Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 9.5e-124 446.8 219 100.0
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.5e-100 369.0 223 83.4
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 9.5e-100 367.1 223 83.0
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.6e-99 366.3 222 81.5
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 3.1e-98 362.1 223 83.0
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 5.2e-98 361.3 225 83.1
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 2.6e-97 359.0 227 80.6
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 1.1e-90 337.0 219 77.2
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 3.1e-90 335.5 219 74.9
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 3.1e-90 335.5 219 76.3
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 1.2e-89 333.6 224 75.4
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 1.5e-89 333.2 224 75.0
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 7.6e-89 330.9 224 75.4
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 9.9e-89 330.5 221 75.1
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 1.3e-88 330.1 224 75.9
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 3.8e-88 328.6 221 74.2
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 5.4e-87 324.7 218 74.3
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 3.9e-85 318.5 221 73.3
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 3.3e-84 315.5 199 76.4
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 9.6e-84 313.9 199 75.9
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 1.3e-83 313.5 199 74.4
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 1.1e-82 310.5 229 69.0
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 1.8e-82 309.7 222 70.3
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 5.3e-82 308.1 199 73.9
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 6.9e-82 307.8 204 75.0
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 1.5e-81 306.6 225 70.2
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 4.5e-81 305.1 227 68.7
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 7.6e-81 304.3 197 75.6
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 9.9e-81 303.9 223 69.5
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 9.9e-81 303.9 222 70.7
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 1.3e-80 303.5 228 66.7
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 2.2e-80 302.8 222 73.0
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 2.9e-80 302.4 220 68.6
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 6.4e-80 301.2 224 68.8
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 1.1e-79 300.4 219 71.7
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 1.1e-79 300.4 222 68.9
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 1.4e-79 300.1 219 69.9
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 1.9e-79 299.7 227 67.0
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 2.4e-79 299.3 220 69.1
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 3.2e-79 298.9 227 69.2
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 5.4e-79 298.1 219 70.3
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 5.4e-79 298.1 203 70.9
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 5.4e-79 298.1 227 64.8
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 1.2e-78 297.0 231 65.8
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 1.2e-78 297.0 223 67.3
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 2.7e-78 295.8 192 73.4
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 2.7e-78 295.8 222 68.5
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 6.0e-78 294.7 219 69.9
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 1.0e-77 293.9 205 73.2
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 1.3e-77 293.5 221 68.8
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 1.7e-77 293.1 219 69.4
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 2.3e-77 292.7 225 67.1
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 5.1e-77 291.6 225 67.6
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 6.6e-77 291.2 219 70.3
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 8.7e-77 290.8 219 70.3
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 8.7e-77 290.8 219 70.3
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.5e-76 290.0 209 69.9
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 1.9e-76 289.7 219 69.4
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 1.9e-76 289.7 219 68.9
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 2.5e-76 289.3 208 67.8
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 4.3e-76 288.5 208 67.8
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 4.3e-76 288.5 173 79.2
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 7.4e-76 287.7 219 68.0
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 9.6e-76 287.3 225 65.3
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 9.6e-76 287.3 229 67.7
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 3.6e-75 285.4 230 64.8
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 1.1e-74 283.9 226 64.2
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.4e-74 283.5 230 64.3
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 3.1e-74 282.3 208 66.3
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 5.3e-74 281.6 183 73.8
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 6.9e-74 281.2 151 88.7
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 1.2e-73 280.4 177 75.7
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 1.5e-73 280.0 203 66.5
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 2.0e-73 279.6 176 76.7
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 2.0e-73 279.6 191 70.7
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 2.0e-73 279.6 212 67.0
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 5.8e-73 278.1 227 63.4
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 7.6e-73 277.7 219 67.6
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 1.7e-72 276.6 207 67.1
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 2.2e-72 276.2 175 76.0
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 4.9e-72 275.0 201 69.7
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 1.9e-71 273.1 176 74.4
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 4.2e-71 271.9 221 65.6
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 2.1e-70 269.6 222 64.9
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 8.1e-67 257.7 204 66.2
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 2.4e-66 256.1 174 70.1
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 3.1e-66 255.8 196 66.3
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 1.2e-65 253.8 213 58.2
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 2.6e-65 252.7 203 66.0
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 5.8e-65 251.5 168 73.2
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 7.6e-65 251.1 177 64.4
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 3.2e-63 245.7 155 76.1
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 5.5e-63 245.0 152 78.9
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 9.3e-63 244.2 221 58.8
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 1.6e-62 243.4 177 63.8
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 9.6e-60 234.2 225 58.7
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 1.3e-59 233.8 203 58.6
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 2.4e-58 229.6 171 63.2
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 4.1e-58 228.8 228 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 1.2e-57 227.3 169 64.5
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 1.2e-57 227.3 174 67.2
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 2.6e-57 226.1 253 53.4
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 5.9e-57 224.9 168 70.2
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 3.2e-55 219.2 233 53.2
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 3.6e-54 215.7 151 67.5
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 5.7e-52 208.4 222 53.2
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 1.9e-47 193.4 188 54.3
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 1.4e-45 187.2 210 53.3
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 3.0e-45 186.0 174 52.9
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 4.8e-43 178.7 105 79.0
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 5.9e-41 171.8 110 75.5
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 7.7e-41 171.4 95 88.4
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 5.5e-39 165.2 126 67.5
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 7.9e-38 161.4 108 70.4
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 7.4e-36 154.8 125 62.4
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 3.5e-33 146.0 138 58.0
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.9e-32 142.9 76 88.2
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.5e-31 140.6 95 69.5
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.2e-31 139.4 98 65.3
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 7.2e-31 138.3 142 54.9
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 7.2e-31 138.3 115 65.2
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 8.8e-29 131.3 83 73.5
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 1.8e-26 123.6 159 43.4
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 1.1e-23 114.4 70 75.7
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 2.1e-22 110.2 70 72.9
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 4.4e-20 102.4 70 67.1
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 1.3e-19 100.9 64 71.9
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 3.1e-18 96.3 54 79.6
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 1.6e-17 94.0 93 58.1
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 2.9e-16 89.7 62 69.4
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 4.0e-13 79.3 59 66.1


User provided reference genes

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