Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G138200 Prunus persica HOM05D007090 ORTHO05D008993 3.4e-140 501.9 302 100.0
MD02G1210400 Malus domestica HOM05D007090 ORTHO05D008993 5.0e-75 285.4 306 66.7
FAN10G1641 Fragaria x ananassa HOM05D007090 ORTHO05D008993 3.1e-64 249.6 311 58.5
CiPaw.13G032600 Carya illinoinensis HOM05D007090 ORTHO05D008993 8.9e-64 248.1 280 52.9
QL04p038719 Quercus lobata HOM05D007090 ORTHO05D008993 7.5e-63 245.0 306 58.5
RcHm_v2.0_Chr1g0349121 Rosa chinensis HOM05D007090 ORTHO05D008993 1.3e-62 244.2 303 60.1
CANSAT56G0199 Cannabis sativa HOM05D007090 ORTHO05D008993 7.1e-61 238.4 273 57.9
CANSAT56G4322 Cannabis sativa HOM05D007090 ORTHO05D008993 7.1e-61 238.4 286 57.3
FvH4_7g11100 Fragaria vesca HOM05D007090 ORTHO05D008993 2.7e-60 236.5 302 59.9
Thecc.01G382600 Theobroma cacao HOM05D007090 ORTHO05D008993 3.5e-60 236.1 271 59.4
FAN06G0781 Fragaria x ananassa HOM05D007090 ORTHO05D008993 4.3e-58 229.2 310 58.4
TAR375G0613 Trochodendron aralioides HOM05D007090 ORTHO05D008993 7.3e-58 228.4 313 49.8
Phvul.010G072500 Phaseolus vulgaris HOM05D007090 ORTHO05D008993 1.2e-57 227.6 302 57.9
FAN01G0616 Fragaria x ananassa HOM05D007090 ORTHO05D008993 4.7e-57 225.7 370 49.5
Haze_02682 Corylus avellana HOM05D007090 ORTHO05D008993 3.1e-56 223.0 276 56.9
Lj3g0011300 Lotus japonicus HOM05D007090 ORTHO05D008993 4.0e-56 222.6 306 54.2
vmacro13441 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 4.4e-55 219.2 338 44.4
Potri.014G060700 Populus trichocarpa HOM05D007090 ORTHO05D008993 8.4e-54 214.9 304 49.7
VMungo0331G0297 Vigna mungo HOM05D007090 ORTHO05D008993 1.4e-53 214.2 302 53.0
GSVIVG01027682001 Vitis vinifera HOM05D007090 ORTHO05D008993 1.2e-52 211.1 304 50.3
FAN10G4025 Fragaria x ananassa HOM05D007090 ORTHO05D008993 3.5e-52 209.5 165 66.1
Gohir.D11G083500 Gossypium hirsutum HOM05D007090 ORTHO05D008993 3.5e-52 209.5 306 55.2
Lalb_Chr12g0207911 Lupinus albus HOM05D007090 ORTHO05D008993 4.6e-52 209.1 269 55.4
FAN03G3027 Fragaria x ananassa HOM05D007090 ORTHO05D008993 7.8e-52 208.4 403 47.1
FAN06G2008 Fragaria x ananassa HOM05D007090 ORTHO05D008993 7.8e-52 208.4 310 54.8
Sc26g0001310 Simmondsia chinensis HOM05D007090 ORTHO05D008993 1.3e-51 207.6 272 52.9
Glyma.03G032000 Glycine max HOM05D007090 ORTHO05D008993 5.1e-51 205.7 292 55.1
COL.COLO4_12490 Corchorus olitorius HOM05D007090 ORTHO05D008993 1.1e-50 204.5 274 56.2
CsaV3_6G008990 Cucumis sativus L. HOM05D007090 ORTHO05D008993 2.1e-49 200.3 297 44.1
arahy.Tifrunner.gnm1.ann1.UP4D5N Arachis hypogaea HOM05D007090 ORTHO05D008993 3.6e-49 199.5 266 55.6
Actinidia22817 Actinidia chinensis HOM05D007090 ORTHO05D008993 4.7e-49 199.1 289 54.0
Eucgr.E01513 Eucalyptus grandis HOM05D007090 ORTHO05D008993 6.2e-49 198.7 272 52.2
TPR.G4946 Trifolium pratense HOM05D007090 ORTHO05D008993 1.8e-48 197.2 275 57.1
Duzib138G0673 Durio zibethinus HOM05D007090 ORTHO05D008993 4.0e-48 196.1 308 52.3
Nitab4.5_0000859g0240 Nicotiana tabacum HOM05D007090 ORTHO05D008993 5.2e-48 195.7 317 42.0
Atru.chr5.252 Acer truncatum HOM05D007090 ORTHO05D008993 1.2e-47 194.5 304 53.9
