Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 1.9e-94 349.4 203 100.0
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 3.4e-75 285.4 203 81.8
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 2.9e-74 282.3 203 81.8
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 7.6e-67 257.7 193 73.6
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 6.0e-64 248.1 193 72.0
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.0e-63 247.3 193 73.1
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.3e-63 246.9 193 75.6
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.3e-63 246.9 193 73.1
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 3.0e-63 245.7 193 71.5
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 1.5e-62 243.4 196 74.5
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.5e-62 243.4 193 75.6
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 7.3e-62 241.1 193 72.0
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 4.7e-61 238.4 195 73.8
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 4.0e-60 235.3 191 69.6
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 2.0e-59 233.0 190 66.8
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 2.6e-59 232.6 193 73.1
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 2.6e-59 232.6 191 69.6
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 2.6e-59 232.6 195 69.7
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 5.8e-59 231.5 193 70.5
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 9.9e-59 230.7 194 71.6
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 9.9e-59 230.7 191 69.1
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 1.7e-58 229.9 195 69.2
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 3.8e-58 228.8 191 72.3
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 8.4e-58 227.6 197 70.1
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 1.9e-57 226.5 193 70.5
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 5.4e-57 224.9 192 68.8
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 9.3e-57 224.2 195 66.2
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 9.3e-57 224.2 196 68.9
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 1.2e-56 223.8 204 66.7
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 6.0e-56 221.5 197 68.5
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 1.7e-55 219.9 192 69.8
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 3.9e-55 218.8 193 68.9
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 8.7e-55 217.6 193 70.5
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 1.1e-54 217.2 196 68.9
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 1.6e-53 213.4 189 70.4
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 3.6e-53 212.2 192 66.1
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 4.8e-53 211.8 192 67.2
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 6.2e-53 211.5 195 68.2
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 1.4e-52 210.3 197 62.4
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 1.8e-52 209.9 191 66.5
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 3.1e-52 209.1 192 65.1
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 6.9e-52 208.0 192 67.7
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 1.5e-51 206.8 186 67.2
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 2.0e-51 206.5 195 67.2
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 2.6e-51 206.1 197 64.5
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 2.6e-51 206.1 195 65.6
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 2.2e-50 203.0 191 63.9
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 4.9e-50 201.8 197 65.5
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.4e-49 200.3 195 63.6
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.4e-49 200.3 192 64.1
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 1.9e-49 199.9 191 63.9
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 2.4e-49 199.5 188 66.5
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 3.2e-49 199.1 195 62.1
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 4.2e-49 198.7 192 66.7
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 7.1e-49 198.0 197 64.5
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 9.3e-49 197.6 194 63.9
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 9.3e-49 197.6 196 63.8
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 2.1e-48 196.4 167 65.9
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 2.7e-48 196.1 192 64.1
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 1.3e-47 193.7 198 62.6
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 2.3e-47 193.0 192 63.5
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 2.3e-47 193.0 193 65.3
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 2.3e-47 193.0 186 67.2
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 3.9e-47 192.2 194 62.9
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 5.1e-47 191.8 192 63.5
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 6.6e-47 191.4 193 63.2
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 8.7e-47 191.0 193 63.2
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 2.5e-46 189.5 190 65.3
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 7.3e-46 188.0 188 64.9
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 1.3e-45 187.2 167 62.3
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 2.8e-45 186.0 207 57.0
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 4.8e-45 185.3 167 62.9
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 4.8e-45 185.3 191 61.3
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 6.2e-45 184.9 195 61.5
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 1.1e-44 184.1 203 60.1
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 1.4e-44 183.7 199 60.8
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.4e-44 183.7 197 61.9
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 2.4e-44 183.0 198 61.6
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 2.6e-43 179.5 192 60.9
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 3.4e-43 179.1 197 61.4
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 4.5e-43 178.7 195 62.6
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 4.5e-43 178.7 197 60.9
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 5.8e-43 178.3 196 58.2
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 5.8e-43 178.3 196 58.2
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 5.8e-43 178.3 196 58.2
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 7.6e-43 177.9 192 59.9
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 1.7e-42 176.8 196 58.2
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 1.7e-42 176.8 196 58.2
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 2.9e-42 176.0 191 60.7
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 3.8e-42 175.6 193 59.1
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 3.8e-42 175.6 195 61.5
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 4.9e-42 175.3 195 61.5
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 6.4e-42 174.9 158 69.6
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 8.4e-42 174.5 196 62.2
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 3.2e-41 172.6 193 60.1
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 6.0e-40 168.3 190 52.6
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 1.0e-39 167.5 198 56.1
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 1.0e-39 167.5 141 70.9
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 8.7e-39 164.5 193 58.5
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 1.9e-38 163.3 194 57.2
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.9e-38 163.3 154 68.2
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 2.5e-38 162.9 154 68.8
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 5.6e-38 161.8 196 55.6
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 2.1e-37 159.8 136 65.4
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 2.8e-37 159.5 192 56.2
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 8.1e-37 157.9 191 49.2
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.1e-36 157.5 135 71.1
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 1.8e-36 156.8 194 54.6
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 2.4e-36 156.4 191 56.0
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 2.4e-36 156.4 191 56.0
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 2.4e-36 156.4 138 64.5
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 5.3e-36 155.2 190 54.7
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 5.3e-36 155.2 188 48.9
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 4.5e-35 152.1 190 54.7
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 5.8e-35 151.8 135 69.6
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 3.8e-34 149.1 184 50.0
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 6.5e-34 148.3 191 52.9
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.7e-32 142.9 149 63.1
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 6.0e-32 141.7 186 47.8
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 1.8e-31 140.2 115 60.9
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 5.7e-30 135.2 118 72.0
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 5.3e-28 128.6 202 51.5
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 6.9e-28 128.3 120 56.7
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 1.2e-27 127.5 122 57.4
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 7.4e-22 108.2 104 59.6
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 8.2e-21 104.8 186 45.7
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 5.9e-19 98.6 105 66.7
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 7.7e-19 98.2 126 48.4
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 2.3e-15 86.7 114 49.1
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 3.0e-15 86.3 139 44.6
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 5.1e-15 85.5 90 53.3
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 7.4e-14 81.6 130 51.5
FvH4_3g27021 Fragaria vesca HOM05D005729 ORTHO05D007026 4.1e-12 75.9 69 58.0
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 1.3e-10 70.9 68 57.4
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 2.5e-09 66.6 179 39.7
Lalb_Chr14g0364061 Lupinus albus HOM05D005729 ORTHO05D007026 3.0e-07 59.7 61 68.9
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 1.1e-06 57.8 62 51.6


User provided reference genes

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