Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G132200 Prunus persica HOM05D006946 ORTHO05D008634 2.0e-128 462.6 264 100.0
FAN06G0853 Fragaria x ananassa HOM05D006946 ORTHO05D008634 4.9e-82 308.5 267 60.7
FAN06G0591 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.1e-81 307.4 267 60.7
FvH4_7g10220 Fragaria vesca HOM05D006946 ORTHO05D008634 1.4e-81 307.0 267 60.3
FAN03G2893 Fragaria x ananassa HOM05D006946 ORTHO05D008634 3.1e-81 305.8 267 59.9
RcHm_v2.0_Chr1g0347961 Rosa chinensis HOM05D006946 ORTHO05D008634 4.5e-80 302.0 262 67.9
FAN10G0617 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.3e-79 300.4 267 59.9
FAN10G1802 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.5e-78 297.0 267 59.2
Haze_02851 Corylus avellana HOM05D006946 ORTHO05D008634 1.5e-75 287.0 253 58.5
QL04p030124 Quercus lobata HOM05D006946 ORTHO05D008634 3.4e-75 285.8 262 56.1
GSVIVG01018284001 Vitis vinifera HOM05D006946 ORTHO05D008634 4.4e-75 285.4 260 56.5
Cfa011066 Carpinus fangiana HOM05D006946 ORTHO05D008634 3.2e-73 279.3 257 56.8
Atru.chr5.122 Acer truncatum HOM05D006946 ORTHO05D008634 1.6e-72 276.9 268 56.0
CANSAT25G1232 Cannabis sativa HOM05D006946 ORTHO05D008634 5.6e-70 268.5 264 53.4
Duzib133G0968 Durio zibethinus HOM05D006946 ORTHO05D008634 1.4e-68 263.8 260 53.5
Thecc.01G395400 Theobroma cacao HOM05D006946 ORTHO05D008634 1.8e-68 263.5 262 52.7
Ciclev10020918m.g Citrus clementina HOM05D006946 ORTHO05D008634 5.2e-68 261.9 258 53.5
Phvul.010G049700 Phaseolus vulgaris HOM05D006946 ORTHO05D008634 5.2e-68 261.9 264 52.7
Dinv43613 Davidia involucrata HOM05D006946 ORTHO05D008634 5.8e-67 258.5 250 55.2
Manes.05G055200 Manihot esculenta HOM05D006946 ORTHO05D008634 5.8e-67 258.5 260 53.1
VMungo0331G1797 Vigna mungo HOM05D006946 ORTHO05D008634 2.9e-66 256.1 272 51.1
Medtr8g006950 Medicago truncatula HOM05D006946 ORTHO05D008634 1.4e-65 253.8 271 49.8
Ca_25802_v3 Cicer arietinum L. HOM05D006946 ORTHO05D008634 3.5e-64 249.2 264 49.2
TAR629G0179 Trochodendron aralioides HOM05D006946 ORTHO05D008634 4.6e-64 248.8 270 51.9
TWI14G0580 Tripterygium wilfordii HOM05D006946 ORTHO05D008634 6.0e-64 248.4 240 54.6
Gorai.008G109100 Gossypium raimondii HOM05D006946 ORTHO05D008634 2.3e-63 246.5 260 51.9
Potri.002G138000 Populus trichocarpa HOM05D006946 ORTHO05D008634 3.0e-63 246.1 267 50.9
vmacro13524 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 3.0e-63 246.1 264 51.5
Gohir.D12G100200 Gossypium hirsutum HOM05D006946 ORTHO05D008634 6.6e-63 245.0 260 53.8
vmacro13499 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 6.6e-63 245.0 264 51.5
Glyma.03G110700 Glycine max HOM05D006946 ORTHO05D008634 8.6e-63 244.6 267 50.6
arahy.Tifrunner.gnm1.ann1.GB8G30 Arachis hypogaea HOM05D006946 ORTHO05D008634 1.1e-62 244.2 260 47.7
TPR.G33124 Trifolium pratense HOM05D006946 ORTHO05D008634 1.1e-62 244.2 266 48.5
arahy.Tifrunner.gnm1.ann1.4A1F8H Arachis hypogaea HOM05D006946 ORTHO05D008634 1.5e-62 243.8 260 48.1
PGR042G0965 Punica granatum HOM05D006946 ORTHO05D008634 4.3e-62 242.3 268 48.9
Actinidia18349 Actinidia chinensis HOM05D006946 ORTHO05D008634 1.2e-61 240.7 264 53.0
Actinidia32506 Actinidia chinensis HOM05D006946 ORTHO05D008634 1.2e-61 240.7 264 53.0