Hund17045 Selenicereus undatus HOM05D007090 ORTHO05D008993 2.0e-47 193.7 267 50.2
Cc02_g24410 Coffea canephora HOM05D007090 ORTHO05D008993 3.4e-47 193.0 298 48.7
Actinidia22762 Actinidia chinensis HOM05D007090 ORTHO05D008993 4.4e-47 192.6 250 58.0
vmacro22435 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 7.6e-47 191.8 280 45.7
Ca_19835_v3 Cicer arietinum L. HOM05D007090 ORTHO05D008993 1.3e-46 191.0 303 52.1
Ciclev10021511m.g Citrus clementina HOM05D007090 ORTHO05D008993 1.7e-46 190.7 310 51.6
Manes.05G048800 Manihot esculenta HOM05D007090 ORTHO05D008993 2.2e-46 190.3 268 56.0
MSTRG.4910 Avicennia marina HOM05D007090 ORTHO05D008993 2.9e-46 189.9 310 47.4
PGR042G2604 Punica granatum HOM05D007090 ORTHO05D008993 1.9e-45 187.2 265 48.7
Rhsim07G0031100 Rhododendron simsii HOM05D007090 ORTHO05D008993 1.9e-45 187.2 300 47.0
PSO782G4184 Papaver somniferum HOM05D007090 ORTHO05D008993 4.2e-45 186.0 285 44.2
Lsat_1_v5_gn_4_45521 Lactuca sativa HOM05D007090 ORTHO05D008993 5.4e-45 185.7 306 43.5
Medtr4g026500 Medicago truncatula HOM05D007090 ORTHO05D008993 2.1e-44 183.7 297 50.2
Migut.N01613 Erythranthe guttata HOM05D007090 ORTHO05D008993 6.0e-44 182.2 260 45.4
Psat7g236160 Pisum sativum HOM05D007090 ORTHO05D008993 6.0e-44 182.2 296 51.0
arahy.Tifrunner.gnm1.ann1.KQM8V4 Arachis hypogaea HOM05D007090 ORTHO05D008993 3.0e-43 179.9 260 53.8
HanXRQChr03g0088131 Helianthus annuus HOM05D007090 ORTHO05D008993 5.1e-43 179.1 294 48.6
Gorai.007G089100 Gossypium raimondii HOM05D007090 ORTHO05D008993 8.7e-43 178.3 306 51.6
THA.LOC104803743 Tarenaya hassleriana HOM05D007090 ORTHO05D008993 8.7e-43 178.3 268 48.9
SalBow5G5305 Salvia bowleyana HOM05D007090 ORTHO05D008993 1.5e-42 177.6 301 47.8
PSO063G1752 Papaver somniferum HOM05D007090 ORTHO05D008993 9.6e-42 174.9 322 43.8
Sabra14G0044500 Salix brachista HOM05D007090 ORTHO05D008993 2.8e-41 173.3 307 45.0
TWI23G0238 Tripterygium wilfordii HOM05D007090 ORTHO05D008993 2.4e-40 170.2 309 41.4
CSS0011917 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 6.9e-40 168.7 188 52.1
Aqoxy5G03901 Aquilegia oxysepala HOM05D007090 ORTHO05D008993 9.9e-39 164.9 287 52.6
Aa31LG5G170 Aethionema arabicum HOM05D007090 ORTHO05D008993 2.2e-38 163.7 274 42.3
Ah.08g212650 Amaranthus hybridus HOM05D007090 ORTHO05D008993 2.9e-38 163.3 278 48.6
DCAR_015886 Daucus carota HOM05D007090 ORTHO05D008993 2.9e-38 163.3 249 45.8
Sp6g00210 Schrenkiella parvula HOM05D007090 ORTHO05D008993 4.9e-38 162.5 261 42.1
Thhalv10028898m.g Eutrema salsugineum HOM05D007090 ORTHO05D008993 8.4e-38 161.8 258 43.8
Hma1.2p1_0005F.1_g004490 Hydrangea macrophylla HOM05D007090 ORTHO05D008993 1.1e-37 161.4 268 52.6
Oeu051923.2 Olea europaea HOM05D007090 ORTHO05D008993 1.6e-36 157.5 277 46.2
Nn1g01037 Nelumbo nucifera HOM05D007090 ORTHO05D008993 4.6e-36 156.0 298 43.0
Os04g0534300 Oryza sativa ssp. japonica HOM05D007090 ORTHO05D008993 4.6e-36 156.0 274 44.9
MELO3C022245.2 Cucumis melo HOM05D007090 ORTHO05D008993 6.0e-36 155.6 297 40.7
EL10Ac1g00840 Beta vulgaris HOM05D007090 ORTHO05D008993 7.9e-36 155.2 171 48.5
