Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G137400 Prunus persica HOM05D010926 ORTHO05D011735 1.8e-107 392.5 189 100.0
MD07G1115400 Malus domestica HOM05D010926 ORTHO05D011735 1.9e-56 223.0 205 64.4
MD02G1210800 Malus domestica HOM05D010926 ORTHO05D011735 3.6e-47 192.2 154 66.9
Potri.014G061266 Populus trichocarpa HOM05D010926 ORTHO05D011735 1.9e-32 143.3 201 42.8
Potri.001G135925 Populus trichocarpa HOM05D010926 ORTHO05D011735 2.5e-32 142.9 201 42.8
Potri.014G061133 Populus trichocarpa HOM05D010926 ORTHO05D011735 4.8e-31 138.7 170 45.3
Sabra14G0045700 Salix brachista HOM05D010926 ORTHO05D011735 1.3e-28 130.6 199 41.2
Sabra14G0045000 Salix brachista HOM05D010926 ORTHO05D011735 7.1e-27 124.8 171 43.9
Ciclev10006726m.g Citrus clementina HOM05D010926 ORTHO05D011735 1.0e-17 94.4 126 40.5
QL04p038305 Quercus lobata HOM05D010926 ORTHO05D011735 1.8e-17 93.6 179 35.2
Ciclev10006601m.g Citrus clementina HOM05D010926 ORTHO05D011735 3.0e-17 92.8 113 43.4
Lalb_Chr07g0190261 Lupinus albus HOM05D017052 ORTHO05D011735 9.6e-16 87.8 110 40.9
Glyma.01G135800 Glycine max HOM05D017052 ORTHO05D011735 1.3e-15 87.4 142 35.2
Atru.chr2.3695 Acer truncatum HOM05D010926 ORTHO05D011735 3.7e-15 85.9 153 37.9
Ciclev10007031m.g Citrus clementina HOM05D010926 ORTHO05D011735 8.2e-15 84.7 109 42.2
Rhsim07G0031400 Rhododendron simsii HOM05D010926 ORTHO05D011735 2.4e-14 83.2 160 33.8
Ciclev10003368m.g Citrus clementina HOM05D055733 ORTHO05D011735 9.0e-14 81.3 115 44.3
QL04p038362 Quercus lobata HOM05D010926 ORTHO05D011735 2.0e-13 80.1 135 37.8
Medtr4g027195 Medicago truncatula HOM05D017052 ORTHO05D011735 2.6e-13 79.7 133 39.1
Phvul.010G072200 Phaseolus vulgaris HOM05D017052 ORTHO05D011735 7.6e-13 78.2 155 35.5
TPR.G5040 Trifolium pratense HOM05D017052 ORTHO05D011735 7.1e-11 71.6 151 34.4
Ciclev10003779m.g Citrus clementina HOM05D055733 ORTHO05D011735 9.3e-11 71.2 122 38.5
Sabra14G0045100 Salix brachista HOM05D010926 ORTHO05D011735 3.5e-10 69.3 110 42.7
Hma1.2p1_0316F.1_g122780 Hydrangea macrophylla HOM05D010926 ORTHO05D008136 3.0e-09 66.2 88 35.2
QL01p050041 Quercus lobata HOM05D008848 ORTHO05D008136 3.9e-09 65.9 97 36.1
Rhsim07G0111900 Rhododendron simsii HOM05D008848 ORTHO05D008136 3.9e-09 65.9 115 38.3
arahy.Tifrunner.gnm1.ann1.X8S0CU Arachis hypogaea HOM05D017052 ORTHO05D011735 5.1e-09 65.5 109 36.7
Medtr4g027225 Medicago truncatula HOM05D017052 ORTHO05D011735 8.7e-09 64.7 91 44.0
Gorai.011G287300 Gossypium raimondii HOM05D009631 ORTHO05D011824 3.3e-08 62.8 136 33.1
Rhsim07G0111800 Rhododendron simsii HOM05D008848 ORTHO05D008136 3.3e-08 62.8 87 43.7
