Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 6.4e-100 367.9 252 100.0
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 6.5e-76 288.1 252 77.0
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 2.0e-72 276.6 193 83.9
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 1.9e-67 260.0 194 70.1
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 3.2e-67 259.2 195 70.3
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 4.7e-66 255.4 195 68.7
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 7.9e-66 254.6 194 69.1
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.8e-65 253.4 195 68.7
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 6.7e-65 251.5 195 68.2
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 8.8e-65 251.1 195 68.2
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 2.6e-40 169.9 191 50.8
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 9.8e-40 167.9 186 52.2
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 1.3e-39 167.5 186 50.5
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 2.2e-39 166.8 194 52.1
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 4.8e-39 165.6 191 49.7
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 3.1e-38 162.9 187 51.3
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 5.4e-38 162.2 207 50.7
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 7.0e-38 161.8 191 51.8
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 1.6e-37 160.6 207 51.7
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 2.0e-37 160.2 195 48.7
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 4.5e-37 159.1 110 71.8
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 5.9e-37 158.7 190 48.4
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 5.9e-37 158.7 190 51.6
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 1.0e-36 157.9 189 48.1
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 1.0e-36 157.9 202 46.5
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 1.3e-36 157.5 181 51.9
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 1.3e-36 157.5 190 50.5
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 1.7e-36 157.1 189 48.7
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 1.7e-36 157.1 190 51.1
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 2.3e-36 156.8 191 47.1
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 3.8e-36 156.0 181 51.4
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 8.6e-36 154.8 190 50.5
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 1.1e-35 154.5 189 48.1
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 1.5e-35 154.1 186 48.4
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 1.5e-35 154.1 187 51.3
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 1.9e-35 153.7 201 45.8
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 1.9e-35 153.7 199 47.7
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 2.5e-35 153.3 192 46.9
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 2.5e-35 153.3 192 46.9
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 3.3e-35 152.9 201 50.2
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 3.3e-35 152.9 177 50.3
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 4.2e-35 152.5 190 46.8
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 5.5e-35 152.1 197 46.2
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 7.2e-35 151.8 181 53.6
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 9.5e-35 151.4 192 46.9
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 2.1e-34 150.2 191 48.7
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 2.8e-34 149.8 198 48.0
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 4.7e-34 149.1 201 47.8
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 4.7e-34 149.1 189 46.6
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 6.1e-34 148.7 183 46.4
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 6.1e-34 148.7 194 46.4
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 1.8e-33 147.1 192 47.4
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 5.2e-33 145.6 200 48.0
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 5.2e-33 145.6 184 47.3
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 8.9e-33 144.8 178 48.3
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 8.9e-33 144.8 178 48.3
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 1.2e-32 144.4 186 47.8
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 1.5e-32 144.1 183 49.2
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 2.0e-32 143.7 186 49.5
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 2.6e-32 143.3 179 48.6
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 4.4e-32 142.5 192 47.4
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 4.4e-32 142.5 192 47.4
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 5.7e-32 142.1 199 45.7
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 5.7e-32 142.1 194 45.9
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 7.5e-32 141.7 193 47.2
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 7.5e-32 141.7 190 45.3
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 7.5e-32 141.7 193 47.2
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 9.8e-32 141.4 188 46.3
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 1.3e-31 141.0 162 49.4
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 2.2e-31 140.2 180 44.4
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 2.2e-31 140.2 203 47.3
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 2.2e-31 140.2 200 45.5
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 2.8e-31 139.8 189 46.6
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 2.8e-31 139.8 194 45.4
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 4.9e-31 139.0 197 44.7
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 6.3e-31 138.7 191 46.6
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 8.3e-31 138.3 198 43.9
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 8.3e-31 138.3 187 45.5
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 1.4e-30 137.5 169 48.5
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 1.4e-30 137.5 191 44.0
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 1.8e-30 137.1 184 45.7
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 2.4e-30 136.7 191 45.5
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 3.2e-30 136.3 189 46.6
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 4.1e-30 136.0 207 41.1
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 9.2e-30 134.8 165 49.1
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 9.2e-30 134.8 207 41.1
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 1.2e-29 134.4 176 46.6
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 1.2e-29 134.4 196 41.8
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 3.5e-29 132.9 183 44.3
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 5.9e-29 132.1 187 43.3
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 7.8e-29 131.7 210 42.9
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 1.3e-28 131.0 159 50.9
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 1.7e-28 130.6 188 45.7
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 2.9e-28 129.8 188 42.6
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 5.0e-28 129.0 193 41.5
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 5.0e-28 129.0 190 44.7
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 8.6e-28 128.3 197 40.1
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 2.5e-27 126.7 188 44.7
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 3.3e-27 126.3 190 44.7
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 3.3e-27 126.3 186 43.0
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 4.3e-27 125.9 209 43.1
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 5.6e-27 125.6 183 42.1
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 9.5e-27 124.8 205 39.5
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 9.5e-27 124.8 192 41.1
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 3.6e-26 122.9 189 42.9
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 6.1e-26 122.1 236 38.1
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 3.1e-25 119.8 188 45.2
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 5.2e-25 119.0 166 45.8
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 8.3e-23 111.7 170 43.5
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 1.5e-19 100.9 153 49.7
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 7.3e-19 98.6 241 33.6
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 2.8e-18 96.7 101 49.5
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 7.5e-16 88.6 179 38.5
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 2.2e-15 87.0 109 45.9
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 3.7e-15 86.3 105 45.7
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 7.1e-14 82.0 88 54.5
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 8.6e-12 75.1 55 69.1
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 1.1e-11 74.7 285 28.8
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 6.2e-10 68.9 199 30.7
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 3.4e-08 63.2 214 27.1
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 3.4e-08 63.2 121 34.7


User provided reference genes

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