Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 1.2e-50 203.0 106 100.0
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 5.4e-32 141.0 108 77.8
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 8.6e-30 133.7 99 75.8
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 5.6e-29 131.0 106 71.7
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.0e-27 126.7 99 72.7
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.0e-27 126.7 99 71.7
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.0e-27 126.7 99 72.7
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.0e-27 126.7 99 72.7
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.2e-27 124.4 99 71.7
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.8e-26 120.9 99 71.7
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.2e-20 103.2 101 62.4
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 8.1e-20 100.5 98 57.1
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 1.1e-19 100.1 98 57.1
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.3e-19 99.0 104 57.7
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 6.8e-19 97.4 98 62.2
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.1e-16 88.2 101 60.4
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 2.7e-15 85.5 104 51.9
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.0e-14 83.6 109 52.3
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 1.7e-14 82.8 105 53.3
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 3.0e-14 82.0 114 47.4
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.1e-14 81.3 88 59.1
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 8.6e-14 80.5 99 55.6
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.1e-13 80.1 107 52.3
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.1e-13 80.1 108 50.0
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.1e-13 80.1 104 48.1
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.9e-13 79.3 103 49.5
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 2.5e-13 79.0 99 46.5
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 3.3e-13 78.6 86 58.1
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.3e-13 78.2 101 51.5
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 5.6e-13 77.8 103 47.6
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 5.6e-13 77.8 106 50.9
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 9.5e-13 77.0 88 56.8
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.2e-12 76.6 86 57.0
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.6e-12 76.3 106 47.2
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 2.1e-12 75.9 102 47.1
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.1e-12 75.9 99 49.5
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 3.6e-12 75.1 100 48.0
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 8.1e-12 73.9 102 48.0
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-11 73.6 102 48.0
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 1.1e-11 73.6 102 48.0
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.1e-11 73.6 102 48.0
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.4e-11 73.2 104 51.0
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.8e-11 72.8 102 48.0
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.8e-11 72.8 101 46.5
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 2.3e-11 72.4 102 47.1
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 2.3e-11 72.4 102 47.1
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 2.3e-11 72.4 101 46.5
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 2.3e-11 72.4 99 47.5
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 3.1e-11 72.0 103 47.6
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 3.1e-11 72.0 101 46.5
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 4.0e-11 71.6 102 49.0
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 5.2e-11 71.2 102 50.0
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 8.9e-11 70.5 86 54.7
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 8.9e-11 70.5 104 44.2
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 1.2e-10 70.1 99 42.4
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.2e-10 70.1 100 48.0
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.2e-10 70.1 102 47.1
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.2e-10 70.1 99 45.5
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 1.5e-10 69.7 100 47.0
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.5e-10 69.7 101 43.6
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 2.0e-10 69.3 102 47.1
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.0e-10 69.3 100 49.0
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 2.6e-10 68.9 101 44.6
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 2.6e-10 68.9 99 45.5
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 5.8e-10 67.8 87 51.7
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 5.8e-10 67.8 100 46.0
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 5.8e-10 67.8 101 43.6
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 5.8e-10 67.8 101 42.6
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 7.6e-10 67.4 99 43.4
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 7.6e-10 67.4 100 48.0
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 7.6e-10 67.4 99 45.5
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 7.6e-10 67.4 104 44.2
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 9.9e-10 67.0 99 45.5
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 2.2e-09 65.9 99 43.4
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 2.2e-09 65.9 103 44.7
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 2.2e-09 65.9 91 50.5
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 2.9e-09 65.5 79 53.2
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 2.9e-09 65.5 100 48.0
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.9e-09 65.5 101 46.5
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 2.9e-09 65.5 99 42.4
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 3.8e-09 65.1 101 45.5
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 3.8e-09 65.1 102 45.1
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 4.9e-09 64.7 72 52.8
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 4.9e-09 64.7 99 42.4
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 6.4e-09 64.3 99 44.4
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 6.4e-09 64.3 102 45.1