Rhsim07G0036200 Rhododendron simsii HOM05D006946 ORTHO05D008634 1.6e-61 240.4 265 51.7
CSS0010598 Camellia sinensis var. sinensis HOM05D006946 ORTHO05D008634 2.1e-61 240.0 264 51.1
COL.COLO4_12403 Corchorus olitorius HOM05D006946 ORTHO05D008634 4.7e-61 238.8 269 50.9
Lj3g0014310 Lotus japonicus HOM05D006946 ORTHO05D008634 1.2e-59 234.2 237 51.1
Nn1g00836 Nelumbo nucifera HOM05D006946 ORTHO05D008634 4.4e-59 232.3 267 49.4
Lalb_Chr07g0195411 Lupinus albus HOM05D006946 ORTHO05D008634 1.7e-58 230.3 263 48.3
Medtr5g027110 Medicago truncatula HOM05D006946 ORTHO05D008634 1.7e-58 230.3 252 48.4
Hma1.2p1_0072F.1_g038310 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 3.7e-58 229.2 263 50.2
Psat4g224200 Pisum sativum HOM05D006946 ORTHO05D008634 3.2e-57 226.1 183 61.2
Sp5g02920 Schrenkiella parvula HOM05D006946 ORTHO05D008634 3.5e-56 222.6 180 56.7
Aqoxy1G01627 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 4.6e-56 222.2 272 47.4
HanXRQChr13g0423251 Helianthus annuus HOM05D006946 ORTHO05D008634 1.7e-55 220.3 180 58.3
Aqoxy5G04137 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 5.1e-55 218.8 271 46.9
Gohir.A12G097300 Gossypium hirsutum HOM05D006946 ORTHO05D008634 6.6e-55 218.4 153 67.3
CiPaw.14G020200 Carya illinoinensis HOM05D006946 ORTHO05D008634 8.6e-55 218.0 131 73.3
CARHR170620 Cardamine hirsuta HOM05D006946 ORTHO05D008634 1.5e-54 217.2 180 56.7
THA.LOC104817188 Tarenaya hassleriana HOM05D006946 ORTHO05D008634 7.3e-54 214.9 273 44.0
Sabra02G0106500 Salix brachista HOM05D006946 ORTHO05D008634 9.5e-54 214.5 263 48.3
Sc02g0003120 Simmondsia chinensis HOM05D006946 ORTHO05D008634 4.7e-53 212.2 269 44.2
AT3G60300 Arabidopsis thaliana HOM05D006946 ORTHO05D008634 6.2e-53 211.8 180 54.4
Thhalv10006060m.g Eutrema salsugineum HOM05D006946 ORTHO05D008634 1.4e-52 210.7 183 55.2
Carub.0005s2704 Capsella rubella HOM05D006946 ORTHO05D008634 1.8e-52 210.3 180 53.9
PSO717G0092 Papaver somniferum HOM05D006946 ORTHO05D008634 2.6e-51 206.5 266 44.0
ECA240G0199 Erigeron canadensis HOM05D006946 ORTHO05D008634 9.9e-51 204.5 180 57.8
Cc02_g25140 Coffea canephora HOM05D006946 ORTHO05D008634 1.3e-50 204.1 276 44.9
PSO675G1257 Papaver somniferum HOM05D006946 ORTHO05D008634 1.1e-49 201.1 266 43.2
Migut.B01532 Erythranthe guttata HOM05D006946 ORTHO05D008634 1.9e-49 200.3 263 44.1
Lj9A556T13 Lonicera japonica HOM05D006946 ORTHO05D008634 2.4e-49 199.9 254 46.5
Eucgr.E01546 Eucalyptus grandis HOM05D006946 ORTHO05D008634 3.2e-49 199.5 270 43.0
MSTRG.20688 Avicennia marina HOM05D006946 ORTHO05D008634 1.6e-48 197.2 258 43.4
SalBow5G3575 Salvia bowleyana HOM05D006946 ORTHO05D008634 4.6e-48 195.7 260 45.0
Lsat_1_v5_gn_3_126900 Lactuca sativa HOM05D006946 ORTHO05D008634 3.0e-47 193.0 266 47.7
Aa31LG10G14420 Aethionema arabicum HOM05D006946 ORTHO05D008634 1.1e-46 191.0 183 51.4
ATR0057G021 Amborella trichopoda HOM05D006946 ORTHO05D008634 1.6e-45 187.2 189 51.9
Nitab4.5_0007027g0020 Nicotiana tabacum HOM05D006946 ORTHO05D008634 3.6e-45 186.0 260 42.7
C04p32350 Brassica napus HOM05D006946 ORTHO05D008634 6.2e-45 185.3 182 51.1
BolC4t24784H Brassica oleracea HOM05D006946 ORTHO05D008634 1.1e-44 184.5 182 52.2
BraA04t15895Z Brassica rapa HOM05D006946 ORTHO05D008634 5.2e-44 182.2 183 50.3
