9e-199 699.5 754 62.1
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 4.2e-198 695.7 785 60.9
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 3.0e-196 689.5 776 56.3
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 3.0e-196 689.5 748 59.8
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 8.7e-196 688.0 808 57.4
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 4.3e-195 685.6 793 55.6
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 2.1e-194 683.3 714 64.1
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 5.8e-192 675.2 806 53.6
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 1.1e-190 671.0 795 54.1
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 1.9e-190 670.2 787 54.0
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 4.2e-190 669.1 772 60.2
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 4.2e-190 669.1 785 60.0
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 9.3e-190 667.9 657 61.5
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.0e-188 664.5 793 54.5
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.0e-188 664.5 751 55.7
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 1.0e-188 664.5 817 52.8
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 1.7e-188 663.7 795 56.4
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 1.5e-187 660.6 771 54.9
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.3e-187 659.1 771 60.2
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 6.2e-186 655.2 840 53.0
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 2.4e-185 653.3 770 58.4
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 1.7e-183 647.1 775 58.2
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 3.8e-183 646.0 815 54.0
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 1.9e-182 643.7 782 54.1
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 5.4e-182 642.1 766 58.2
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 7.1e-182 641.7 755 54.2
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 6.0e-181 638.6 776 54.1
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 1.0e-180 637.9 788 53.2
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 6.7e-180 635.2 781 51.3
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 8.7e-180 634.8 773 52.4
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 1.5e-179 634.0 878 48.5
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 4.8e-178 629.0 742 56.5
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.1e-177 627.9 772 52.8
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 4.5e-176 622.5 795 50.8
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 5.8e-176 622.1 753 56.3
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 4.9e-175 619.0 765 52.7
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 6.5e-175 618.6 775 52.3
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 1.4e-174 617.5 775 56.6
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 1.8e-172 610.5 793 51.2
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 5.3e-169 599.0 761 56.5
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 7.6e-168 595.1 737 58.8
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 1.8e-164 583.9 752 50.0
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 6.7e-164 582.0 854 52.7
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.5e-163 580.9 736 51.5
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 9.7e-163 578.2 804 55.3
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 1.1e-161 574.7 801 48.9
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 1.8e-161 573.9 786 55.0
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 1.5e-160 570.9 851 46.9
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 1.3e-159 567.8 791 51.2
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 1.3e-159 567.8 782 52.9
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 1.4e-158 564.3 790 50.5
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 5.5e-158 562.4 783 52.5
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 1.2e-157 561.2 798 49.7
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.2e-157 561.2 756 50.3
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 2.1e-157 560.5 785 52.1
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 6.1e-157 558.9 783 52.2
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 5.1e-156 555.8 805 48.8
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 4.3e-155 552.7 798 50.5
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 4.8e-154 549.3 795 50.8
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 1.8e-153 547.4 800 50.0
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.4e-150 537.7 788 47.7
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 3.2e-150 536.6 735 54.8
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 3.2e-150 536.6 773 46.7
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 8.8e-148 528.5 793 47.0
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 2.2e-146 523.9 770 52.6
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 4.8e-146 522.7 742 50.4
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 1.5e-144 517.7 788 47.8
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 1.1e-142 511.5 746 46.4
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 4.5e-136 489.6 745 47.0
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.0e-131 474.2 792 48.6
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 1.7e-127 461.1 765 43.5
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 2.0e-123 447.6 787 43.3
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 4.3e-118 429.9 340 69.1
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 2.0e-115 421.0 752 44.5
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 1.0e-108 398.7 767 40.3
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 3.5e-104 383.6 792 42.6
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 4.9e-98 363.2 745 42.8
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 3.2e-97 360.5 664 44.0
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 4.7e-93 346.7 391 58.1
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 2.2e-90 337.8 336 55.1
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 1.6e-88 331.6 406 53.2
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 3.3e-86 323.9 402 54.5
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-85 322.0 531 43.3
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 2.4e-81 307.8 757 39.1
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.1e-76 290.8 419 46.3
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 2.9e-74 284.3 582 38.1
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 3.2e-65 254.2 672 39.6
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 2.1e-61 241.5 338 46.4
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 3.9e-55 220.7 215 61.4
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 2.3e-47 194.9 427 45.4
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 5.0e-42 177.2 145 60.7
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.1e-38 166.0 127 64.6
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 7.4e-38 163.3 451 39.9
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 2.0e-35 155.2 625 32.6
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.4e-33 149.1 161 59.0
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 9.7e-30 136.3 497 38.6
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 9.7e-30 136.3 200 43.0
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.7e-29 135.6 248 44.8
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 3.1e-28 131.3 500 37.6
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 1.3e-26 125.9 293 44.0
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 4.2e-25 120.9 171 48.0
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 9.4e-25 119.8 516 34.1
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-23 115.5 516 30.4
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 9.7e-22 109.8 501 29.1
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 2.2e-18 98.6 379 31.1
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 5.0e-18 97.4 165 44.8
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 7.5e-14 83.6 120 42.5
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 3.7e-13 81.3 65 69.2
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 2.0e-11 75.5 46 78.3
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.3e-10 72.8 55 63.6
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 3.8e-10 71.2 57 59.6
arahy.Tifrunner.gnm1.ann1.YQ72RL Arachis hypogaea HOM05D004001 ORTHO05D004559 5.0e-10 70.9 176 34.7
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 5.0e-10 70.9 56 60.7
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 5.5e-09 67.4 75 48.0
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 7.2e-09 67.0 98 41.8
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 9.5e-09 66.6 49 61.2
arahy.Tifrunner.gnm1.ann1.Y88425 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.1e-08 65.5 50 62.0
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 5.2e-07 60.8 51 52.9
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 5.2e-07 60.8 51 52.9
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.7e-06 57.4 53 52.8
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 7.5e-06 57.0 43 72.1


User provided reference genes

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