Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 4.9e-146 521.2 270 100.0
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 7.3e-134 480.7 268 91.4
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 3.6e-117 425.2 275 80.0
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.4e-116 423.3 286 77.3
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 7.1e-113 411.0 267 77.9
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.0e-111 407.1 276 77.9
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.3e-111 406.8 276 77.9
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 1.3e-111 406.8 269 78.8
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-110 403.7 276 76.8
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.5e-110 403.3 276 77.5
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 5.6e-110 401.4 273 74.7
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 6.9e-108 394.4 245 81.6
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 4.5e-107 391.7 271 74.9
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 4.9e-106 388.3 271 73.4
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.4e-106 387.9 286 73.4
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 8.4e-106 387.5 273 73.3
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 1.4e-105 386.7 267 74.2
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 9.3e-105 384.0 267 73.0
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 1.2e-104 383.6 257 74.3
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 1.6e-104 383.3 268 74.6
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 1.6e-104 383.3 272 73.9
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 7.9e-104 380.9 271 71.2
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 1.3e-103 380.2 267 71.5
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.3e-103 379.4 267 72.3
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.3e-103 379.4 267 72.3
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 3.0e-103 379.0 271 70.1
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 3.9e-103 378.6 268 74.3
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 1.1e-102 377.1 267 72.3
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 1.9e-102 376.3 270 71.9
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 9.6e-102 374.0 270 71.9
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 2.8e-101 372.5 267 70.8
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 2.8e-101 372.5 273 69.6
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 4.8e-101 371.7 267 70.8
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 4.8e-101 371.7 267 69.7
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 8.1e-101 370.9 267 71.5
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.8e-100 369.8 262 69.8
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 1.8e-100 369.8 273 68.5
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 1.8e-100 369.8 271 69.4
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 3.1e-100 369.0 273 68.9
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 3.1e-100 369.0 273 68.9
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 3.1e-100 369.0 271 69.0
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 5.3e-100 368.2 270 69.6
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 1.2e-99 367.1 277 70.4
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 1.5e-99 366.7 267 68.5
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 2.0e-99 366.3 267 70.0
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 2.0e-99 366.3 270 68.5
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 3.4e-99 365.5 267 68.9
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 4.5e-99 365.2 270 68.5
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 1.0e-98 364.0 272 68.4
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 3.8e-98 362.1 273 66.7
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 3.8e-98 362.1 270 68.1
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 1.1e-97 360.5 264 68.9
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 3.5e-96 355.5 271 66.1
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 6.7e-95 351.3 271 67.5
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 1.1e-94 350.5 268 67.5
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 1.9e-94 349.7 270 67.4
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 4.3e-94 348.6 277 65.0
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 4.3e-94 348.6 268 65.7
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 2.1e-93 346.3 300 61.3
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 2.8e-93 345.9 267 66.3
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 8.2e-93 344.4 273 65.9
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 1.4e-92 343.6 269 65.8
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.8e-92 343.2 268 65.7
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 6.9e-92 341.3 270 65.2
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 1.2e-91 340.5 264 66.3
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 1.5e-91 340.1 267 65.9
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 1.5e-91 340.1 269 66.9
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 2.0e-91 339.7 270 66.7
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.0e-90 337.4 269 65.4
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 1.3e-90 337.0 335 55.5
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 2.9e-90 335.9 246 69.1
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 3.8e-90 335.5 269 65.1
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 5.0e-90 335.1 271 64.2
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 2.5e-89 332.8 267 64.0
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 5.5e-89 331.6 257 65.8
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 5.5e-89 331.6 270 63.3
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 9.3e-89 330.9 267 65.2
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 2.7e-88 329.3 271 63.1
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 3.5e-88 328.9 270 63.3
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 1.3e-87 327.0 270 63.0
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 2.3e-87 326.2 268 63.8
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.1e-86 323.9 269 63.6
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.4e-84 317.0 260 60.4
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 9.0e-84 314.3 268 60.4
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 5.5e-81 305.1 216 68.5
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 2.1e-80 303.1 245 62.9
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.1e-76 290.8 269 58.4
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.8e-76 290.0 194 76.8
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 2.6e-75 286.2 268 58.6
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 2.2e-74 283.1 275 53.8
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 6.5e-74 281.6 284 54.9
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 2.5e-73 279.6 254 57.5
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.8e-71 273.5 269 54.6
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 1.8e-68 263.5 272 52.6
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.2e-67 260.8 188 66.5
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 2.5e-65 253.1 181 68.5
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 1.5e-62 243.8 245 55.5
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 2.6e-62 243.0 265 51.3
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 1.0e-58 231.1 246 53.3
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 3.2e-57 226.1 212 59.0
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 2.0e-54 216.9 257 45.1
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 3.4e-54 216.1 349 45.0
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 7.7e-51 204.9 268 41.8
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 3.8e-50 202.6 258 41.1
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 1.8e-47 193.7 226 45.6
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 4.0e-47 192.6 148 64.2
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 3.1e-44 183.0 158 65.2
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 6.8e-39 165.2 112 76.8
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.7e-38 162.2 115 78.3
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.7e-38 162.2 115 78.3
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.4e-36 157.5 129 62.0
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 7.8e-35 151.8 140 55.7
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 3.9e-34 149.4 84 86.9
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.5e-33 147.5 105 71.4
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 1.8e-31 140.6 146 54.8
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 2.3e-31 140.2 160 50.6
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 1.0e-26 124.8 84 70.2
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 2.3e-26 123.6 268 31.3
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 3.3e-25 119.8 87 72.4
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 2.1e-24 117.1 112 57.1
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 3.6e-24 116.3 183 35.5
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 6.8e-23 112.1 107 57.9
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.5e-22 108.6 211 40.8
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 2.9e-21 106.7 109 55.0
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 6.4e-21 105.5 74 73.0
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 2.4e-20 103.6 68 72.1
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 2.1e-19 100.5 74 71.6
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 1.0e-18 98.2 58 89.7
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 2.3e-18 97.1 124 48.4
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.5e-17 93.6 80 61.2
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 7.3e-17 92.0 103 54.4
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 1.6e-16 90.9 69 62.3
FAN06G0568 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.0e-11 72.4 56 62.5
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 1.5e-09 67.8 82 51.2
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 4.3e-09 66.2 109 37.6
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 8.9e-07 58.5 68 47.1


User provided reference genes

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