A04p01710 Brassica napus HOM05D006946 ORTHO05D008634 1.2e-43 181.0 183 49.7
Sopen01g036020 Solanum pennellii HOM05D006946 ORTHO05D008634 4.4e-43 179.1 271 41.7
PGSC0003DMG400025996 Solanum tuberosum HOM05D006946 ORTHO05D008634 1.7e-42 177.2 278 41.4
EL10Ac1g00757 Beta vulgaris HOM05D006946 ORTHO05D008634 2.2e-42 176.8 177 52.0
SGA_v2.0_scaffold340G49324 Striga asiatica HOM05D006946 ORTHO05D008634 2.2e-42 176.8 261 42.1
Zm00001eb200010 Zea mays HOM05D006946 ORTHO05D008634 2.2e-42 176.8 262 39.7
AUR62023403 Chenopodium quinoa HOM05D006946 ORTHO05D008634 6.4e-42 175.3 177 50.8
Hma1.2p1_0072F.1_g038320 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 6.4e-42 175.3 131 61.8
AUR62013748 Chenopodium quinoa HOM05D006946 ORTHO05D008634 8.4e-42 174.9 177 52.0
AL5G42520 Arabidopsis lyrata HOM05D006946 ORTHO05D008634 5.4e-41 172.2 180 48.3
Solyc01g090220.4 Solanum lycopersicum HOM05D006946 ORTHO05D008634 5.4e-41 172.2 267 40.1
CAN.G1473.5 Capsicum annuum HOM05D006946 ORTHO05D008634 2.7e-40 169.9 259 40.5
HPP92_022105 Vanilla planifolia HOM05D006946 ORTHO05D008634 1.7e-39 167.2 180 44.4
HPP92_022132 Vanilla planifolia HOM05D006946 ORTHO05D008634 3.9e-39 166.0 180 44.4
Hund27407 Selenicereus undatus HOM05D006946 ORTHO05D008634 6.6e-39 165.2 212 46.2
Ah.05g177890 Amaranthus hybridus HOM05D006946 ORTHO05D008634 4.3e-38 162.5 177 48.0
unitig_750.g28410 Utricularia gibba HOM05D006946 ORTHO05D008634 4.8e-37 159.1 258 41.1
Nitab4.5_0000920g0010 Nicotiana tabacum HOM05D006946 ORTHO05D008634 3.3e-30 136.3 263 36.5
Mapoly0040s0025 Marchantia polymorpha HOM05D006946 ORTHO05D008634 4.0e-28 129.4 183 41.5
PSO017G5203 Papaver somniferum HOM05D006946 ORTHO05D008634 1.1e-25 121.3 133 46.6
Peaxi162Scf00475g00422 Petunia axillaris HOM05D000253 ORTHO05D000149 3.5e-24 116.3 231 36.8
MD02G1213400 Malus domestica HOM05D006946 ORTHO05D008634 1.3e-23 114.4 114 53.5
Psat2g026240 Pisum sativum HOM05D006946 ORTHO05D008634 9.6e-22 108.2 116 50.9
Cpa.g.sc22.65 Carica papaya HOM05D006946 ORTHO05D008634 2.1e-21 107.1 238 33.6
Psat1g142600 Pisum sativum HOM05D006946 ORTHO05D008634 8.1e-21 105.1 116 50.9
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 8.1e-21 105.1 94 57.4
CBR_g38735 Chara braunii HOM05D000019 ORTHO05D000353 3.1e-20 103.2 221 29.0
AagrBONN_evm.TU.Sc2ySwM_117.2461 Anthoceros agrestis HOM05D006946 ORTHO05D008634 4.0e-20 102.8 176 35.8
Potri.014G048000 Populus trichocarpa HOM05D006946 ORTHO05D008634 2.5e-17 93.6 120 43.3
SMO352G0084 Selaginella moellendorffii HOM05D006946 ORTHO05D008634 6.3e-13 79.0 71 46.5
Psat6g138360 Pisum sativum HOM05D000346 ORTHO05D008634 1.2e-11 74.7 90 48.9
MCO13G420 Micromonas commoda HOM05D006946 ORTHO05D008634 2.6e-11 73.6 67 43.3
Psat0s4856g0040 Pisum sativum HOM05D006946 ORTHO05D008634 3.8e-10 69.7 85 45.9
AUR62044571 Chenopodium quinoa HOM05D006946 ORTHO05D008634 1.9e-09 67.4 156 33.3
SEGI_22555 Sequoiadendron giganteum HOM05D006946 ORTHO05D000002 1.0e-07 61.6 79 45.6
PRCOL_00003801 Prasinoderma coloniale HOM05D013257 ORTHO05D015313 1.5e-06 57.8 113 31.9
CiPaw.16G011700 Carya illinoinensis HOM05D001336 ORTHO05D034236 9.7e-06 55.1 32 71.9


User provided reference genes

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