Rhsim07G0113000 Rhododendron simsii HOM05D009466 ORTHO05D008136 3.3e-08 62.8 87 39.1
Rhsim07G0111000 Rhododendron simsii HOM05D009466 ORTHO05D008136 5.7e-08 62.0 117 33.3
Potri.006G034450 Populus trichocarpa HOM05D008848 ORTHO05D008136 9.7e-08 61.2 113 35.4
Rhsim07G0112300 Rhododendron simsii HOM05D009466 ORTHO05D008136 1.3e-07 60.8 115 32.2
Sabra06G0022800 Salix brachista HOM05D008848 ORTHO05D008136 1.3e-07 60.8 113 36.3
Potri.016G032783 Populus trichocarpa HOM05D008848 ORTHO05D008136 1.6e-07 60.5 86 39.5
Medtr4g027105 Medicago truncatula HOM05D017052 ORTHO05D011735 2.8e-07 59.7 90 40.0
Rhsim07G0111100 Rhododendron simsii HOM05D009466 ORTHO05D008136 3.7e-07 59.3 58 46.6
Gorai.011G287500 Gossypium raimondii HOM05D009631 ORTHO05D011824 6.3e-07 58.5 100 35.0
Rhsim07G0112900 Rhododendron simsii HOM05D009466 ORTHO05D008136 6.3e-07 58.5 142 31.0
Gorai.011G287200 Gossypium raimondii HOM05D009631 ORTHO05D011824 8.2e-07 58.2 103 34.0
Rhsim07G0111200 Rhododendron simsii HOM05D008848 ORTHO05D008136 8.2e-07 58.2 115 36.5
Gorai.011G287400 Gossypium raimondii HOM05D009631 ORTHO05D011824 1.1e-06 57.8 100 35.0
Rhsim07G0111500 Rhododendron simsii HOM05D008848 ORTHO05D008136 1.1e-06 57.8 87 40.2
Rhsim07G0111700 Rhododendron simsii HOM05D008848 ORTHO05D008136 1.1e-06 57.8 115 35.7
QL01p050108 Quercus lobata HOM05D008848 ORTHO05D008136 1.4e-06 57.4 106 33.0
Rhsim07G0110900 Rhododendron simsii HOM05D008848 ORTHO05D008136 1.4e-06 57.4 123 32.5
Ciclev10013523m.g Citrus clementina HOM05D019503 ORTHO05D010785 1.8e-06 57.0 109 34.9
Gorai.011G287000 Gossypium raimondii HOM05D009631 ORTHO05D011824 1.8e-06 57.0 131 30.5
Dinv21661 Davidia involucrata HOM05D008848 ORTHO05D008136 3.1e-06 56.2 138 29.7
QL07p012771 Quercus lobata HOM05D008848 ORTHO05D008136 3.1e-06 56.2 88 37.5
QL07p012914 Quercus lobata HOM05D008848 ORTHO05D008136 3.1e-06 56.2 88 37.5
Oeu020784.1 Olea europaea HOM05D009287 ORTHO05D008136 4.1e-06 55.8 122 32.0
Sabra14G0045300 Salix brachista HOM05D008789 ORTHO05D010785 4.1e-06 55.8 112 33.9
Dinv06358 Davidia involucrata HOM05D028634 ORTHO05D022500 5.3e-06 55.5 93 33.3
Gorai.011G287100 Gossypium raimondii HOM05D009631 ORTHO05D011824 5.3e-06 55.5 103 33.0
Rhsim07G0111400 Rhododendron simsii HOM05D008848 ORTHO05D008136 5.3e-06 55.5 115 34.8
Potri.001G407401 Populus trichocarpa HOM05D008789 ORTHO05D010785 6.9e-06 55.1 112 31.2
Potri.001G407500 Populus trichocarpa HOM05D008789 ORTHO05D010785 6.9e-06 55.1 112 31.2
Cfa010992 Carpinus fangiana HOM05D024991 ORTHO05D020360 9.0e-06 54.7 137 35.8
Potri.014G065700 Populus trichocarpa HOM05D008789 ORTHO05D010785 9.0e-06 54.7 107 33.6


User provided reference genes

Program Settings