AL6G53360 Arabidopsis lyrata HOM05D007090 ORTHO05D008993 1.7e-35 154.1 269 44.6
Peaxi162Scf00803g00118 Petunia axillaris HOM05D007090 ORTHO05D008993 3.3e-34 149.8 186 47.3
Carub.0006s3709 Capsella rubella HOM05D007090 ORTHO05D008993 4.3e-34 149.4 261 46.7
ECA234G0545 Erigeron canadensis HOM05D007090 ORTHO05D008993 5.6e-34 149.1 258 50.4
Sopen01g036660 Solanum pennellii HOM05D007090 ORTHO05D008993 7.4e-34 148.7 327 35.2
Dinv44119 Davidia involucrata HOM05D007090 ORTHO05D008993 1.3e-33 147.9 281 44.1
AT1G73440 Arabidopsis thaliana HOM05D007090 ORTHO05D008993 2.1e-33 147.1 286 43.4
CAN.G1469.17 Capsicum annuum HOM05D007090 ORTHO05D008993 2.8e-33 146.7 316 36.1
ClCG06G002820 Citrullus lanatus HOM05D007090 ORTHO05D008993 3.6e-33 146.4 311 38.6
Solyc01g090920.3 Solanum lycopersicum HOM05D007090 ORTHO05D008993 3.6e-33 146.4 334 33.8
SGA_v2.0_scaffold11G05536 Striga asiatica HOM05D007090 ORTHO05D008993 4.8e-33 146.0 271 36.2
unitig_748.g7116 Utricularia gibba HOM05D007090 ORTHO05D008993 6.2e-33 145.6 257 37.7
Nitab4.5_0008963g0010 Nicotiana tabacum HOM05D007090 ORTHO05D008993 1.5e-31 141.0 314 33.1
Gohir.A11G078900 Gossypium hirsutum HOM05D007090 ORTHO05D008993 2.0e-31 140.6 241 56.4
Sed0010456 Sechium edule HOM05D007090 ORTHO05D008993 1.7e-30 137.5 268 41.8
BcaB01g02215 Brassica carinata HOM05D007090 ORTHO05D008993 1.4e-29 134.4 267 45.3
CSS0004451 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 3.2e-29 133.3 160 49.4
CARHR248180 Cardamine hirsuta HOM05D007090 ORTHO05D008993 5.5e-29 132.5 268 42.5
PGSC0003DMG400025974 Solanum tuberosum HOM05D007090 ORTHO05D008993 5.5e-29 132.5 327 39.4
CDE04G3442 Ceratophyllum demersum HOM05D007090 ORTHO05D008993 2.1e-28 130.6 270 35.6
ATR0317G013 Amborella trichopoda HOM05D007090 ORTHO05D008993 6.0e-28 129.0 169 44.4
Eucgr.E01517 Eucalyptus grandis HOM05D007090 ORTHO05D008993 3.7e-25 119.8 79 69.6
C09p00130 Brassica napus HOM05D007090 ORTHO05D008993 3.4e-23 113.2 282 37.9
BolC9t52948H Brassica oleracea HOM05D007090 ORTHO05D008993 3.4e-23 113.2 266 41.4
BraA09t35687Z Brassica rapa HOM05D007090 ORTHO05D008993 3.4e-23 113.2 282 37.9
BcaC04g24200 Brassica carinata HOM05D007090 ORTHO05D008993 5.8e-23 112.5 266 41.4
A09p00730 Brassica napus HOM05D007090 ORTHO05D008993 7.6e-23 112.1 282 38.3
Cpa.g.sc49.155 Carica papaya HOM05D007090 ORTHO05D008993 7.9e-20 102.1 58 74.1
ECA234G4391 Erigeron canadensis HOM05D007090 ORTHO05D008993 8.2e-17 92.0 163 39.3
Pp3c13_5390 Physcomitrium patens HOM05D007090 ORTHO05D008993 9.0e-16 88.6 303 26.4
CBR_g23736 Chara braunii HOM05D007090 ORTHO05D008993 4.6e-12 76.3 169 31.4
SMO137G0209 Selaginella moellendorffii HOM05D007090 ORTHO05D008993 6.1e-12 75.9 149 33.6
SEGI_04858 Sequoiadendron giganteum HOM05D007090 ORTHO05D008993 1.0e-11 75.1 54 55.6
Mapoly0035s0135 Marchantia polymorpha HOM05D007090 ORTHO05D008993 4.3e-10 69.7 171 32.2
BcaB07g33677 Brassica carinata HOM05D000135 ORTHO05D011359 2.2e-06 57.4 65 46.2
SMO171G0115 Selaginella moellendorffii HOM05D000227 ORTHO05D004725 2.9e-06 57.0 64 45.3


User provided reference genes

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