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 6.4e-09 64.3 102 45.1
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 6.4e-09 64.3 95 46.3
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 6.4e-09 64.3 49 71.4
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.1e-08 63.5 99 42.4
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-08 63.5 108 46.3
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.1e-08 63.5 95 46.3
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-08 63.5 99 45.5
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 1.1e-08 63.5 99 44.4
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.1e-08 63.5 77 49.4
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 1.4e-08 63.2 102 46.1
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 1.4e-08 63.2 102 46.1
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.4e-08 63.2 99 48.5
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 1.9e-08 62.8 102 45.1
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 1.9e-08 62.8 102 44.1
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 1.9e-08 62.8 106 43.4
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.9e-08 62.8 100 44.0
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 2.4e-08 62.4 48 68.8
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.4e-08 62.4 99 44.4
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 2.4e-08 62.4 81 51.9
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.4e-08 62.4 99 45.5
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.4e-08 62.4 99 45.5
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 2.4e-08 62.4 104 47.1
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 2.4e-08 62.4 81 48.1
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 2.4e-08 62.4 100 52.0
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 3.2e-08 62.0 102 45.1
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 3.2e-08 62.0 100 47.0
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 3.2e-08 62.0 99 42.4
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 3.2e-08 62.0 108 43.5
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.2e-08 62.0 43 74.4
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 3.2e-08 62.0 104 42.3
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 4.1e-08 61.6 102 41.2
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 4.1e-08 61.6 102 41.2
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 4.1e-08 61.6 102 41.2
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 4.1e-08 61.6 100 46.0
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 4.1e-08 61.6 79 49.4
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 4.1e-08 61.6 99 45.5
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 7.1e-08 60.8 99 44.4
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 7.1e-08 60.8 99 43.4
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 7.1e-08 60.8 99 42.4
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 9.2e-08 60.5 99 42.4
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 1.2e-07 60.1 111 43.2
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.2e-07 60.1 77 49.4
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 1.6e-07 59.7 87 44.8
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 2.1e-07 59.3 100 42.0
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.7e-07 58.9 77 48.1
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 2.7e-07 58.9 99 42.4
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.5e-07 58.5 46 67.4
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 3.5e-07 58.5 100 42.0
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 4.6e-07 58.2 64 51.6
Gorai.007G092100 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.6e-07 58.2 88 46.6
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 6.0e-07 57.8 45 71.1
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 6.0e-07 57.8 79 48.1
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 6.0e-07 57.8 69 49.3
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 6.0e-07 57.8 89 41.6
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 7.8e-07 57.4 49 61.2
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 7.8e-07 57.4 89 49.4
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 1.0e-06 57.0 109 42.2
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 1.0e-06 57.0 99 41.4
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 1.3e-06 56.6 112 39.3
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 1.3e-06 56.6 97 44.3
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 1.7e-06 56.2 104 38.5
C06p26960 Brassica napus HOM05D003683 ORTHO05D004143 1.7e-06 56.2 108 39.8
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 1.7e-06 56.2 44 65.9
BolC6t37870H Brassica oleracea HOM05D003683 ORTHO05D004143 1.7e-06 56.2 109 39.4
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 1.7e-06 56.2 44 65.9
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.7e-06 56.2 99 38.4
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 1.7e-06 56.2 59 54.2
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 2.3e-06 55.8 105 41.0
FAN05G2543 Fragaria x ananassa HOM05D003360 ORTHO05D003759 2.3e-06 55.8 62 51.6
FAN09G1364 Fragaria x ananassa HOM05D003360 ORTHO05D003759 2.3e-06 55.8 62 51.6
Sed0002184 Sechium edule HOM05D003683 ORTHO05D004143 2.3e-06 55.8 73 49.3
BcaC08g45090 Brassica carinata HOM05D003683 ORTHO05D004143 3.0e-06 55.5 99 39.4
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 3.0e-06 55.5 99 38.4
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 3.0e-06 55.5 99 40.4
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 3.9e-06 55.1 108 40.7
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 3.9e-06 55.1 108 39.8
Lsat_1_v5_gn_6_24141 Lactuca sativa HOM05D003360 ORTHO05D003759 3.9e-06 55.1 46 67.4
PGR031G2056 Punica granatum HOM05D003683 ORTHO05D004143 3.9e-06 55.1 103 43.7
FAN02G1444 Fragaria x ananassa HOM05D003360 ORTHO05D003759 5.1e-06 54.7 62 51.6
BcaC08g45089 Brassica carinata HOM05D003683 ORTHO05D004143 6.6e-06 54.3 108 38.0
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 8.6e-06 53.9 105 40.0
Lsat_1_v5_gn_2_24580 Lactuca sativa HOM05D003360 ORTHO05D003759 8.6e-06 53.9 51 60.8
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 8.6e-06 53.9 99 45.5
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 8.6e-06 53.9 46 63.0


User provided reference genes

Program Settings