Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 9.0e-116 420.2 208 100.0
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 4.8e-101 371.3 208 88.0
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 1.9e-89 332.8 212 78.8
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.5e-89 332.4 213 78.4
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 3.2e-89 332.0 214 78.0
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 7.2e-89 330.9 211 77.3
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 8.8e-87 323.9 210 77.1
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 8.8e-87 323.9 215 76.3
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 2.4e-84 315.8 198 77.8
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 4.1e-84 315.1 198 77.8
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 5.3e-84 314.7 214 73.8
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 5.3e-84 314.7 215 75.3
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 5.3e-84 314.7 212 74.5
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 2.0e-83 312.8 192 79.2
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 4.5e-83 311.6 198 75.8
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 5.9e-83 311.2 214 73.4
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 7.7e-83 310.8 198 78.3
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 7.7e-83 310.8 214 73.8
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 3.8e-82 308.5 205 75.1
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 3.8e-82 308.5 219 72.1
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 1.9e-81 306.2 211 73.9
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 2.5e-81 305.8 212 74.1
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 3.2e-81 305.4 210 72.9
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 3.2e-81 305.4 210 73.3
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 5.5e-81 304.7 214 72.0
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 9.4e-81 303.9 205 76.1
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 1.6e-80 303.1 188 78.7
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 3.6e-80 302.0 198 73.7
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 8.0e-80 300.8 197 73.6
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 1.0e-79 300.4 196 74.0
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 1.4e-79 300.1 192 77.1
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 2.3e-79 299.3 196 75.5
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 3.0e-79 298.9 218 69.3
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 3.0e-79 298.9 218 69.3
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 3.0e-79 298.9 222 69.8
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 3.0e-79 298.9 209 70.3
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 6.7e-79 297.7 191 76.4
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 6.7e-79 297.7 187 78.6
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 1.5e-78 296.6 225 68.4
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 1.5e-78 296.6 212 71.7
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 2.0e-78 296.2 201 72.1
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 2.6e-78 295.8 194 73.7
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 7.5e-78 294.3 184 78.8
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 7.5e-78 294.3 187 76.5
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 1.3e-77 293.5 203 71.4
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 3.7e-77 292.0 188 76.6
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 6.3e-77 291.2 185 74.6
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 1.1e-76 290.4 212 69.8
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 3.1e-76 288.9 199 71.9
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 4.1e-76 288.5 199 71.9
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 5.3e-76 288.1 188 75.5
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 9.1e-76 287.3 194 73.2
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 9.1e-76 287.3 205 71.7
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 2.0e-75 286.2 208 67.3
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 4.5e-75 285.0 184 75.5
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 5.9e-75 284.6 188 70.7
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 5.9e-75 284.6 201 70.6
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 7.7e-75 284.3 181 76.2
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 6.5e-74 281.2 182 76.4
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 8.5e-74 280.8 213 68.5
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 1.1e-73 280.4 222 66.2
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.5e-73 280.0 201 72.1
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 4.2e-73 278.5 187 70.1
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 9.4e-73 277.3 181 76.2
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 1.6e-72 276.6 191 71.7
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 2.1e-72 276.2 188 69.7
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 3.6e-72 275.4 178 73.6
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 3.6e-72 275.4 178 73.6
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 1.0e-71 273.9 199 66.3
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 1.8e-71 273.1 228 61.4
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 2.3e-71 272.7 175 74.3
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 2.3e-71 272.7 175 74.3
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 3.0e-71 272.3 199 69.3
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 4.0e-71 271.9 191 69.1
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 3.4e-70 268.9 222 62.2
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.2e-69 266.2 176 76.1
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.1e-68 263.8 194 69.6
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 7.0e-68 261.2 181 70.7
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 7.0e-68 261.2 210 66.7
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 2.0e-67 259.6 193 67.4
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 3.5e-67 258.8 180 66.7
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 8.6e-66 254.2 144 84.0
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 7.2e-65 251.1 141 83.7
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 3.7e-61 238.8 163 73.0
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 6.3e-61 238.0 141 78.7
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 1.4e-60 236.9 196 59.7
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 7.0e-60 234.6 173 64.7
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 1.2e-59 233.8 184 66.8
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 1.6e-56 223.4 206 54.4
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 2.1e-56 223.0 156 73.7
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 6.1e-56 221.5 184 64.1
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 1.8e-55 219.9 170 62.4
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 9.8e-54 214.2 164 64.6
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 6.4e-53 211.5 173 57.8
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 3.2e-52 209.1 173 57.2
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 3.9e-50 202.2 145 71.7
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 4.4e-46 188.7 151 67.5
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 3.9e-42 175.6 133 66.9
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 2.0e-38 163.3 193 48.7
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 1.9e-36 156.8 174 49.4
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 5.4e-36 155.2 123 61.8
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 1.3e-34 150.6 180 46.1
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 6.6e-34 148.3 230 39.6
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 7.3e-33 144.8 85 76.5
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 2.1e-32 143.3 134 53.7
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 2.8e-32 142.9 85 75.3
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 1.1e-28 131.0 170 42.9
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 2.8e-24 116.3 56 89.3
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 8.1e-24 114.8 83 67.5
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 1.8e-23 113.6 95 63.2
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 2.2e-21 106.7 177 39.0
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 2.3e-18 96.7 97 55.7
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 3.3e-17 92.8 82 56.1
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 9.9e-14 81.3 62 61.3
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 1.7e-13 80.5 74 58.1
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 2.4e-12 76.6 64 59.4
Lalb_Chr19g0127491 Lupinus albus HOM05D006988 ORTHO05D008731 4.6e-11 72.4 75 57.3
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 3.9e-10 69.3 34 88.2
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 3.3e-09 66.2 33 90.9
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 7.4e-09 65.1 200 28.5
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 1.6e-08 63.9 136 30.9
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 8.1e-08 61.6 141 31.2
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 4.0e-07 59.3 141 30.5
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 2.0e-06 57.0 140 27.9
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 2.6e-06 56.6 136 30.1
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 4.5e-06 55.8 105 28.6
vmacro18658 Vaccinium macrocarpon HOM05D005663 ORTHO05D007258 4.5e-06 55.8 136 26.5
Haze_25191 Corylus avellana HOM05D005663 ORTHO05D007258 7.6e-06 55.1 141 28.4


User provided reference genes

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